Wall clock time and date at job start Wed Apr 1 2020 02:49:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.36697 * 126.60248 * 2 1
4 4 C 1.47366 * 125.77976 * 359.97438 * 3 2 1
5 5 O 1.21525 * 119.99926 * 0.30963 * 4 3 2
6 6 O 1.34760 * 120.00205 * 180.30435 * 4 3 2
7 7 C 1.45201 * 116.99934 * 180.02562 * 6 4 3
8 8 C 1.53001 * 109.46767 * 180.02562 * 7 6 4
9 9 O 1.42894 * 109.47309 * 64.99745 * 8 7 6
10 10 C 1.42907 * 114.00030 * 179.97438 * 9 8 7
11 11 C 1.50701 * 109.46994 * 179.97438 * 10 9 8
12 12 H 1.07996 * 120.00419 * 359.97438 * 11 10 9
13 13 C 1.37874 * 119.99577 * 180.02562 * 11 10 9
14 14 N 1.31516 * 120.00442 * 359.97438 * 13 11 10
15 15 Si 1.86802 * 120.00078 * 180.02562 * 13 11 10
16 16 H 1.48494 * 109.47037 * 59.99735 * 15 13 11
17 17 H 1.48494 * 109.47357 * 179.97438 * 15 13 11
18 18 H 1.48504 * 109.46989 * 300.00214 * 15 13 11
19 19 N 1.34459 * 108.44447 * 180.27230 * 3 2 1
20 20 N 1.28753 * 109.56668 * 359.73566 * 19 3 2
21 21 N 1.35037 * 126.60699 * 179.82375 * 2 1 3
22 22 C 1.40223 * 126.60637 * 0.02562 * 21 2 1
23 23 C 1.38853 * 120.06337 * 324.96430 * 22 21 2
24 24 C 1.38100 * 119.93242 * 180.25372 * 23 22 21
25 25 C 1.38297 * 120.07070 * 359.74917 * 24 23 22
26 26 C 1.38263 * 120.12568 * 359.97438 * 25 24 23
27 27 C 1.50703 * 119.96167 * 179.97438 * 26 25 24
28 28 C 1.38141 * 120.06835 * 359.97438 * 26 25 24
29 29 H 1.09001 * 109.46739 * 270.17504 * 1 2 3
30 30 H 1.08996 * 109.47163 * 30.17718 * 1 2 3
31 31 H 1.09005 * 109.46597 * 150.17887 * 1 2 3
32 32 H 1.09000 * 109.46791 * 299.99673 * 7 6 4
33 33 H 1.08995 * 109.47401 * 60.00085 * 7 6 4
34 34 H 1.09003 * 109.46864 * 184.99536 * 8 7 6
35 35 H 1.09002 * 109.47022 * 304.99194 * 8 7 6
36 36 H 1.08998 * 109.46714 * 300.00122 * 10 9 8
37 37 H 1.08996 * 109.46955 * 59.99869 * 10 9 8
38 38 H 0.96999 * 120.00006 * 179.97438 * 14 13 11
39 39 H 1.08003 * 120.03421 * 359.97438 * 23 22 21
40 40 H 1.08007 * 119.96734 * 179.72823 * 24 23 22
41 41 H 1.07996 * 119.94099 * 179.97438 * 25 24 23
42 42 H 1.08994 * 109.47514 * 270.02079 * 27 26 25
43 43 H 1.08999 * 109.47117 * 30.02743 * 27 26 25
44 44 H 1.09010 * 109.46827 * 150.02057 * 27 26 25
45 45 H 1.08002 * 120.03004 * 179.97438 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3221 1.0974 0.0000
4 6 1.8760 2.5019 -0.0005
5 8 0.6891 2.7625 0.0047
6 8 2.7844 3.4974 -0.0067
7 6 2.2730 4.8564 -0.0062
8 6 3.4435 5.8416 -0.0143
9 8 4.1680 5.7106 -1.2390
10 6 5.2877 6.5918 -1.3491
11 6 5.9745 6.3684 -2.6718
12 1 5.5943 5.6275 -3.3594
13 6 7.0888 7.1094 -3.0036
14 7 7.5522 8.0114 -2.1662
15 14 7.9398 6.8331 -4.6435
16 1 6.9858 7.1056 -5.7483
17 1 9.1034 7.7487 -4.7578
18 1 8.4064 5.4258 -4.7281
19 7 3.5997 0.6784 -0.0061
20 7 3.6314 -0.6088 -0.0042
21 7 2.3123 -1.0840 0.0033
22 6 1.9073 -2.4265 0.0070
23 6 0.7641 -2.8063 0.6975
24 6 0.3706 -4.1301 0.7036
25 6 1.1110 -5.0762 0.0186
26 6 2.2466 -4.7000 -0.6746
27 6 3.0509 -5.7342 -1.4193
28 6 2.6446 -3.3772 -0.6853
29 1 -0.3633 0.0031 1.0277
30 1 -0.3633 0.8883 -0.5166
31 1 -0.3633 -0.8916 -0.5111
32 1 1.6597 5.0140 -0.8934
33 1 1.6687 5.0169 0.8865
34 1 3.0627 6.8590 0.0755
35 1 4.1056 5.6262 0.8244
36 1 4.9447 7.6245 -1.2872
37 1 5.9881 6.3923 -0.5382
38 1 8.3364 8.5324 -2.3995
39 1 0.1857 -2.0680 1.2331
40 1 -0.5161 -4.4268 1.2442
41 1 0.8016 -6.1109 0.0251
42 1 3.8122 -6.1478 -0.7580
43 1 2.3911 -6.5328 -1.7582
44 1 3.5313 -5.2698 -2.2807
45 1 3.5320 -3.0841 -1.2267
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815195235.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:49:17
Heat of formation + Delta-G solvation = -9.941661 kcal
Electronic energy + Delta-G solvation = -28506.973217 eV
Core-core repulsion = 24299.173718 eV
Total energy + Delta-G solvation = -4207.799499 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.80127 -40.20145 -39.81377 -37.03360 -36.03025 -35.49950 -33.09334 -32.92930
-32.70295 -30.63161 -29.92495 -28.39568 -27.56625 -26.85620 -24.51585 -24.35404
-22.54164 -22.35022 -21.98552 -21.03239 -20.55288 -18.61366 -17.16737 -16.92766
-16.89837 -16.56474 -16.30122 -16.18396 -15.56667 -15.15690 -14.88451 -14.60738
-14.43372 -14.38947 -14.24834 -13.94193 -13.65483 -13.46548 -13.41549 -13.01160
-12.81255 -12.73237 -12.63324 -12.24718 -12.14103 -11.89543 -11.84562 -11.47663
-11.36818 -11.10706 -10.89751 -10.81626 -10.72677 -10.51585 -10.34454 -9.99508
-9.61156 -9.46083 -9.09089 -9.07136 -8.80280 -8.14029 -6.05402 -4.06520
0.07279 0.64740 1.08238 1.41877 1.54788 2.66612 2.92186 3.01332
3.37539 3.39386 3.44157 3.79780 3.99354 4.15726 4.16902 4.38436
4.41938 4.46639 4.51920 4.59446 4.68901 4.79070 4.92575 4.99219
5.08327 5.09019 5.20727 5.24651 5.27469 5.31051 5.32819 5.49319
5.50650 5.56117 5.66655 5.74865 5.87399 5.91983 5.97832 6.01924
6.14729 6.39158 6.51618 7.12399 7.47420 7.56718 7.84499 7.86537
8.19549 8.59902 9.05789 9.57745 11.06142
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.013370 B = 0.002047 C = 0.001819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2093.777605 B =13675.371660 C =15385.848888
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C 0.134 3.866
3 C -0.082 4.082
4 C 0.558 3.442
5 O -0.511 6.511
6 O -0.319 6.319
7 C 0.074 3.926
8 C 0.061 3.939
9 O -0.390 6.390
10 C 0.195 3.805
11 C -0.513 4.513
12 H 0.066 0.934
13 C 0.056 3.944
14 N -0.899 5.899
15 Si 0.909 3.091
16 H -0.275 1.275
17 H -0.286 1.286
18 H -0.274 1.274
19 N -0.161 5.161
20 N -0.054 5.054
21 N -0.318 5.318
22 C 0.135 3.865
23 C -0.126 4.126
24 C -0.096 4.096
25 C -0.111 4.111
26 C -0.067 4.067
27 C -0.118 4.118
28 C -0.099 4.099
29 H 0.097 0.903
30 H 0.115 0.885
31 H 0.083 0.917
32 H 0.080 0.920
33 H 0.080 0.920
34 H 0.064 0.936
35 H 0.051 0.949
36 H 0.006 0.994
37 H 0.008 0.992
38 H 0.264 0.736
39 H 0.136 0.864
40 H 0.138 0.862
41 H 0.133 0.867
42 H 0.077 0.923
43 H 0.072 0.928
44 H 0.072 0.928
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.808 -28.123 7.820 34.725
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.001 4.001
3 C -0.218 4.218
4 C 0.400 3.600
5 O -0.400 6.400
6 O -0.233 6.233
7 C 0.001 3.999
8 C -0.016 4.016
9 O -0.310 6.310
10 C 0.121 3.879
11 C -0.551 4.551
12 H 0.084 0.916
13 C -0.145 4.145
14 N -0.539 5.539
15 Si 0.736 3.264
16 H -0.201 1.201
17 H -0.212 1.212
18 H -0.200 1.200
19 N -0.035 5.035
20 N -0.033 5.033
21 N -0.097 5.097
22 C 0.044 3.956
23 C -0.146 4.146
24 C -0.114 4.114
25 C -0.130 4.130
26 C -0.067 4.067
27 C -0.174 4.174
28 C -0.118 4.118
29 H 0.115 0.885
30 H 0.133 0.867
31 H 0.101 0.899
32 H 0.098 0.902
33 H 0.099 0.901
34 H 0.082 0.918
35 H 0.069 0.931
36 H 0.024 0.976
37 H 0.026 0.974
38 H 0.074 0.926
39 H 0.154 0.846
40 H 0.155 0.845
41 H 0.150 0.850
42 H 0.096 0.904
43 H 0.091 0.909
44 H 0.091 0.909
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -17.527 -28.304 7.681 34.166
hybrid contribution -0.317 0.513 -0.507 0.788
sum -17.845 -27.791 7.173 33.797
Atomic orbital electron populations
1.20925 0.84224 1.06037 1.04852 1.21907 0.96256 0.85601 0.96334
1.20039 0.89294 0.92613 1.19858 1.19271 0.83815 0.84305 0.72569
1.90808 1.17248 1.84349 1.47574 1.86757 1.38071 1.16083 1.82359
1.23321 0.97001 0.76876 1.02705 1.22320 0.93032 0.95649 0.90635
1.87928 1.44912 1.63634 1.34494 1.20231 0.82311 0.87873 0.97530
1.21014 1.11205 1.20986 1.01933 0.91572 1.24943 0.96758 0.94952
0.97880 1.69952 1.24301 1.23537 1.36079 0.86386 0.78701 0.78185
0.83153 1.20057 1.21181 1.19961 1.74879 1.18413 1.03165 1.07081
1.82252 0.94724 1.03439 1.22864 1.47613 1.07089 1.04855 1.50137
1.17503 0.97199 0.79586 1.01319 1.21152 0.96132 0.97750 0.99568
1.21036 1.00014 0.91595 0.98781 1.21262 0.94637 1.00169 0.96908
1.19872 0.95708 0.93648 0.97510 1.20855 0.99620 0.97058 0.99895
1.20962 1.00274 0.91882 0.98718 0.88507 0.86702 0.89865 0.90202
0.90142 0.91804 0.93058 0.97618 0.97430 0.92640 0.84576 0.84456
0.84959 0.90426 0.90923 0.90935 0.84290
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.79 8.05 36.01 0.29 -0.50 16
2 C 0.13 1.60 6.85 -81.74 -0.56 1.04 16
3 C -0.08 -1.27 7.02 -83.56 -0.59 -1.86 16
4 C 0.56 9.16 7.96 34.44 0.27 9.44 16
5 O -0.51 -8.02 14.52 -19.29 -0.28 -8.30 16
6 O -0.32 -5.92 10.20 -43.44 -0.44 -6.36 16
7 C 0.07 1.22 5.86 37.16 0.22 1.44 16
8 C 0.06 1.17 6.33 37.16 0.24 1.40 16
9 O -0.39 -9.87 10.30 -38.81 -0.40 -10.27 16
10 C 0.19 5.52 5.69 36.01 0.20 5.72 16
11 C -0.51 -15.67 9.43 -34.44 -0.32 -15.99 16
12 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16
13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
14 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16
15 Si 0.91 22.56 29.54 -169.99 -5.02 17.54 16
16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16
18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16
19 N -0.16 -2.80 12.39 32.84 0.41 -2.40 16
20 N -0.05 -0.83 13.57 60.35 0.82 -0.01 16
21 N -0.32 -3.84 3.75 -6.71 -0.03 -3.87 16
22 C 0.13 1.24 6.32 -83.58 -0.53 0.71 16
23 C -0.13 -0.81 8.36 -39.40 -0.33 -1.14 16
24 C -0.10 -0.44 10.04 -39.61 -0.40 -0.84 16
25 C -0.11 -0.52 9.70 -39.55 -0.38 -0.91 16
26 C -0.07 -0.40 5.88 -104.65 -0.62 -1.02 16
27 C -0.12 -0.48 10.01 36.01 0.36 -0.12 16
28 C -0.10 -0.82 9.44 -39.41 -0.37 -1.19 16
29 H 0.10 0.55 7.80 -51.93 -0.41 0.15 16
30 H 0.11 1.02 6.45 -51.93 -0.33 0.69 16
31 H 0.08 0.47 6.98 -51.93 -0.36 0.11 16
32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16
38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
39 H 0.14 0.68 6.20 -52.48 -0.33 0.36 16
40 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16
41 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16
42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16
43 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16
44 H 0.07 0.30 8.09 -51.92 -0.42 -0.12 16
45 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16
LS Contribution 392.12 15.07 5.91 5.91
Total: -1.00 -36.50 392.12 -6.95 -43.45
By element:
Atomic # 1 Polarization: -0.62 SS G_CDS: -6.04 Total: -6.66 kcal
Atomic # 6 Polarization: 0.35 SS G_CDS: -2.61 Total: -2.26 kcal
Atomic # 7 Polarization: -34.97 SS G_CDS: 1.94 Total: -33.04 kcal
Atomic # 8 Polarization: -23.81 SS G_CDS: -1.12 Total: -24.93 kcal
Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -36.50 -6.95 -43.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815195235.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.505 kcal
(2) G-P(sol) polarization free energy of solvation -36.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds