Wall clock time and date at job start Wed Apr 1 2020 03:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.40001 * 125.80910 * 2 1
4 4 C 1.35244 * 107.96889 * 180.02562 * 3 2 1
5 5 C 1.50703 * 126.19652 * 179.97438 * 4 3 2
6 6 N 1.35921 * 107.60746 * 0.22898 * 4 3 2
7 7 C 1.39468 * 126.10780 * 179.77111 * 6 4 3
8 8 C 1.39174 * 119.52005 * 154.72217 * 7 6 4
9 9 C 1.38011 * 119.25849 * 179.77321 * 8 7 6
10 10 C 1.40289 * 118.34988 * 0.49253 * 9 8 7
11 11 C 1.47538 * 120.49908 * 179.77186 * 10 9 8
12 12 O 1.21491 * 119.99984 * 359.97438 * 11 10 9
13 13 O 1.34737 * 119.99789 * 179.97438 * 11 10 9
14 14 C 1.45206 * 117.00024 * 179.97438 * 13 11 10
15 15 C 1.52995 * 109.46962 * 179.97438 * 14 13 11
16 16 O 1.42897 * 109.47132 * 65.00248 * 15 14 13
17 17 C 1.42903 * 114.00216 * 179.97438 * 16 15 14
18 18 C 1.50703 * 109.47298 * 179.97438 * 17 16 15
19 19 H 1.07998 * 119.99649 * 0.02562 * 18 17 16
20 20 C 1.37870 * 120.00083 * 180.02562 * 18 17 16
21 21 N 1.31517 * 120.00296 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 119.99919 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47308 * 89.99989 * 22 20 18
24 24 H 1.48508 * 109.46848 * 209.99944 * 22 20 18
25 25 H 1.48495 * 109.47012 * 329.99313 * 22 20 18
26 26 C 1.39612 * 118.99573 * 359.75387 * 10 9 8
27 27 N 1.31614 * 120.63224 * 359.97438 * 26 10 9
28 28 N 1.30791 * 125.81116 * 180.02562 * 2 1 3
29 29 H 1.08996 * 109.46948 * 90.00039 * 1 2 3
30 30 H 1.09004 * 109.47025 * 210.00163 * 1 2 3
31 31 H 1.09005 * 109.47028 * 329.99939 * 1 2 3
32 32 H 1.07994 * 126.02080 * 0.04233 * 3 2 1
33 33 H 1.09002 * 109.47152 * 90.02669 * 5 4 3
34 34 H 1.09001 * 109.46980 * 330.02770 * 5 4 3
35 35 H 1.09004 * 109.47113 * 210.02751 * 5 4 3
36 36 H 1.08001 * 120.37134 * 0.02928 * 8 7 6
37 37 H 1.07997 * 120.82876 * 180.24663 * 9 8 7
38 38 H 1.08998 * 109.46859 * 300.00230 * 14 13 11
39 39 H 1.09000 * 109.46784 * 59.99944 * 14 13 11
40 40 H 1.09008 * 109.46965 * 184.99985 * 15 14 13
41 41 H 1.08997 * 109.47743 * 305.00360 * 15 14 13
42 42 H 1.09000 * 109.47366 * 300.00496 * 17 16 15
43 43 H 1.09001 * 109.46732 * 60.00107 * 17 16 15
44 44 H 0.96996 * 120.00586 * 179.97438 * 21 20 18
45 45 H 1.08000 * 119.68184 * 179.97438 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3262 1.1354 0.0000
4 6 3.6136 0.7210 -0.0006
5 6 4.8334 1.6061 -0.0013
6 7 3.6081 -0.6382 -0.0061
7 6 4.7315 -1.4646 -0.0130
8 6 4.6365 -2.7552 0.4992
9 6 5.7504 -3.5700 0.4854
10 6 6.9455 -3.0558 -0.0394
11 6 8.1661 -3.8839 -0.0728
12 8 8.1412 -5.0201 0.3566
13 8 9.3083 -3.3800 -0.5795
14 6 10.4701 -4.2511 -0.5798
15 6 11.6623 -3.5108 -1.1893
16 8 12.0168 -2.4082 -0.3523
17 6 13.1259 -1.6462 -0.8334
18 6 13.4102 -0.5152 0.1211
19 1 12.8048 -0.3911 1.0068
20 6 14.4432 0.3609 -0.1363
21 7 15.1808 0.2093 -1.2146
22 14 14.7960 1.7623 1.0473
23 1 15.7668 1.3093 2.0756
24 1 15.3676 2.9105 0.2986
25 1 13.5341 2.1815 1.7083
26 6 6.9622 -1.7488 -0.5299
27 7 5.8745 -1.0081 -0.5021
28 7 2.2723 -1.0606 -0.0005
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3633 0.8900 0.5139
32 1 1.9894 2.1615 0.0006
33 1 5.1283 1.8192 1.0262
34 1 4.6044 2.5399 -0.5148
35 1 5.6497 1.0992 -0.5159
36 1 3.7006 -3.1165 0.8992
37 1 5.7042 -4.5771 0.8726
38 1 10.7067 -4.5414 0.4438
39 1 10.2559 -5.1421 -1.1699
40 1 12.5095 -4.1919 -1.2712
41 1 11.3943 -3.1435 -2.1798
42 1 14.0033 -2.2887 -0.9077
43 1 12.8885 -1.2403 -1.8167
44 1 15.9073 0.8259 -1.3959
45 1 7.8763 -1.3416 -0.9360
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815189218.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:13:18
Heat of formation + Delta-G solvation = -13.900024 kcal
Electronic energy + Delta-G solvation = -28414.004414 eV
Core-core repulsion = 24206.033268 eV
Total energy + Delta-G solvation = -4207.971146 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.06606 -40.83572 -39.72894 -37.14409 -36.11869 -34.68167 -33.16975 -32.81422
-32.60181 -31.18196 -30.07993 -28.47981 -27.35289 -26.95925 -24.75414 -24.26177
-22.62383 -22.27025 -21.32524 -20.72170 -20.20178 -18.32679 -17.98266 -17.28892
-16.61825 -16.52896 -16.31562 -15.87768 -15.39857 -15.22597 -14.71107 -14.58724
-14.39641 -14.28895 -14.09930 -13.89473 -13.64341 -13.55190 -13.44638 -13.14167
-13.02852 -12.72947 -12.67829 -12.60520 -12.14007 -12.01163 -11.49247 -11.10040
-11.00575 -10.90368 -10.84612 -10.67452 -10.57190 -10.46407 -10.34104 -10.08748
-9.94020 -9.24152 -9.16489 -8.91741 -8.70649 -8.25234 -6.14775 -4.16628
-0.10957 0.74433 1.42695 1.70942 2.32010 2.40385 2.54672 3.28217
3.33445 3.35638 3.38607 3.85175 4.00640 4.29051 4.29664 4.33809
4.43301 4.54812 4.63645 4.71094 4.78754 5.07211 5.14209 5.18030
5.19686 5.21912 5.25395 5.32303 5.36606 5.39157 5.46208 5.49514
5.58932 5.72622 5.80505 5.88306 5.91228 5.99185 6.01687 6.21080
6.41128 6.71351 7.01151 7.01444 7.35992 7.44754 7.65547 7.74980
8.08976 8.47901 8.95689 9.48296 10.96652
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010824 B = 0.002217 C = 0.001888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2586.206418 B =12625.371208 C =14828.796921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.094 3.906
3 C -0.267 4.267
4 C 0.119 3.881
5 C -0.110 4.110
6 N -0.332 5.332
7 C 0.401 3.599
8 C -0.176 4.176
9 C 0.011 3.989
10 C -0.188 4.188
11 C 0.516 3.484
12 O -0.509 6.509
13 O -0.335 6.335
14 C 0.076 3.924
15 C 0.061 3.939
16 O -0.391 6.391
17 C 0.194 3.806
18 C -0.515 4.515
19 H 0.067 0.933
20 C 0.056 3.944
21 N -0.898 5.898
22 Si 0.908 3.092
23 H -0.279 1.279
24 H -0.285 1.285
25 H -0.271 1.271
26 C 0.199 3.801
27 N -0.507 5.507
28 N -0.287 5.287
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.082 0.918
32 H 0.156 0.844
33 H 0.079 0.921
34 H 0.085 0.915
35 H 0.106 0.894
36 H 0.154 0.846
37 H 0.159 0.841
38 H 0.080 0.920
39 H 0.080 0.920
40 H 0.065 0.935
41 H 0.051 0.949
42 H 0.006 0.994
43 H 0.008 0.992
44 H 0.264 0.736
45 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.943 -2.744 0.757 27.093
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.075 4.075
3 C -0.295 4.295
4 C -0.003 4.003
5 C -0.168 4.168
6 N -0.110 5.110
7 C 0.174 3.826
8 C -0.198 4.198
9 C -0.015 4.015
10 C -0.192 4.192
11 C 0.360 3.640
12 O -0.399 6.399
13 O -0.251 6.251
14 C 0.003 3.997
15 C -0.017 4.017
16 O -0.311 6.311
17 C 0.120 3.880
18 C -0.553 4.553
19 H 0.085 0.915
20 C -0.145 4.145
21 N -0.537 5.537
22 Si 0.735 3.265
23 H -0.205 1.205
24 H -0.210 1.210
25 H -0.196 1.196
26 C 0.040 3.960
27 N -0.220 5.220
28 N -0.106 5.106
29 H 0.100 0.900
30 H 0.094 0.906
31 H 0.100 0.900
32 H 0.174 0.826
33 H 0.098 0.902
34 H 0.104 0.896
35 H 0.124 0.876
36 H 0.172 0.828
37 H 0.176 0.824
38 H 0.098 0.902
39 H 0.098 0.902
40 H 0.082 0.918
41 H 0.069 0.931
42 H 0.024 0.976
43 H 0.026 0.974
44 H 0.074 0.926
45 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -26.719 -3.394 0.623 26.941
hybrid contribution 0.519 0.584 0.569 0.966
sum -26.201 -2.810 1.192 26.378
Atomic orbital electron populations
1.20254 0.85854 1.03730 1.03408 1.22609 0.97284 0.90664 0.96919
1.21289 0.90778 1.00138 1.17265 1.21622 0.97909 0.83402 0.97369
1.20813 0.94148 0.97909 1.03956 1.45597 1.03680 1.03869 1.57873
1.17976 0.84594 0.87845 0.92202 1.21576 1.01036 0.93207 1.03978
1.21630 0.89336 1.00085 0.90437 1.20192 0.93305 0.96668 1.09006
1.20646 0.83590 0.85062 0.74694 1.90832 1.85578 1.19114 1.44401
1.86620 1.18605 1.46075 1.73775 1.23291 0.81682 0.91669 1.03048
1.22335 0.93567 0.91123 0.94665 1.87917 1.53455 1.41293 1.48421
1.20245 0.82561 0.89905 0.95267 1.21032 1.15155 1.10671 1.08463
0.91517 1.24947 0.95619 0.98115 0.95820 1.69955 1.19888 1.38006
1.25868 0.86332 0.78628 0.81040 0.80477 1.20475 1.21046 1.19596
1.23219 0.95208 0.88235 0.89350 1.67112 0.98617 1.37961 1.18311
1.77443 0.84337 1.22343 1.26481 0.90032 0.90571 0.89957 0.82622
0.90201 0.89624 0.87554 0.82819 0.82357 0.90210 0.90166 0.91764
0.93059 0.97598 0.97430 0.92611 0.79309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.40 10.44 36.01 0.38 -0.03 16
2 C 0.09 0.90 7.21 -82.37 -0.59 0.30 16
3 C -0.27 -2.47 10.65 -39.99 -0.43 -2.90 16
4 C 0.12 1.29 6.89 -81.85 -0.56 0.72 16
5 C -0.11 -1.00 9.98 36.01 0.36 -0.64 16
6 N -0.33 -4.07 3.77 -8.37 -0.03 -4.11 16
7 C 0.40 4.87 7.35 -154.51 -1.14 3.73 16
8 C -0.18 -1.84 9.71 -39.32 -0.38 -2.22 16
9 C 0.01 0.11 9.70 -38.89 -0.38 -0.27 16
10 C -0.19 -2.25 5.89 -104.82 -0.62 -2.87 16
11 C 0.52 7.31 7.90 34.52 0.27 7.58 16
12 O -0.51 -7.98 16.20 -19.26 -0.31 -8.30 16
13 O -0.34 -5.15 9.46 -43.37 -0.41 -5.56 16
14 C 0.08 1.13 5.85 37.16 0.22 1.35 16
15 C 0.06 1.05 6.33 37.16 0.24 1.28 16
16 O -0.39 -9.08 10.30 -38.80 -0.40 -9.48 16
17 C 0.19 5.17 5.69 36.01 0.20 5.37 16
18 C -0.52 -14.88 9.43 -34.44 -0.32 -15.21 16
19 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16
20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
21 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16
22 Si 0.91 21.55 29.54 -169.99 -5.02 16.52 16
23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16
26 C 0.20 2.35 10.78 -17.13 -0.18 2.16 16
27 N -0.51 -6.21 7.61 -11.98 -0.09 -6.30 16
28 N -0.29 -3.40 12.07 33.69 0.41 -3.00 16
29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16
30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16
32 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16
33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.11 1.11 5.84 -51.93 -0.30 0.81 16
36 H 0.15 1.42 7.89 -52.49 -0.41 1.00 16
37 H 0.16 1.38 7.73 -52.49 -0.41 0.98 16
38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16
39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16
41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
42 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
43 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16
44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
45 H 0.19 2.10 7.61 -52.49 -0.40 1.70 16
LS Contribution 395.63 15.07 5.96 5.96
Total: -1.00 -34.32 395.63 -8.34 -42.66
By element:
Atomic # 1 Polarization: 3.52 SS G_CDS: -6.14 Total: -2.62 kcal
Atomic # 6 Polarization: 2.92 SS G_CDS: -3.04 Total: -0.12 kcal
Atomic # 7 Polarization: -40.09 SS G_CDS: 1.02 Total: -39.07 kcal
Atomic # 8 Polarization: -22.22 SS G_CDS: -1.12 Total: -23.34 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -34.32 -8.34 -42.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815189218.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.756 kcal
(2) G-P(sol) polarization free energy of solvation -34.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds