Wall clock time and date at job start Wed Apr 1 2020 04:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50710 * 109.46657 * 2 1 4 4 C 1.38086 * 126.31958 * 269.98055 * 3 2 1 5 5 C 1.47279 * 126.41877 * 0.03994 * 4 3 2 6 6 O 1.21529 * 120.00442 * 0.02562 * 5 4 3 7 7 O 1.34760 * 119.99651 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99874 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47113 * 179.97438 * 8 7 5 10 10 O 1.42899 * 109.47156 * 65.00499 * 9 8 7 11 11 C 1.42900 * 114.00249 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47421 * 179.97438 * 11 10 9 13 13 H 1.08011 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00512 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00208 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99702 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47402 * 89.99754 * 16 14 12 18 18 H 1.48500 * 109.47422 * 209.99867 * 16 14 12 19 19 H 1.48501 * 109.47173 * 330.00038 * 16 14 12 20 20 C 1.41418 * 107.16196 * 180.02562 * 4 3 2 21 21 N 1.30430 * 108.07044 * 359.71757 * 20 4 3 22 22 N 1.34584 * 126.31577 * 90.00377 * 3 2 1 23 23 C 1.39808 * 125.76755 * 359.97438 * 22 3 2 24 24 C 1.38950 * 119.69070 * 154.99887 * 23 22 3 25 25 C 1.38422 * 119.10554 * 180.25346 * 24 23 22 26 26 C 1.38795 * 118.48387 * 359.50092 * 25 24 23 27 27 C 1.38134 * 119.29270 * 0.47953 * 26 25 24 28 28 N 1.31888 * 120.83898 * 359.76574 * 27 26 25 29 29 H 1.09002 * 109.47285 * 299.99244 * 1 2 3 30 30 H 1.08997 * 109.47742 * 59.99703 * 1 2 3 31 31 H 1.09010 * 109.46764 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47008 * 240.01044 * 2 1 3 33 33 H 1.08997 * 109.47742 * 120.00297 * 2 1 3 34 34 H 1.09004 * 109.47277 * 300.00311 * 8 7 5 35 35 H 1.09004 * 109.47039 * 59.99753 * 8 7 5 36 36 H 1.09005 * 109.46921 * 185.00095 * 9 8 7 37 37 H 1.08997 * 109.47244 * 304.99965 * 9 8 7 38 38 H 1.09003 * 109.46458 * 299.99409 * 11 10 9 39 39 H 1.08994 * 109.47166 * 59.99320 * 11 10 9 40 40 H 0.97005 * 119.99634 * 180.02562 * 15 14 12 41 41 H 1.07998 * 125.97034 * 179.97438 * 20 4 3 42 42 H 1.08002 * 120.44182 * 359.97091 * 24 23 22 43 43 H 1.08004 * 120.75178 * 179.72390 * 25 24 23 44 44 H 1.07994 * 120.34915 * 180.24149 * 26 25 24 45 45 H 1.07997 * 119.57570 * 179.74654 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3052 2.1919 -1.1126 5 6 2.1592 1.7800 -2.5191 6 8 1.7631 0.6628 -2.7871 7 8 2.4649 2.6420 -3.5088 8 6 2.2964 2.1683 -4.8709 9 6 2.6892 3.2775 -5.8489 10 8 4.0841 3.5577 -5.7160 11 6 4.5563 4.5854 -6.5895 12 6 6.0313 4.7972 -6.3649 13 1 6.5557 4.2063 -5.6283 14 6 6.7115 5.7451 -7.0995 15 7 7.9986 5.9302 -6.9030 16 14 5.8047 6.7664 -8.3738 17 1 5.2771 7.9993 -7.7360 18 1 6.7385 7.1359 -9.4678 19 1 4.6776 5.9761 -8.9309 20 6 2.7508 3.4513 -0.6485 21 7 2.7367 3.4300 0.6555 22 7 2.2979 2.1724 1.0844 23 6 2.1542 1.7670 2.4147 24 6 2.9116 2.3786 3.4062 25 6 2.7634 1.9641 4.7186 26 6 1.8512 0.9553 4.9952 27 6 1.1313 0.3924 3.9593 28 7 1.2980 0.8050 2.7178 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5136 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9317 1.2977 -5.0341 35 1 1.2543 1.8931 -5.0336 36 1 2.4790 2.9541 -6.8684 37 1 2.1151 4.1771 -5.6275 38 1 4.3848 4.2895 -7.6245 39 1 4.0209 5.5120 -6.3831 40 1 8.4770 6.5974 -7.4197 41 1 3.0468 4.2864 -1.2660 42 1 3.6097 3.1636 3.1556 43 1 3.3419 2.4180 5.5097 44 1 1.7087 0.6114 6.0089 45 1 0.4233 -0.3957 4.1688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815188392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:53 Heat of formation + Delta-G solvation = -8.130984 kcal Electronic energy + Delta-G solvation = -28979.700519 eV Core-core repulsion = 24771.979537 eV Total energy + Delta-G solvation = -4207.720982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19677 -40.48151 -39.73227 -37.13462 -36.00740 -34.61101 -33.73489 -32.94356 -32.67324 -30.61439 -29.99756 -29.51270 -27.56241 -25.28005 -24.33460 -23.73821 -23.04342 -22.02647 -21.81592 -21.19278 -19.92936 -18.39565 -17.14476 -16.98198 -16.92481 -16.57592 -16.47371 -16.11121 -15.89673 -15.25767 -14.97304 -14.79160 -14.56573 -14.53503 -14.35584 -14.09962 -13.68109 -13.44985 -13.38175 -12.94094 -12.58025 -12.54744 -12.49464 -12.41021 -11.81630 -11.69253 -11.44821 -11.13504 -10.95156 -10.84400 -10.80817 -10.62853 -10.44603 -10.39166 -10.27936 -10.09496 -9.85794 -9.34441 -9.18520 -8.88353 -8.79386 -8.48718 -6.10481 -4.09621 0.14614 0.63225 1.33493 1.63789 1.90034 2.85363 3.14854 3.21887 3.25529 3.32481 3.33317 3.79775 4.01634 4.26411 4.36003 4.37449 4.44815 4.52369 4.56472 4.72645 4.77844 4.90526 5.14231 5.16722 5.20550 5.21597 5.22810 5.37087 5.43713 5.44342 5.51558 5.59329 5.74662 5.77822 5.84709 5.89328 5.96936 6.04823 6.09645 6.15890 6.57920 6.59293 6.66612 6.97966 6.98854 7.40409 7.59235 7.95350 8.00304 8.65461 9.01353 9.48356 11.02491 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.002093 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.941288 B =13373.432519 C =14641.066854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C 0.194 3.806 4 C -0.275 4.275 5 C 0.546 3.454 6 O -0.520 6.520 7 O -0.336 6.336 8 C 0.077 3.923 9 C 0.057 3.943 10 O -0.375 6.375 11 C 0.168 3.832 12 C -0.518 4.518 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.128 3.872 21 N -0.291 5.291 22 N -0.317 5.317 23 C 0.362 3.638 24 C -0.152 4.152 25 C -0.054 4.054 26 C -0.179 4.179 27 C 0.128 3.872 28 N -0.493 5.493 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.266 0.734 41 H 0.212 0.788 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.354 -11.396 23.747 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C 0.066 3.934 4 C -0.287 4.287 5 C 0.391 3.609 6 O -0.411 6.411 7 O -0.252 6.252 8 C 0.004 3.996 9 C -0.020 4.020 10 O -0.294 6.294 11 C 0.093 3.907 12 C -0.556 4.556 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.062 4.062 21 N -0.107 5.107 22 N -0.091 5.091 23 C 0.136 3.864 24 C -0.175 4.175 25 C -0.081 4.081 26 C -0.200 4.200 27 C -0.030 4.030 28 N -0.206 5.206 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.076 0.924 41 H 0.228 0.772 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.161 0.839 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.424 -11.415 24.167 31.906 hybrid contribution -0.135 0.788 -1.109 1.368 sum -17.559 -10.627 23.058 30.869 Atomic orbital electron populations 1.21561 0.92814 1.02371 1.02223 1.20496 0.97717 0.87423 1.04593 1.21783 0.91503 0.95008 0.85135 1.19126 1.21769 0.96972 0.90794 1.19741 0.73574 0.82546 0.85036 1.90784 1.44521 1.21111 1.84646 1.86620 1.78665 1.43741 1.16168 1.23162 1.01215 0.98110 0.77135 1.22408 0.86628 0.96824 0.96174 1.87983 1.19811 1.58429 1.63170 1.20630 0.96116 0.85396 0.88567 1.20880 0.90845 1.21002 1.22897 0.89914 1.24774 0.94819 0.96609 0.96833 1.69879 1.07795 1.34363 1.41286 0.86845 0.80042 0.81070 0.81738 1.19901 1.20813 1.19110 1.24554 0.93040 0.97511 0.91108 1.77404 1.23074 0.96623 1.13568 1.45413 1.50165 1.10694 1.02844 1.17686 0.93530 0.93452 0.81697 1.21750 1.00951 1.02309 0.92446 1.21583 0.95919 0.94671 0.95898 1.22235 0.98125 0.98220 1.01397 1.22609 0.97019 0.97571 0.85810 1.67059 1.17044 1.13211 1.23297 0.91916 0.92561 0.91701 0.87684 0.89824 0.90283 0.90270 0.91827 0.93016 0.97873 0.98159 0.92370 0.77176 0.83267 0.83621 0.83882 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.77 37.16 0.36 -0.97 16 2 C -0.06 -0.72 5.01 -27.88 -0.14 -0.86 16 3 C 0.19 2.58 6.20 -81.44 -0.50 2.08 16 4 C -0.27 -3.99 6.13 -105.07 -0.64 -4.63 16 5 C 0.55 8.69 7.95 34.41 0.27 8.96 16 6 O -0.52 -8.64 14.63 -19.29 -0.28 -8.92 16 7 O -0.34 -5.64 10.04 -43.44 -0.44 -6.07 16 8 C 0.08 1.19 5.85 37.16 0.22 1.41 16 9 C 0.06 0.98 6.33 37.16 0.24 1.22 16 10 O -0.37 -8.74 10.30 -38.80 -0.40 -9.14 16 11 C 0.17 4.25 4.76 36.00 0.17 4.42 16 12 C -0.52 -15.47 9.99 -34.44 -0.34 -15.81 16 13 H 0.08 2.71 8.06 -52.48 -0.42 2.29 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -27.68 13.96 55.43 0.77 -26.91 16 16 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 20 C 0.13 1.73 11.87 -16.94 -0.20 1.53 16 21 N -0.29 -3.97 12.00 30.89 0.37 -3.60 16 22 N -0.32 -4.10 3.73 -8.01 -0.03 -4.13 16 23 C 0.36 3.91 7.28 -154.37 -1.12 2.79 16 24 C -0.15 -1.31 9.73 -39.25 -0.38 -1.69 16 25 C -0.05 -0.30 10.17 -39.31 -0.40 -0.70 16 26 C -0.18 -0.80 10.11 -39.41 -0.40 -1.20 16 27 C 0.13 0.75 11.18 -17.57 -0.20 0.55 16 28 N -0.49 -4.57 6.95 -12.29 -0.09 -4.65 16 29 H 0.06 0.64 7.13 -51.93 -0.37 0.27 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.10 1.30 6.51 -51.93 -0.34 0.96 16 33 H 0.08 0.87 6.86 -51.93 -0.36 0.51 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 39 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.21 2.47 8.06 -52.49 -0.42 2.05 16 42 H 0.15 1.29 7.90 -52.49 -0.41 0.87 16 43 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 44 H 0.14 0.22 8.06 -52.49 -0.42 -0.21 16 45 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -35.84 388.23 -8.14 -43.98 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.06 Total: -2.19 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.17 Total: -0.90 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 1.03 Total: -39.28 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.12 Total: -24.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.84 -8.14 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815188392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.853 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds