Wall clock time and date at job start Wed Apr 1 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36686 * 126.60719 * 2 1 4 4 C 1.47374 * 125.77631 * 0.05796 * 3 2 1 5 5 O 1.21510 * 119.99800 * 359.97438 * 4 3 2 6 6 O 1.34753 * 119.99793 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99926 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47398 * 180.02562 * 7 6 4 9 9 O 1.42902 * 109.46935 * 64.99935 * 8 7 6 10 10 C 1.42903 * 113.99944 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46972 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00429 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99650 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00391 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99895 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47239 * 89.99757 * 15 13 11 17 17 H 1.48501 * 109.46977 * 209.99772 * 15 13 11 18 18 H 1.48502 * 109.47078 * 329.99615 * 15 13 11 19 19 N 1.34461 * 108.44789 * 180.02562 * 3 2 1 20 20 N 1.28755 * 109.56521 * 359.71066 * 19 3 2 21 21 N 1.35049 * 126.60427 * 180.02562 * 2 1 3 22 22 C 1.40225 * 126.60405 * 359.97438 * 21 2 1 23 23 C 1.38827 * 120.06428 * 324.72279 * 22 21 2 24 24 C 1.38125 * 119.93584 * 179.74487 * 23 22 21 25 25 C 1.38281 * 120.06303 * 0.55324 * 24 23 22 26 26 C 1.50696 * 119.93716 * 179.71856 * 25 24 23 27 27 C 1.38280 * 120.12744 * 359.70169 * 25 24 23 28 28 C 1.38119 * 120.07242 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.46986 * 269.97428 * 1 2 3 30 30 H 1.09000 * 109.47041 * 29.97433 * 1 2 3 31 31 H 1.09001 * 109.47101 * 149.97243 * 1 2 3 32 32 H 1.09005 * 109.47248 * 299.99971 * 7 6 4 33 33 H 1.08998 * 109.47381 * 59.99986 * 7 6 4 34 34 H 1.08997 * 109.47122 * 185.00109 * 8 7 6 35 35 H 1.09001 * 109.47203 * 305.00130 * 8 7 6 36 36 H 1.08994 * 109.47515 * 300.00497 * 10 9 8 37 37 H 1.08997 * 109.46450 * 60.00233 * 10 9 8 38 38 H 0.97005 * 120.00318 * 180.02562 * 14 13 11 39 39 H 1.08003 * 120.03789 * 0.02562 * 23 22 21 40 40 H 1.07995 * 119.97616 * 180.27455 * 24 23 22 41 41 H 1.08998 * 109.47619 * 269.97913 * 26 25 24 42 42 H 1.09004 * 109.46792 * 29.98386 * 26 25 24 43 43 H 1.09000 * 109.46990 * 149.97445 * 26 25 24 44 44 H 1.08010 * 119.96551 * 180.02562 * 27 25 24 45 45 H 1.08000 * 120.03763 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0972 0.0000 4 6 1.8761 2.5019 0.0012 5 8 0.6892 2.7624 0.0019 6 8 2.7844 3.4972 0.0016 7 6 2.2732 4.8562 0.0022 8 6 3.4437 5.8415 0.0019 9 8 4.1742 5.7129 -1.2195 10 6 5.2944 6.5943 -1.3223 11 6 5.9870 6.3744 -2.6426 12 1 5.6093 5.6359 -3.3342 13 6 7.1028 7.1162 -2.9676 14 7 7.5625 8.0159 -2.1257 15 14 7.9609 6.8443 -4.6044 16 1 7.3707 7.7436 -5.6282 17 1 9.4086 7.1416 -4.4598 18 1 7.7856 5.4313 -5.0265 19 7 3.5997 0.6782 -0.0006 20 7 3.6313 -0.6090 0.0052 21 7 2.3123 -1.0841 -0.0005 22 6 1.9072 -2.4266 -0.0006 23 6 0.7674 -2.8092 0.6937 24 6 0.3679 -4.1314 0.6874 25 6 1.1083 -5.0755 0.0000 26 6 0.6733 -6.5183 0.0004 27 6 2.2469 -4.6983 -0.6880 28 6 2.6483 -3.3767 -0.6901 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6643 5.0158 -0.8877 33 1 1.6644 5.0150 0.8923 34 1 3.0625 6.8586 0.0920 35 1 4.1017 5.6243 0.8434 36 1 4.9513 7.6269 -1.2599 37 1 5.9908 6.3930 -0.5084 38 1 8.3474 8.5380 -2.3545 39 1 0.1912 -2.0730 1.2344 40 1 -0.5211 -4.4289 1.2236 41 1 1.1332 -7.0364 0.8419 42 1 -0.4118 -6.5706 0.0906 43 1 0.9835 -6.9916 -0.9312 44 1 2.8230 -5.4379 -1.2244 45 1 3.5379 -3.0827 -1.2273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815195199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:14 Heat of formation + Delta-G solvation = -10.105419 kcal Electronic energy + Delta-G solvation = -28425.015758 eV Core-core repulsion = 24217.209158 eV Total energy + Delta-G solvation = -4207.806600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.79069 -40.20029 -39.81916 -37.03218 -36.02975 -35.60134 -33.19217 -32.70808 -31.90179 -31.57096 -30.14426 -28.42740 -27.32269 -26.84902 -24.50797 -23.54885 -23.19847 -22.35153 -21.92062 -21.15692 -20.63330 -18.86884 -17.09060 -16.91752 -16.76761 -16.30959 -16.26008 -16.10845 -15.59579 -15.16274 -14.90989 -14.57827 -14.46299 -14.37235 -14.25813 -14.22172 -13.65566 -13.47533 -13.42934 -13.03180 -12.83357 -12.80361 -12.62467 -12.22961 -12.18365 -11.89674 -11.78941 -11.44205 -11.37033 -11.04361 -10.89540 -10.79890 -10.74332 -10.50823 -10.34142 -9.99046 -9.67704 -9.57782 -9.05979 -8.97419 -8.80646 -8.14120 -6.05571 -4.06576 0.06487 0.67146 1.06779 1.42296 1.56405 2.67095 2.92746 3.00763 3.35171 3.39789 3.46518 3.81375 4.01249 4.16019 4.18973 4.27749 4.38584 4.40564 4.48051 4.66007 4.78548 4.81262 4.88015 4.99739 5.02433 5.05574 5.22989 5.24823 5.30814 5.31105 5.33795 5.36994 5.50203 5.55926 5.59722 5.75231 5.90749 5.92128 5.98029 6.01615 6.14954 6.38884 6.51996 7.12484 7.47463 7.57486 7.84811 7.87100 8.19522 8.59904 9.06136 9.57814 11.06029 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.001942 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.062277 B =14415.024700 C =15860.594574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.133 3.867 3 C -0.082 4.082 4 C 0.558 3.442 5 O -0.511 6.511 6 O -0.319 6.319 7 C 0.074 3.926 8 C 0.061 3.939 9 O -0.390 6.390 10 C 0.194 3.806 11 C -0.513 4.513 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.908 3.092 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 N -0.162 5.162 20 N -0.055 5.055 21 N -0.317 5.317 22 C 0.123 3.877 23 C -0.113 4.113 24 C -0.102 4.102 25 C -0.075 4.075 26 C -0.118 4.118 27 C -0.103 4.103 28 C -0.091 4.091 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.669 -28.435 8.183 35.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.002 4.002 3 C -0.218 4.218 4 C 0.400 3.600 5 O -0.400 6.400 6 O -0.233 6.233 7 C 0.001 3.999 8 C -0.016 4.016 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 N -0.036 5.036 20 N -0.033 5.033 21 N -0.096 5.096 22 C 0.032 3.968 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.076 4.076 26 C -0.175 4.175 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.155 0.845 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.392 -28.626 8.050 34.965 hybrid contribution -0.254 0.545 -0.546 0.812 sum -18.646 -28.082 7.503 34.533 Atomic orbital electron populations 1.20920 0.84254 1.06049 1.04813 1.21898 0.96240 0.85620 0.96436 1.20035 0.89304 0.92606 1.19869 1.19271 0.83810 0.84310 0.72562 1.90802 1.17260 1.84347 1.47584 1.86756 1.38074 1.16079 1.82360 1.23320 0.96984 0.76884 1.02715 1.22320 0.92974 0.95654 0.90690 1.87929 1.44655 1.63688 1.34690 1.20233 0.82309 0.87866 0.97563 1.21059 1.11014 1.21084 1.01955 0.91512 1.24939 0.96765 0.94965 0.97837 1.69961 1.24373 1.23628 1.35896 0.86334 0.78383 0.78765 0.83012 1.20516 1.21077 1.19592 1.74879 1.18407 1.03171 1.07124 1.82247 0.94752 1.03445 1.22895 1.47608 1.07061 1.04857 1.50051 1.17517 0.97557 0.79663 1.02060 1.21150 0.95895 0.97555 0.98775 1.20934 1.00305 0.91400 0.99470 1.20151 0.94683 0.96597 0.96161 1.20855 1.02033 0.91490 1.03084 1.21019 0.96474 0.95156 0.99470 1.21079 0.99875 0.92355 0.97754 0.88537 0.86698 0.89893 0.90205 0.90147 0.91805 0.93058 0.97627 0.97417 0.92700 0.84532 0.84541 0.90578 0.91068 0.91038 0.84522 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 8.07 36.00 0.29 -0.50 16 2 C 0.13 1.59 6.85 -81.74 -0.56 1.03 16 3 C -0.08 -1.27 7.02 -83.56 -0.59 -1.86 16 4 C 0.56 9.17 7.96 34.45 0.27 9.45 16 5 O -0.51 -8.03 14.51 -19.27 -0.28 -8.31 16 6 O -0.32 -5.93 10.20 -43.42 -0.44 -6.37 16 7 C 0.07 1.22 5.85 37.16 0.22 1.44 16 8 C 0.06 1.17 6.33 37.16 0.24 1.40 16 9 O -0.39 -9.88 10.30 -38.80 -0.40 -10.28 16 10 C 0.19 5.51 5.69 36.01 0.20 5.72 16 11 C -0.51 -15.67 9.43 -34.44 -0.32 -16.00 16 12 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 15 Si 0.91 22.56 29.54 -169.99 -5.02 17.54 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 N -0.16 -2.81 12.39 32.84 0.41 -2.41 16 20 N -0.05 -0.84 13.57 60.35 0.82 -0.02 16 21 N -0.32 -3.82 3.75 -6.71 -0.03 -3.84 16 22 C 0.12 1.12 6.31 -83.58 -0.53 0.59 16 23 C -0.11 -0.73 8.36 -39.40 -0.33 -1.06 16 24 C -0.10 -0.49 9.69 -39.61 -0.38 -0.88 16 25 C -0.08 -0.37 5.88 -104.59 -0.62 -0.98 16 26 C -0.12 -0.30 10.01 36.00 0.36 0.06 16 27 C -0.10 -0.59 9.69 -39.61 -0.38 -0.97 16 28 C -0.09 -0.74 9.79 -39.41 -0.39 -1.12 16 29 H 0.10 0.55 7.80 -51.93 -0.41 0.15 16 30 H 0.11 1.03 6.43 -51.93 -0.33 0.69 16 31 H 0.08 0.47 7.00 -51.93 -0.36 0.10 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.14 0.68 6.22 -52.48 -0.33 0.36 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 41 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.07 0.12 8.08 -51.93 -0.42 -0.30 16 43 H 0.07 0.14 8.08 -51.93 -0.42 -0.28 16 44 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -36.57 392.16 -6.95 -43.52 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -6.04 Total: -6.87 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.61 Total: -2.12 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 1.94 Total: -33.03 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.12 Total: -24.95 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.57 -6.95 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.419 kcal (2) G-P(sol) polarization free energy of solvation -36.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds