Wall clock time and date at job start Wed Apr 1 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00398 * 2 1 4 4 C 1.52993 * 109.47379 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47394 * 180.02562 * 4 3 2 6 6 C 1.34270 * 125.75774 * 125.29364 * 5 4 3 7 7 C 1.38058 * 107.41544 * 180.16013 * 6 5 4 8 8 C 1.47402 * 126.41840 * 179.83638 * 7 6 5 9 9 O 1.21605 * 120.00111 * 179.68718 * 8 7 6 10 10 N 1.34779 * 119.99910 * 359.68546 * 8 7 6 11 11 C 1.39868 * 120.00248 * 174.65936 * 10 8 7 12 12 C 1.38972 * 120.03814 * 146.57808 * 11 10 8 13 13 C 1.38148 * 120.06947 * 179.97438 * 12 11 10 14 14 C 1.38177 * 120.13415 * 359.74016 * 13 12 11 15 15 C 1.38902 * 120.07435 * 0.51321 * 14 13 12 16 16 O 1.35756 * 120.03519 * 179.76329 * 15 14 13 17 17 C 1.34837 * 116.99649 * 353.90440 * 16 15 14 18 18 H 1.07994 * 120.00096 * 354.59297 * 17 16 15 19 19 C 1.38655 * 119.99653 * 174.60065 * 17 16 15 20 20 N 1.31556 * 119.99495 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00176 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46951 * 90.00483 * 21 19 17 23 23 H 1.48494 * 109.47165 * 209.99934 * 21 19 17 24 24 H 1.48497 * 109.47508 * 330.00617 * 21 19 17 25 25 C 1.38728 * 120.03485 * 326.55432 * 11 10 8 26 26 C 1.41304 * 107.16683 * 359.56954 * 7 6 5 27 27 C 1.50703 * 125.98671 * 180.28073 * 26 7 6 28 28 N 1.30445 * 108.02222 * 0.26448 * 26 7 6 29 29 H 1.09002 * 109.46722 * 299.99440 * 1 2 3 30 30 H 1.08998 * 109.47381 * 59.99354 * 1 2 3 31 31 H 1.09001 * 109.47496 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46571 * 60.00602 * 3 2 1 33 33 H 1.08997 * 109.47833 * 300.00901 * 3 2 1 34 34 H 1.09002 * 109.47271 * 60.00286 * 4 3 2 35 35 H 1.09004 * 109.47553 * 300.00487 * 4 3 2 36 36 H 1.08000 * 126.28860 * 359.97438 * 6 5 4 37 37 H 0.97006 * 119.99594 * 354.66002 * 10 8 7 38 38 H 1.08006 * 119.96524 * 359.95245 * 12 11 10 39 39 H 1.07994 * 119.93387 * 180.02562 * 13 12 11 40 40 H 1.08004 * 119.96117 * 180.25495 * 14 13 12 41 41 H 0.97003 * 119.99561 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.06868 * 0.02562 * 25 11 10 43 43 H 1.08999 * 109.46419 * 90.00691 * 27 26 7 44 44 H 1.09003 * 109.47134 * 210.00495 * 27 26 7 45 45 H 1.08994 * 109.46981 * 330.00221 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5228 0.0000 6 6 5.0260 2.9829 0.8893 7 6 5.3269 4.2836 0.5375 8 6 6.2623 5.1846 1.2346 9 8 6.4447 6.3124 0.8180 10 7 6.9155 4.7585 2.3339 11 6 7.8850 5.5711 2.9303 12 6 8.0615 5.5463 4.3086 13 6 9.0193 6.3484 4.8984 14 6 9.8083 7.1735 4.1199 15 6 9.6333 7.2067 2.7423 16 8 10.4056 8.0212 1.9787 17 6 11.2350 8.8633 2.6277 18 1 11.2010 8.9312 3.7049 19 6 12.1312 9.6423 1.9118 20 7 12.9400 10.4643 2.5449 21 14 12.1903 9.5245 0.0485 22 1 11.2474 10.5094 -0.5399 23 1 13.5680 9.8159 -0.4225 24 1 11.8022 8.1546 -0.3735 25 6 8.6720 6.4025 2.1467 26 6 4.5750 4.5873 -0.6197 27 6 4.5869 5.8970 -1.3650 28 7 3.8690 3.5351 -0.9299 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8462 0.8901 33 1 1.6887 1.8464 -0.8898 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6433 0.8891 36 1 5.4329 2.4369 1.7276 37 1 6.7131 3.8881 2.7113 38 1 7.4489 4.8996 4.9193 39 1 9.1548 6.3271 5.9696 40 1 10.5590 7.7963 4.5835 41 1 13.5673 11.0090 2.0441 42 1 8.5368 6.4236 1.0754 43 1 5.3586 5.8702 -2.1343 44 1 3.6148 6.0588 -1.8309 45 1 4.7957 6.7093 -0.6688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782546028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:14 Heat of formation + Delta-G solvation = 4.460372 kcal Electronic energy + Delta-G solvation = -28685.661153 eV Core-core repulsion = 24478.486173 eV Total energy + Delta-G solvation = -4207.174980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78222 -39.91460 -38.67520 -38.46833 -36.60076 -34.70502 -34.14706 -32.33044 -31.48216 -30.53470 -29.51865 -28.51682 -27.96997 -26.51855 -25.18169 -24.00360 -22.96055 -22.05147 -21.35345 -20.25229 -19.77373 -18.24430 -17.84896 -17.44913 -17.00573 -16.82950 -16.09318 -15.79585 -15.47054 -15.33438 -15.17543 -14.88939 -14.47018 -14.30019 -14.07689 -13.83214 -13.70173 -13.54002 -13.13531 -13.02188 -12.80822 -12.43666 -12.32143 -12.24461 -12.19440 -12.11459 -11.89903 -11.65725 -11.15561 -11.07950 -10.95772 -10.75072 -10.34414 -10.20406 -9.84534 -9.69477 -9.63447 -9.27950 -8.96936 -8.81391 -7.74492 -7.27594 -6.36740 -4.02920 1.14108 1.78011 1.84485 2.20002 2.27660 3.15762 3.24016 3.28807 3.32708 3.45971 3.48292 3.96974 4.22193 4.28323 4.30273 4.39295 4.54746 4.60351 4.73806 4.76460 4.82268 4.89365 5.04804 5.08745 5.11116 5.14665 5.18629 5.21620 5.58934 5.63670 5.74120 5.77185 5.87017 6.11024 6.15543 6.29981 6.32972 6.35173 6.48141 6.55968 6.84500 6.96199 7.15564 7.28370 7.36276 7.62493 7.67640 7.84876 8.07784 8.36766 8.98944 9.62421 10.70747 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.002088 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.523325 B =13409.304495 C =14517.465333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.360 5.360 6 C 0.103 3.897 7 C -0.281 4.281 8 C 0.588 3.412 9 O -0.510 6.510 10 N -0.669 5.669 11 C 0.180 3.820 12 C -0.229 4.229 13 C -0.060 4.060 14 C -0.233 4.233 15 C 0.174 3.826 16 O -0.214 6.214 17 C -0.387 4.387 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.880 5.880 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.187 4.187 26 C 0.140 3.860 27 C -0.081 4.081 28 N -0.302 5.302 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.185 0.815 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.078 -21.311 -2.615 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.139 5.139 6 C -0.048 4.048 7 C -0.296 4.296 8 C 0.376 3.624 9 O -0.384 6.384 10 N -0.313 5.313 11 C 0.086 3.914 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.252 4.252 15 C 0.121 3.879 16 O -0.119 6.119 17 C -0.462 4.462 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.518 5.518 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.208 4.208 26 C -0.028 4.028 27 C -0.139 4.139 28 N -0.123 5.123 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.202 0.798 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.590 -21.144 -4.059 31.207 hybrid contribution 0.424 -0.011 0.307 0.524 sum -22.166 -21.155 -3.752 30.870 Atomic orbital electron populations 1.22792 0.79814 1.03182 1.00462 1.87774 1.20687 1.26840 1.95624 1.22643 0.92408 0.85415 1.02223 1.21490 0.92826 0.78616 1.05719 1.48186 1.32704 1.11991 1.20988 1.23106 0.92217 0.94495 0.94945 1.20254 1.10452 0.95204 1.03659 1.17279 0.79224 0.86232 0.79674 1.90831 1.63639 1.18985 1.64992 1.43221 1.38734 1.20318 1.29022 1.17097 0.89205 0.93964 0.91091 1.20319 1.05342 1.07338 0.91975 1.20552 0.94195 0.94495 0.98596 1.21297 1.04946 1.05318 0.93665 1.18859 0.90050 0.89159 0.89829 1.83600 1.48182 1.44990 1.35082 1.20774 1.15004 1.16343 0.94127 0.87587 1.24456 0.94193 0.95010 1.00287 1.69650 1.21079 1.24275 1.36760 0.86191 0.77218 0.80052 0.83564 1.19761 1.20901 1.18310 1.20028 0.98021 1.02406 1.00357 1.22536 0.91862 0.95320 0.93087 1.20405 1.02707 0.90612 1.00196 1.77195 1.25267 0.96532 1.13342 0.93743 0.93647 0.89098 0.92525 0.91396 0.88285 0.87289 0.79845 0.76363 0.87247 0.86790 0.84854 0.91103 0.85192 0.89895 0.91047 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.66 10.70 -35.23 -0.38 -3.03 16 3 C 0.05 0.32 6.11 37.15 0.23 0.55 16 4 C 0.13 0.77 6.86 -4.05 -0.03 0.75 16 5 N -0.36 -3.16 3.65 -60.80 -0.22 -3.38 16 6 C 0.10 0.86 10.95 -16.55 -0.18 0.68 16 7 C -0.28 -3.41 6.13 -105.07 -0.64 -4.05 16 8 C 0.59 8.89 7.55 -12.53 -0.09 8.79 16 9 O -0.51 -9.78 12.61 5.27 0.07 -9.72 16 10 N -0.67 -9.07 5.32 -10.86 -0.06 -9.13 16 11 C 0.18 3.16 6.27 -83.74 -0.53 2.64 16 12 C -0.23 -3.70 9.96 -39.34 -0.39 -4.10 16 13 C -0.06 -1.06 10.03 -39.64 -0.40 -1.45 16 14 C -0.23 -5.06 9.13 -39.36 -0.36 -5.42 16 15 C 0.17 4.19 6.64 -39.14 -0.26 3.93 16 16 O -0.21 -5.87 8.58 0.01 0.00 -5.87 16 17 C -0.39 -11.13 9.90 30.89 0.31 -10.82 16 18 H 0.11 3.09 5.53 -52.49 -0.29 2.79 16 19 C 0.06 1.82 5.49 -17.52 -0.10 1.73 16 20 N -0.88 -25.72 13.96 55.48 0.77 -24.95 16 21 Si 0.90 22.38 28.62 -169.99 -4.86 17.52 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.19 -4.04 8.60 -39.20 -0.34 -4.38 16 26 C 0.14 1.76 7.26 -82.01 -0.60 1.16 16 27 C -0.08 -0.94 9.92 36.01 0.36 -0.58 16 28 N -0.30 -3.52 12.33 33.90 0.42 -3.10 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.35 8.06 -51.93 -0.42 -0.07 16 36 H 0.18 0.71 7.47 -52.49 -0.39 0.32 16 37 H 0.40 3.63 7.76 -40.82 -0.32 3.31 16 38 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 3.02 5.71 -52.48 -0.30 2.72 16 41 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.13 2.95 6.42 -52.49 -0.34 2.61 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.10 1.32 6.55 -51.93 -0.34 0.98 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -35.34 385.98 -6.11 -41.45 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.76 Total: 3.71 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.91 Total: -9.32 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.91 Total: -40.55 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.31 Total: -18.62 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.86 Total: 17.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.34 -6.11 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782546028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.910 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds