Wall clock time and date at job start Wed Apr 1 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36686 * 126.60719 * 2 1 4 4 C 1.47374 * 125.77631 * 0.05796 * 3 2 1 5 5 O 1.21510 * 119.99800 * 359.97438 * 4 3 2 6 6 O 1.34753 * 119.99793 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99926 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47398 * 180.02562 * 7 6 4 9 9 O 1.42902 * 109.46935 * 64.99935 * 8 7 6 10 10 C 1.42903 * 113.99944 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46972 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00429 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99650 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00391 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99895 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47239 * 89.99757 * 15 13 11 17 17 H 1.48501 * 109.46977 * 209.99772 * 15 13 11 18 18 H 1.48502 * 109.47078 * 329.99615 * 15 13 11 19 19 N 1.34461 * 108.44789 * 180.02562 * 3 2 1 20 20 N 1.28755 * 109.56521 * 359.71066 * 19 3 2 21 21 N 1.35049 * 126.60427 * 180.02562 * 2 1 3 22 22 C 1.40225 * 126.60405 * 359.97438 * 21 2 1 23 23 C 1.38827 * 120.06428 * 324.72279 * 22 21 2 24 24 C 1.38125 * 119.93584 * 179.74487 * 23 22 21 25 25 C 1.38281 * 120.06303 * 0.55324 * 24 23 22 26 26 C 1.50696 * 119.93716 * 179.71856 * 25 24 23 27 27 C 1.38280 * 120.12744 * 359.70169 * 25 24 23 28 28 C 1.38119 * 120.07242 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.46986 * 269.97428 * 1 2 3 30 30 H 1.09000 * 109.47041 * 29.97433 * 1 2 3 31 31 H 1.09001 * 109.47101 * 149.97243 * 1 2 3 32 32 H 1.09005 * 109.47248 * 299.99971 * 7 6 4 33 33 H 1.08998 * 109.47381 * 59.99986 * 7 6 4 34 34 H 1.08997 * 109.47122 * 185.00109 * 8 7 6 35 35 H 1.09001 * 109.47203 * 305.00130 * 8 7 6 36 36 H 1.08994 * 109.47515 * 300.00497 * 10 9 8 37 37 H 1.08997 * 109.46450 * 60.00233 * 10 9 8 38 38 H 0.97005 * 120.00318 * 180.02562 * 14 13 11 39 39 H 1.08003 * 120.03789 * 0.02562 * 23 22 21 40 40 H 1.07995 * 119.97616 * 180.27455 * 24 23 22 41 41 H 1.08998 * 109.47619 * 269.97913 * 26 25 24 42 42 H 1.09004 * 109.46792 * 29.98386 * 26 25 24 43 43 H 1.09000 * 109.46990 * 149.97445 * 26 25 24 44 44 H 1.08010 * 119.96551 * 180.02562 * 27 25 24 45 45 H 1.08000 * 120.03763 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0972 0.0000 4 6 1.8761 2.5019 0.0012 5 8 0.6892 2.7624 0.0019 6 8 2.7844 3.4972 0.0016 7 6 2.2732 4.8562 0.0022 8 6 3.4437 5.8415 0.0019 9 8 4.1742 5.7129 -1.2195 10 6 5.2944 6.5943 -1.3223 11 6 5.9870 6.3744 -2.6426 12 1 5.6093 5.6359 -3.3342 13 6 7.1028 7.1162 -2.9676 14 7 7.5625 8.0159 -2.1257 15 14 7.9609 6.8443 -4.6044 16 1 7.3707 7.7436 -5.6282 17 1 9.4086 7.1416 -4.4598 18 1 7.7856 5.4313 -5.0265 19 7 3.5997 0.6782 -0.0006 20 7 3.6313 -0.6090 0.0052 21 7 2.3123 -1.0841 -0.0005 22 6 1.9072 -2.4266 -0.0006 23 6 0.7674 -2.8092 0.6937 24 6 0.3679 -4.1314 0.6874 25 6 1.1083 -5.0755 0.0000 26 6 0.6733 -6.5183 0.0004 27 6 2.2469 -4.6983 -0.6880 28 6 2.6483 -3.3767 -0.6901 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6643 5.0158 -0.8877 33 1 1.6644 5.0150 0.8923 34 1 3.0625 6.8586 0.0920 35 1 4.1017 5.6243 0.8434 36 1 4.9513 7.6269 -1.2599 37 1 5.9908 6.3930 -0.5084 38 1 8.3474 8.5380 -2.3545 39 1 0.1912 -2.0730 1.2344 40 1 -0.5211 -4.4289 1.2236 41 1 1.1332 -7.0364 0.8419 42 1 -0.4118 -6.5706 0.0906 43 1 0.9835 -6.9916 -0.9312 44 1 2.8230 -5.4379 -1.2244 45 1 3.5379 -3.0827 -1.2273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815195199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:13 Heat of formation + Delta-G solvation = -33.355503 kcal Electronic energy + Delta-G solvation = -28426.023957 eV Core-core repulsion = 24217.209158 eV Total energy + Delta-G solvation = -4208.814799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.78889 -41.35860 -40.46380 -38.75589 -37.52053 -36.38928 -34.96019 -33.99486 -32.56280 -32.12276 -31.63884 -29.45685 -28.90195 -27.80841 -25.61293 -24.59414 -24.30126 -23.79496 -23.26135 -21.92811 -21.68604 -19.81756 -18.71818 -18.22893 -18.08527 -17.69722 -17.55844 -16.93910 -16.61856 -16.40486 -16.26223 -16.10245 -15.66024 -15.31381 -15.08069 -14.78761 -14.67127 -14.46384 -14.26223 -14.10810 -14.03381 -13.68747 -13.39839 -13.34533 -13.16157 -13.04378 -12.93542 -12.71836 -12.65227 -12.50628 -12.44962 -12.19785 -12.04867 -11.82719 -11.75563 -11.66963 -11.29712 -10.90612 -10.57646 -10.27567 -10.13682 -9.56208 -8.33672 -6.45639 -0.66757 0.11464 0.21944 0.44620 0.71084 1.37523 1.40928 1.49257 1.53059 1.73915 2.33327 2.50866 2.89499 2.99787 3.07156 3.22295 3.37108 3.46550 3.75306 3.83864 3.89834 3.91834 4.11958 4.14160 4.24554 4.36791 4.37605 4.43103 4.47391 4.50745 4.58164 4.67060 4.72374 4.84155 4.88798 4.92050 4.95902 5.04258 5.16530 5.18084 5.25063 5.27624 5.45532 5.51581 5.52724 5.84163 5.94025 6.39653 6.49994 6.70882 6.78752 7.25632 8.78547 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.001942 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.062277 B =14415.024700 C =15860.594574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.151 3.849 3 C -0.114 4.114 4 C 0.559 3.441 5 O -0.507 6.507 6 O -0.349 6.349 7 C 0.078 3.922 8 C 0.051 3.949 9 O -0.411 6.411 10 C 0.208 3.792 11 C -0.552 4.552 12 H 0.057 0.943 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.270 1.270 19 N -0.206 5.206 20 N -0.082 5.082 21 N -0.303 5.303 22 C 0.083 3.917 23 C -0.108 4.108 24 C -0.098 4.098 25 C -0.067 4.067 26 C -0.118 4.118 27 C -0.106 4.106 28 C -0.107 4.107 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.052 0.948 36 H -0.004 1.004 37 H -0.013 1.013 38 H 0.272 0.728 39 H 0.154 0.846 40 H 0.170 0.830 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.068 -30.829 8.154 38.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.014 3.986 3 C -0.251 4.251 4 C 0.402 3.598 5 O -0.395 6.395 6 O -0.264 6.264 7 C 0.005 3.995 8 C -0.025 4.025 9 O -0.331 6.331 10 C 0.133 3.867 11 C -0.590 4.590 12 H 0.075 0.925 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.194 1.194 19 N -0.079 5.079 20 N -0.060 5.060 21 N -0.082 5.082 22 C -0.007 4.007 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.068 4.068 26 C -0.175 4.175 27 C -0.125 4.125 28 C -0.126 4.126 29 H 0.143 0.857 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.014 0.986 37 H 0.004 0.996 38 H 0.080 0.920 39 H 0.172 0.828 40 H 0.187 0.813 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.172 0.828 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.803 -31.043 8.038 38.223 hybrid contribution 0.358 1.087 -0.448 1.229 sum -20.445 -29.955 7.589 37.053 Atomic orbital electron populations 1.21140 0.80947 1.06843 1.06767 1.22465 0.97740 0.84374 0.93990 1.20212 0.89617 0.93013 1.22298 1.19367 0.83682 0.84323 0.72423 1.90779 1.16703 1.84395 1.47668 1.86733 1.39623 1.17123 1.82943 1.23372 0.95750 0.75765 1.04606 1.22692 0.93403 0.98199 0.88243 1.87873 1.44103 1.63176 1.37973 1.19864 0.82867 0.87756 0.96169 1.21382 1.12598 1.21963 1.03016 0.92511 1.25933 0.97002 0.94116 1.02025 1.70055 1.24802 1.23952 1.37839 0.85203 0.77544 0.78862 0.77916 1.18894 1.19610 1.19439 1.74829 1.20050 1.04257 1.08808 1.82121 0.96941 1.02838 1.24136 1.47762 1.05987 1.06129 1.48297 1.17950 0.99553 0.78334 1.04830 1.21399 0.94676 0.98815 0.97912 1.21344 1.01010 0.90413 0.98868 1.20542 0.93674 0.98053 0.94526 1.20938 1.03069 0.89655 1.03803 1.21262 0.97159 0.94330 0.99710 1.21124 0.99695 0.93492 0.98334 0.85686 0.87611 0.87219 0.90103 0.86297 0.89253 0.93002 0.98582 0.99557 0.91951 0.82841 0.81305 0.89741 0.89557 0.90387 0.82789 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 8.07 71.24 0.57 -0.75 16 2 C 0.15 3.58 6.85 41.70 0.29 3.86 16 3 C -0.11 -3.69 7.02 40.78 0.29 -3.41 16 4 C 0.56 18.81 7.96 70.23 0.56 19.37 16 5 O -0.51 -15.67 14.51 19.80 0.29 -15.39 16 6 O -0.35 -13.42 10.20 -53.97 -0.55 -13.97 16 7 C 0.08 2.56 5.85 71.98 0.42 2.98 16 8 C 0.05 1.99 6.33 71.98 0.46 2.44 16 9 O -0.41 -21.61 10.30 -145.57 -1.50 -23.11 16 10 C 0.21 12.29 5.69 71.24 0.41 12.70 16 11 C -0.55 -34.76 9.43 25.60 0.24 -34.51 16 12 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 13 C 0.01 0.48 5.46 84.65 0.46 0.94 16 14 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 15 Si 0.98 46.48 29.54 68.60 2.03 48.50 16 16 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 N -0.21 -7.69 12.39 -50.02 -0.62 -8.31 16 20 N -0.08 -2.69 13.57 37.02 0.50 -2.19 16 21 N -0.30 -7.45 3.75 -175.14 -0.66 -8.11 16 22 C 0.08 1.47 6.31 38.08 0.24 1.71 16 23 C -0.11 -1.12 8.36 22.38 0.19 -0.93 16 24 C -0.10 -0.58 9.69 22.25 0.22 -0.37 16 25 C -0.07 -0.45 5.88 -19.85 -0.12 -0.57 16 26 C -0.12 -0.16 10.01 71.23 0.71 0.55 16 27 C -0.11 -1.06 9.69 22.25 0.22 -0.85 16 28 C -0.11 -1.74 9.79 22.38 0.22 -1.52 16 29 H 0.13 1.01 7.80 -2.39 -0.02 0.99 16 30 H 0.11 1.71 6.43 -2.39 -0.02 1.69 16 31 H 0.11 0.89 7.00 -2.39 -0.02 0.88 16 32 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.12 2.95 8.14 -2.39 -0.02 2.94 16 34 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 38 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 39 H 0.15 0.99 6.22 -2.91 -0.02 0.98 16 40 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 41 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.09 -0.09 8.08 -2.38 -0.02 -0.11 16 43 H 0.08 0.05 8.08 -2.39 -0.02 0.03 16 44 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.12 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -83.35 392.16 6.16 -77.20 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.01 Total: 0.76 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.37 Total: 1.64 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -0.49 Total: -75.64 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -1.76 Total: -52.46 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -83.35 6.16 -77.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.841 kcal (2) G-P(sol) polarization free energy of solvation -83.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds