Wall clock time and date at job start Wed Apr 1 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00398 * 2 1 4 4 C 1.52993 * 109.47379 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47394 * 180.02562 * 4 3 2 6 6 C 1.34270 * 125.75774 * 125.29364 * 5 4 3 7 7 C 1.38058 * 107.41544 * 180.16013 * 6 5 4 8 8 C 1.47402 * 126.41840 * 179.83638 * 7 6 5 9 9 O 1.21605 * 120.00111 * 179.68718 * 8 7 6 10 10 N 1.34779 * 119.99910 * 359.68546 * 8 7 6 11 11 C 1.39868 * 120.00248 * 174.65936 * 10 8 7 12 12 C 1.38972 * 120.03814 * 146.57808 * 11 10 8 13 13 C 1.38148 * 120.06947 * 179.97438 * 12 11 10 14 14 C 1.38177 * 120.13415 * 359.74016 * 13 12 11 15 15 C 1.38902 * 120.07435 * 0.51321 * 14 13 12 16 16 O 1.35756 * 120.03519 * 179.76329 * 15 14 13 17 17 C 1.34837 * 116.99649 * 353.90440 * 16 15 14 18 18 H 1.07994 * 120.00096 * 354.59297 * 17 16 15 19 19 C 1.38655 * 119.99653 * 174.60065 * 17 16 15 20 20 N 1.31556 * 119.99495 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00176 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46951 * 90.00483 * 21 19 17 23 23 H 1.48494 * 109.47165 * 209.99934 * 21 19 17 24 24 H 1.48497 * 109.47508 * 330.00617 * 21 19 17 25 25 C 1.38728 * 120.03485 * 326.55432 * 11 10 8 26 26 C 1.41304 * 107.16683 * 359.56954 * 7 6 5 27 27 C 1.50703 * 125.98671 * 180.28073 * 26 7 6 28 28 N 1.30445 * 108.02222 * 0.26448 * 26 7 6 29 29 H 1.09002 * 109.46722 * 299.99440 * 1 2 3 30 30 H 1.08998 * 109.47381 * 59.99354 * 1 2 3 31 31 H 1.09001 * 109.47496 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46571 * 60.00602 * 3 2 1 33 33 H 1.08997 * 109.47833 * 300.00901 * 3 2 1 34 34 H 1.09002 * 109.47271 * 60.00286 * 4 3 2 35 35 H 1.09004 * 109.47553 * 300.00487 * 4 3 2 36 36 H 1.08000 * 126.28860 * 359.97438 * 6 5 4 37 37 H 0.97006 * 119.99594 * 354.66002 * 10 8 7 38 38 H 1.08006 * 119.96524 * 359.95245 * 12 11 10 39 39 H 1.07994 * 119.93387 * 180.02562 * 13 12 11 40 40 H 1.08004 * 119.96117 * 180.25495 * 14 13 12 41 41 H 0.97003 * 119.99561 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.06868 * 0.02562 * 25 11 10 43 43 H 1.08999 * 109.46419 * 90.00691 * 27 26 7 44 44 H 1.09003 * 109.47134 * 210.00495 * 27 26 7 45 45 H 1.08994 * 109.46981 * 330.00221 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5228 0.0000 6 6 5.0260 2.9829 0.8893 7 6 5.3269 4.2836 0.5375 8 6 6.2623 5.1846 1.2346 9 8 6.4447 6.3124 0.8180 10 7 6.9155 4.7585 2.3339 11 6 7.8850 5.5711 2.9303 12 6 8.0615 5.5463 4.3086 13 6 9.0193 6.3484 4.8984 14 6 9.8083 7.1735 4.1199 15 6 9.6333 7.2067 2.7423 16 8 10.4056 8.0212 1.9787 17 6 11.2350 8.8633 2.6277 18 1 11.2010 8.9312 3.7049 19 6 12.1312 9.6423 1.9118 20 7 12.9400 10.4643 2.5449 21 14 12.1903 9.5245 0.0485 22 1 11.2474 10.5094 -0.5399 23 1 13.5680 9.8159 -0.4225 24 1 11.8022 8.1546 -0.3735 25 6 8.6720 6.4025 2.1467 26 6 4.5750 4.5873 -0.6197 27 6 4.5869 5.8970 -1.3650 28 7 3.8690 3.5351 -0.9299 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8462 0.8901 33 1 1.6887 1.8464 -0.8898 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6433 0.8891 36 1 5.4329 2.4369 1.7276 37 1 6.7131 3.8881 2.7113 38 1 7.4489 4.8996 4.9193 39 1 9.1548 6.3271 5.9696 40 1 10.5590 7.7963 4.5835 41 1 13.5673 11.0090 2.0441 42 1 8.5368 6.4236 1.0754 43 1 5.3586 5.8702 -2.1343 44 1 3.6148 6.0588 -1.8309 45 1 4.7957 6.7093 -0.6688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782546028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:13 Heat of formation + Delta-G solvation = -21.102817 kcal Electronic energy + Delta-G solvation = -28686.769656 eV Core-core repulsion = 24478.486173 eV Total energy + Delta-G solvation = -4208.283483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.60830 -41.29865 -40.20978 -38.99865 -38.19145 -35.62138 -35.29714 -34.42383 -32.31965 -31.50584 -31.02481 -29.81392 -28.73066 -27.23696 -27.00884 -24.91788 -23.90638 -23.24043 -22.75865 -21.41023 -20.75092 -19.78034 -19.44186 -18.63902 -17.81062 -17.34387 -17.04637 -16.91743 -16.73328 -16.48535 -16.31110 -16.03770 -15.74303 -15.56854 -15.44769 -15.16685 -14.91700 -14.55647 -14.32855 -14.24016 -14.12265 -13.90312 -13.76425 -13.29364 -13.05247 -12.96091 -12.88015 -12.71776 -12.61335 -12.44709 -12.33062 -12.04062 -11.87078 -11.48383 -11.26833 -10.85766 -10.80381 -10.77437 -10.45127 -9.82844 -9.33116 -8.86629 -8.49749 -6.21204 0.24796 0.61283 0.69024 1.05894 1.16674 1.28902 1.33817 1.49773 2.07867 2.27951 2.34957 2.69747 2.80025 3.10173 3.17093 3.36993 3.66916 3.78397 3.84666 4.03733 4.14518 4.19022 4.23932 4.36669 4.41073 4.44540 4.44782 4.45595 4.59391 4.63932 4.67156 4.71192 4.75221 4.83023 4.90645 4.94415 5.01002 5.38840 5.42177 5.43933 5.48456 5.71331 5.76137 5.80723 5.93518 6.01805 6.25672 6.42379 6.60265 6.85381 7.25512 7.62276 8.61760 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.002088 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.523325 B =13409.304495 C =14517.465333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.054 3.946 4 C 0.130 3.870 5 N -0.352 5.352 6 C 0.139 3.861 7 C -0.314 4.314 8 C 0.588 3.412 9 O -0.561 6.561 10 N -0.650 5.650 11 C 0.190 3.810 12 C -0.194 4.194 13 C -0.052 4.052 14 C -0.250 4.250 15 C 0.134 3.866 16 O -0.250 6.250 17 C -0.395 4.395 18 H 0.086 0.914 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.262 1.262 24 H -0.270 1.270 25 C -0.203 4.203 26 C 0.122 3.878 27 C -0.078 4.078 28 N -0.322 5.322 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.239 0.761 37 H 0.429 0.571 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.284 0.716 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.485 -25.579 -1.104 35.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.023 4.023 4 C 0.010 3.990 5 N -0.130 5.130 6 C -0.013 4.013 7 C -0.329 4.329 8 C 0.378 3.622 9 O -0.439 6.439 10 N -0.297 5.297 11 C 0.095 3.905 12 C -0.214 4.214 13 C -0.070 4.070 14 C -0.270 4.270 15 C 0.084 3.916 16 O -0.157 6.157 17 C -0.472 4.472 18 H 0.104 0.896 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.787 3.213 22 H -0.194 1.194 23 H -0.187 1.187 24 H -0.195 1.195 25 C -0.224 4.224 26 C -0.045 4.045 27 C -0.137 4.137 28 N -0.144 5.144 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.165 0.835 36 H 0.255 0.745 37 H 0.269 0.731 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.059 -25.499 -2.533 35.841 hybrid contribution 0.825 0.975 -0.018 1.277 sum -24.234 -24.524 -2.551 34.572 Atomic orbital electron populations 1.22961 0.78800 1.04263 1.00854 1.87748 1.21868 1.26908 1.95666 1.22556 0.92929 0.85279 1.01552 1.21819 0.92278 0.77050 1.07808 1.48457 1.32204 1.12309 1.20059 1.23775 0.89921 0.92823 0.94796 1.20032 1.11644 0.96736 1.04475 1.17727 0.79072 0.85935 0.79421 1.90825 1.65351 1.21482 1.66261 1.43040 1.37176 1.20920 1.28562 1.17225 0.88638 0.92928 0.91717 1.20923 1.03571 1.05546 0.91370 1.21019 0.92910 0.92782 1.00337 1.21346 1.05920 1.06574 0.93124 1.19373 0.90887 0.90254 0.91050 1.83540 1.49730 1.46668 1.35806 1.20736 1.15559 1.17350 0.93519 0.89628 1.25173 0.94084 0.94883 1.04358 1.69716 1.22395 1.25666 1.38255 0.85324 0.78122 0.79212 0.78691 1.19420 1.18654 1.19498 1.20087 0.98723 1.03645 0.99981 1.22628 0.92523 0.95654 0.93731 1.20309 1.03365 0.90340 0.99666 1.77160 1.25554 0.97017 1.14661 0.93037 0.93607 0.87754 0.92275 0.93097 0.87926 0.83503 0.74476 0.73109 0.81454 0.82700 0.87010 0.90582 0.87297 0.90251 0.89610 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.41 10.70 -148.98 -1.59 -6.00 16 3 C 0.05 0.54 6.11 71.98 0.44 0.98 16 4 C 0.13 0.96 6.86 86.38 0.59 1.55 16 5 N -0.35 -4.89 3.65 -346.28 -1.26 -6.15 16 6 C 0.14 1.66 10.95 84.28 0.92 2.58 16 7 C -0.31 -6.93 6.13 -20.15 -0.12 -7.06 16 8 C 0.59 16.94 7.55 86.66 0.65 17.60 16 9 O -0.56 -22.15 12.61 -4.05 -0.05 -22.20 16 10 N -0.65 -15.23 5.32 -306.51 -1.63 -16.87 16 11 C 0.19 6.16 6.27 38.15 0.24 6.40 16 12 C -0.19 -5.26 9.96 22.42 0.22 -5.04 16 13 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 14 C -0.25 -11.06 9.13 22.41 0.20 -10.85 16 15 C 0.13 6.73 6.64 22.56 0.15 6.88 16 16 O -0.25 -14.62 8.58 -22.87 -0.20 -14.82 16 17 C -0.40 -24.25 9.90 67.92 0.67 -23.57 16 18 H 0.09 5.40 5.53 -2.91 -0.02 5.38 16 19 C 0.01 0.82 5.49 84.83 0.47 1.28 16 20 N -0.92 -56.16 13.96 21.61 0.30 -55.86 16 21 Si 0.96 48.24 28.62 68.60 1.96 50.20 16 22 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 25 C -0.20 -8.93 8.60 22.51 0.19 -8.74 16 26 C 0.12 2.99 7.26 43.52 0.32 3.30 16 27 C -0.08 -1.91 9.92 71.24 0.71 -1.21 16 28 N -0.32 -6.99 12.33 -46.67 -0.58 -7.57 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.15 0.04 8.06 -2.38 -0.02 0.02 16 36 H 0.24 -0.01 7.47 -2.91 -0.02 -0.03 16 37 H 0.43 5.10 7.76 -92.70 -0.72 4.38 16 38 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 40 H 0.11 5.38 5.71 -2.91 -0.02 5.37 16 41 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.11 5.22 6.42 -2.91 -0.02 5.20 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.23 6.55 -2.39 -0.02 2.21 16 Total: -1.00 -85.79 385.98 4.40 -81.39 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.32 Total: 13.78 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 7.13 Total: -15.91 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.17 Total: -86.44 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.84 Total: -43.02 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.96 Total: 50.20 kcal Total: -85.79 4.40 -81.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782546028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.289 kcal (2) G-P(sol) polarization free energy of solvation -85.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds