Wall clock time and date at job start Wed Apr 1 2020 03:13:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.40001 * 125.80910 * 2 1
4 4 C 1.35244 * 107.96889 * 180.02562 * 3 2 1
5 5 C 1.50703 * 126.19652 * 179.97438 * 4 3 2
6 6 N 1.35921 * 107.60746 * 0.22898 * 4 3 2
7 7 C 1.39468 * 126.10780 * 179.77111 * 6 4 3
8 8 C 1.39174 * 119.52005 * 154.72217 * 7 6 4
9 9 C 1.38011 * 119.25849 * 179.77321 * 8 7 6
10 10 C 1.40289 * 118.34988 * 0.49253 * 9 8 7
11 11 C 1.47538 * 120.49908 * 179.77186 * 10 9 8
12 12 O 1.21491 * 119.99984 * 359.97438 * 11 10 9
13 13 O 1.34737 * 119.99789 * 179.97438 * 11 10 9
14 14 C 1.45206 * 117.00024 * 179.97438 * 13 11 10
15 15 C 1.52995 * 109.46962 * 179.97438 * 14 13 11
16 16 O 1.42897 * 109.47132 * 65.00248 * 15 14 13
17 17 C 1.42903 * 114.00216 * 179.97438 * 16 15 14
18 18 C 1.50703 * 109.47298 * 179.97438 * 17 16 15
19 19 H 1.07998 * 119.99649 * 0.02562 * 18 17 16
20 20 C 1.37870 * 120.00083 * 180.02562 * 18 17 16
21 21 N 1.31517 * 120.00296 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 119.99919 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47308 * 89.99989 * 22 20 18
24 24 H 1.48508 * 109.46848 * 209.99944 * 22 20 18
25 25 H 1.48495 * 109.47012 * 329.99313 * 22 20 18
26 26 C 1.39612 * 118.99573 * 359.75387 * 10 9 8
27 27 N 1.31614 * 120.63224 * 359.97438 * 26 10 9
28 28 N 1.30791 * 125.81116 * 180.02562 * 2 1 3
29 29 H 1.08996 * 109.46948 * 90.00039 * 1 2 3
30 30 H 1.09004 * 109.47025 * 210.00163 * 1 2 3
31 31 H 1.09005 * 109.47028 * 329.99939 * 1 2 3
32 32 H 1.07994 * 126.02080 * 0.04233 * 3 2 1
33 33 H 1.09002 * 109.47152 * 90.02669 * 5 4 3
34 34 H 1.09001 * 109.46980 * 330.02770 * 5 4 3
35 35 H 1.09004 * 109.47113 * 210.02751 * 5 4 3
36 36 H 1.08001 * 120.37134 * 0.02928 * 8 7 6
37 37 H 1.07997 * 120.82876 * 180.24663 * 9 8 7
38 38 H 1.08998 * 109.46859 * 300.00230 * 14 13 11
39 39 H 1.09000 * 109.46784 * 59.99944 * 14 13 11
40 40 H 1.09008 * 109.46965 * 184.99985 * 15 14 13
41 41 H 1.08997 * 109.47743 * 305.00360 * 15 14 13
42 42 H 1.09000 * 109.47366 * 300.00496 * 17 16 15
43 43 H 1.09001 * 109.46732 * 60.00107 * 17 16 15
44 44 H 0.96996 * 120.00586 * 179.97438 * 21 20 18
45 45 H 1.08000 * 119.68184 * 179.97438 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3262 1.1354 0.0000
4 6 3.6136 0.7210 -0.0006
5 6 4.8334 1.6061 -0.0013
6 7 3.6081 -0.6382 -0.0061
7 6 4.7315 -1.4646 -0.0130
8 6 4.6365 -2.7552 0.4992
9 6 5.7504 -3.5700 0.4854
10 6 6.9455 -3.0558 -0.0394
11 6 8.1661 -3.8839 -0.0728
12 8 8.1412 -5.0201 0.3566
13 8 9.3083 -3.3800 -0.5795
14 6 10.4701 -4.2511 -0.5798
15 6 11.6623 -3.5108 -1.1893
16 8 12.0168 -2.4082 -0.3523
17 6 13.1259 -1.6462 -0.8334
18 6 13.4102 -0.5152 0.1211
19 1 12.8048 -0.3911 1.0068
20 6 14.4432 0.3609 -0.1363
21 7 15.1808 0.2093 -1.2146
22 14 14.7960 1.7623 1.0473
23 1 15.7668 1.3093 2.0756
24 1 15.3676 2.9105 0.2986
25 1 13.5341 2.1815 1.7083
26 6 6.9622 -1.7488 -0.5299
27 7 5.8745 -1.0081 -0.5021
28 7 2.2723 -1.0606 -0.0005
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3633 0.8900 0.5139
32 1 1.9894 2.1615 0.0006
33 1 5.1283 1.8192 1.0262
34 1 4.6044 2.5399 -0.5148
35 1 5.6497 1.0992 -0.5159
36 1 3.7006 -3.1165 0.8992
37 1 5.7042 -4.5771 0.8726
38 1 10.7067 -4.5414 0.4438
39 1 10.2559 -5.1421 -1.1699
40 1 12.5095 -4.1919 -1.2712
41 1 11.3943 -3.1435 -2.1798
42 1 14.0033 -2.2887 -0.9077
43 1 12.8885 -1.2403 -1.8167
44 1 15.9073 0.8259 -1.3959
45 1 7.8763 -1.3416 -0.9360
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815189218.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:13:17
Heat of formation + Delta-G solvation = -32.909564 kcal
Electronic energy + Delta-G solvation = -28414.828730 eV
Core-core repulsion = 24206.033268 eV
Total energy + Delta-G solvation = -4208.795462 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.85548 -41.84356 -40.73883 -38.73376 -37.49205 -35.46864 -34.93359 -34.02091
-33.40481 -32.13110 -31.33858 -29.30914 -28.86914 -28.08037 -25.71127 -25.13774
-24.54206 -23.67727 -22.43026 -21.50372 -20.95320 -19.36602 -18.82835 -18.70766
-18.20496 -17.93540 -17.45241 -17.04782 -16.72572 -16.34985 -16.22782 -16.03739
-15.53273 -15.24313 -15.02378 -14.79791 -14.58273 -14.36540 -14.32683 -14.11449
-14.09570 -13.80207 -13.73943 -13.33547 -13.23379 -13.21350 -12.91438 -12.83211
-12.70588 -12.48056 -12.08737 -11.86462 -11.76551 -11.73237 -11.42450 -11.26828
-11.17715 -10.89248 -10.82633 -10.25287 -10.03900 -9.50843 -8.31387 -6.43032
-1.02028 -0.11192 0.59482 0.91113 1.36960 1.41087 1.43185 1.45743
1.55272 1.63801 2.34917 2.44190 3.00376 3.02706 3.07498 3.23472
3.37312 3.55072 3.62285 3.70276 3.85231 3.92964 4.08166 4.13233
4.40038 4.42606 4.43546 4.48857 4.56854 4.64916 4.66499 4.67417
4.77544 4.81035 4.84775 4.87915 4.99539 5.06776 5.13452 5.19337
5.25452 5.26708 5.55492 5.58014 5.91526 5.96526 6.19433 6.48999
6.54107 6.64109 6.81084 7.28414 8.80544
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010824 B = 0.002217 C = 0.001888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2586.206418 B =12625.371208 C =14828.796921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.093 3.907
3 C -0.263 4.263
4 C 0.095 3.905
5 C -0.106 4.106
6 N -0.348 5.348
7 C 0.390 3.610
8 C -0.172 4.172
9 C 0.023 3.977
10 C -0.198 4.198
11 C 0.521 3.479
12 O -0.526 6.526
13 O -0.349 6.349
14 C 0.080 3.920
15 C 0.052 3.948
16 O -0.408 6.408
17 C 0.208 3.792
18 C -0.548 4.548
19 H 0.060 0.940
20 C 0.007 3.993
21 N -0.928 5.928
22 Si 0.980 3.020
23 H -0.269 1.269
24 H -0.274 1.274
25 H -0.265 1.265
26 C 0.198 3.802
27 N -0.517 5.517
28 N -0.317 5.317
29 H 0.093 0.907
30 H 0.078 0.922
31 H 0.105 0.895
32 H 0.184 0.816
33 H 0.082 0.918
34 H 0.106 0.894
35 H 0.089 0.911
36 H 0.167 0.833
37 H 0.177 0.823
38 H 0.075 0.925
39 H 0.113 0.887
40 H 0.083 0.917
41 H 0.059 0.941
42 H -0.008 1.008
43 H -0.009 1.009
44 H 0.271 0.729
45 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.559 -1.922 1.449 28.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.076 4.076
3 C -0.290 4.290
4 C -0.026 4.026
5 C -0.164 4.164
6 N -0.127 5.127
7 C 0.163 3.837
8 C -0.194 4.194
9 C -0.002 4.002
10 C -0.202 4.202
11 C 0.366 3.634
12 O -0.417 6.417
13 O -0.265 6.265
14 C 0.007 3.993
15 C -0.024 4.024
16 O -0.328 6.328
17 C 0.133 3.867
18 C -0.585 4.585
19 H 0.078 0.922
20 C -0.192 4.192
21 N -0.568 5.568
22 Si 0.803 3.197
23 H -0.194 1.194
24 H -0.199 1.199
25 H -0.190 1.190
26 C 0.039 3.961
27 N -0.231 5.231
28 N -0.137 5.137
29 H 0.112 0.888
30 H 0.097 0.903
31 H 0.123 0.877
32 H 0.201 0.799
33 H 0.101 0.899
34 H 0.124 0.876
35 H 0.107 0.893
36 H 0.184 0.816
37 H 0.194 0.806
38 H 0.094 0.906
39 H 0.131 0.869
40 H 0.101 0.899
41 H 0.077 0.923
42 H 0.010 0.990
43 H 0.009 0.991
44 H 0.079 0.921
45 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -28.356 -2.581 1.309 28.503
hybrid contribution 0.893 0.312 0.302 0.993
sum -27.463 -2.270 1.611 27.604
Atomic orbital electron populations
1.20432 0.83052 1.05019 1.04542 1.23341 0.98983 0.90189 0.95108
1.21704 0.90082 1.01415 1.15829 1.22078 0.99170 0.83271 0.98051
1.20814 0.93136 0.98318 1.04176 1.45770 1.03784 1.04381 1.58731
1.18278 0.84718 0.88570 0.92131 1.21699 1.01509 0.92641 1.03577
1.21795 0.88462 1.00651 0.89330 1.20122 0.93071 0.96610 1.10402
1.20867 0.83558 0.84981 0.73948 1.90817 1.85772 1.19813 1.45306
1.86611 1.19133 1.46638 1.74099 1.23281 0.80791 0.92001 1.03241
1.22665 0.95361 0.89899 0.94505 1.87860 1.52172 1.42912 1.49869
1.19866 0.83087 0.89663 0.94086 1.21372 1.15990 1.12198 1.08966
0.92178 1.25913 0.94978 1.00674 0.97585 1.70053 1.20236 1.39092
1.27374 0.85228 0.78726 0.77540 0.78208 1.19425 1.19909 1.18957
1.23233 0.95273 0.88286 0.89304 1.67141 0.98845 1.38185 1.18882
1.77413 0.84454 1.23742 1.28057 0.88807 0.90306 0.87653 0.79880
0.89896 0.87562 0.89259 0.81572 0.80597 0.90620 0.86946 0.89918
0.92315 0.99041 0.99112 0.92054 0.79303
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.61 10.44 71.24 0.74 0.13 16
2 C 0.09 1.62 7.21 43.14 0.31 1.93 16
3 C -0.26 -4.42 10.65 22.01 0.23 -4.18 16
4 C 0.09 2.00 6.89 41.24 0.28 2.28 16
5 C -0.11 -1.88 9.98 71.24 0.71 -1.17 16
6 N -0.35 -8.47 3.77 -180.41 -0.68 -9.15 16
7 C 0.39 9.51 7.35 132.90 0.98 10.48 16
8 C -0.17 -3.53 9.71 22.44 0.22 -3.31 16
9 C 0.02 0.46 9.70 22.71 0.22 0.68 16
10 C -0.20 -4.73 5.89 -19.99 -0.12 -4.85 16
11 C 0.52 14.60 7.90 70.28 0.56 15.16 16
12 O -0.53 -16.09 16.20 19.87 0.32 -15.77 16
13 O -0.35 -10.68 9.46 -53.81 -0.51 -11.19 16
14 C 0.08 2.30 5.85 71.98 0.42 2.73 16
15 C 0.05 1.79 6.33 71.98 0.46 2.25 16
16 O -0.41 -19.29 10.30 -145.57 -1.50 -20.79 16
17 C 0.21 11.36 5.69 71.24 0.41 11.76 16
18 C -0.55 -32.17 9.43 25.60 0.24 -31.93 16
19 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16
20 C 0.01 0.41 5.46 84.65 0.46 0.87 16
21 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16
22 Si 0.98 43.92 29.54 68.60 2.03 45.94 16
23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16
25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
26 C 0.20 4.79 10.78 85.06 0.92 5.70 16
27 N -0.52 -12.92 7.61 -191.81 -1.46 -14.38 16
28 N -0.32 -7.33 12.07 -47.32 -0.57 -7.90 16
29 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16
30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16
32 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16
33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16
35 H 0.09 1.91 5.84 -2.38 -0.01 1.89 16
36 H 0.17 2.94 7.89 -2.91 -0.02 2.91 16
37 H 0.18 2.83 7.73 -2.91 -0.02 2.81 16
38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
39 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16
40 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16
41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16
43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16
44 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16
45 H 0.19 4.41 7.61 -2.91 -0.02 4.39 16
Total: -1.00 -74.14 395.63 5.96 -68.17
By element:
Atomic # 1 Polarization: 10.12 SS G_CDS: 1.01 Total: 11.13 kcal
Atomic # 6 Polarization: 1.50 SS G_CDS: 7.04 Total: 8.54 kcal
Atomic # 7 Polarization: -83.62 SS G_CDS: -2.43 Total: -86.04 kcal
Atomic # 8 Polarization: -46.06 SS G_CDS: -1.69 Total: -47.74 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal
Total: -74.14 5.96 -68.17 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815189218.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.264 kcal
(2) G-P(sol) polarization free energy of solvation -74.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.874 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds