Wall clock time and date at job start Wed Apr 1 2020 02:49:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.36697 * 126.60248 * 2 1
4 4 C 1.47366 * 125.77976 * 359.97438 * 3 2 1
5 5 O 1.21525 * 119.99926 * 0.30963 * 4 3 2
6 6 O 1.34760 * 120.00205 * 180.30435 * 4 3 2
7 7 C 1.45201 * 116.99934 * 180.02562 * 6 4 3
8 8 C 1.53001 * 109.46767 * 180.02562 * 7 6 4
9 9 O 1.42894 * 109.47309 * 64.99745 * 8 7 6
10 10 C 1.42907 * 114.00030 * 179.97438 * 9 8 7
11 11 C 1.50701 * 109.46994 * 179.97438 * 10 9 8
12 12 H 1.07996 * 120.00419 * 359.97438 * 11 10 9
13 13 C 1.37874 * 119.99577 * 180.02562 * 11 10 9
14 14 N 1.31516 * 120.00442 * 359.97438 * 13 11 10
15 15 Si 1.86802 * 120.00078 * 180.02562 * 13 11 10
16 16 H 1.48494 * 109.47037 * 59.99735 * 15 13 11
17 17 H 1.48494 * 109.47357 * 179.97438 * 15 13 11
18 18 H 1.48504 * 109.46989 * 300.00214 * 15 13 11
19 19 N 1.34459 * 108.44447 * 180.27230 * 3 2 1
20 20 N 1.28753 * 109.56668 * 359.73566 * 19 3 2
21 21 N 1.35037 * 126.60699 * 179.82375 * 2 1 3
22 22 C 1.40223 * 126.60637 * 0.02562 * 21 2 1
23 23 C 1.38853 * 120.06337 * 324.96430 * 22 21 2
24 24 C 1.38100 * 119.93242 * 180.25372 * 23 22 21
25 25 C 1.38297 * 120.07070 * 359.74917 * 24 23 22
26 26 C 1.38263 * 120.12568 * 359.97438 * 25 24 23
27 27 C 1.50703 * 119.96167 * 179.97438 * 26 25 24
28 28 C 1.38141 * 120.06835 * 359.97438 * 26 25 24
29 29 H 1.09001 * 109.46739 * 270.17504 * 1 2 3
30 30 H 1.08996 * 109.47163 * 30.17718 * 1 2 3
31 31 H 1.09005 * 109.46597 * 150.17887 * 1 2 3
32 32 H 1.09000 * 109.46791 * 299.99673 * 7 6 4
33 33 H 1.08995 * 109.47401 * 60.00085 * 7 6 4
34 34 H 1.09003 * 109.46864 * 184.99536 * 8 7 6
35 35 H 1.09002 * 109.47022 * 304.99194 * 8 7 6
36 36 H 1.08998 * 109.46714 * 300.00122 * 10 9 8
37 37 H 1.08996 * 109.46955 * 59.99869 * 10 9 8
38 38 H 0.96999 * 120.00006 * 179.97438 * 14 13 11
39 39 H 1.08003 * 120.03421 * 359.97438 * 23 22 21
40 40 H 1.08007 * 119.96734 * 179.72823 * 24 23 22
41 41 H 1.07996 * 119.94099 * 179.97438 * 25 24 23
42 42 H 1.08994 * 109.47514 * 270.02079 * 27 26 25
43 43 H 1.08999 * 109.47117 * 30.02743 * 27 26 25
44 44 H 1.09010 * 109.46827 * 150.02057 * 27 26 25
45 45 H 1.08002 * 120.03004 * 179.97438 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3221 1.0974 0.0000
4 6 1.8760 2.5019 -0.0005
5 8 0.6891 2.7625 0.0047
6 8 2.7844 3.4974 -0.0067
7 6 2.2730 4.8564 -0.0062
8 6 3.4435 5.8416 -0.0143
9 8 4.1680 5.7106 -1.2390
10 6 5.2877 6.5918 -1.3491
11 6 5.9745 6.3684 -2.6718
12 1 5.5943 5.6275 -3.3594
13 6 7.0888 7.1094 -3.0036
14 7 7.5522 8.0114 -2.1662
15 14 7.9398 6.8331 -4.6435
16 1 6.9858 7.1056 -5.7483
17 1 9.1034 7.7487 -4.7578
18 1 8.4064 5.4258 -4.7281
19 7 3.5997 0.6784 -0.0061
20 7 3.6314 -0.6088 -0.0042
21 7 2.3123 -1.0840 0.0033
22 6 1.9073 -2.4265 0.0070
23 6 0.7641 -2.8063 0.6975
24 6 0.3706 -4.1301 0.7036
25 6 1.1110 -5.0762 0.0186
26 6 2.2466 -4.7000 -0.6746
27 6 3.0509 -5.7342 -1.4193
28 6 2.6446 -3.3772 -0.6853
29 1 -0.3633 0.0031 1.0277
30 1 -0.3633 0.8883 -0.5166
31 1 -0.3633 -0.8916 -0.5111
32 1 1.6597 5.0140 -0.8934
33 1 1.6687 5.0169 0.8865
34 1 3.0627 6.8590 0.0755
35 1 4.1056 5.6262 0.8244
36 1 4.9447 7.6245 -1.2872
37 1 5.9881 6.3923 -0.5382
38 1 8.3364 8.5324 -2.3995
39 1 0.1857 -2.0680 1.2331
40 1 -0.5161 -4.4268 1.2442
41 1 0.8016 -6.1109 0.0251
42 1 3.8122 -6.1478 -0.7580
43 1 2.3911 -6.5328 -1.7582
44 1 3.5313 -5.2698 -2.2807
45 1 3.5320 -3.0841 -1.2267
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815195235.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:49:16
Heat of formation + Delta-G solvation = -33.198922 kcal
Electronic energy + Delta-G solvation = -28507.981727 eV
Core-core repulsion = 24299.173718 eV
Total energy + Delta-G solvation = -4208.808009 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-43.80112 -41.36146 -40.46234 -38.75743 -37.52292 -36.31857 -34.95921 -33.86762
-33.48448 -31.86292 -30.97425 -29.38009 -28.90716 -27.98737 -25.54234 -25.26041
-24.54675 -23.47418 -23.00491 -22.03137 -21.46604 -19.58658 -18.71555 -18.17737
-18.08055 -17.70291 -17.54047 -17.22857 -16.93880 -16.41271 -16.26301 -16.10530
-15.63800 -15.30538 -15.04103 -14.84186 -14.46705 -14.45050 -14.25298 -14.09772
-14.00721 -13.69321 -13.37951 -13.33954 -13.15770 -13.10637 -12.94601 -12.71554
-12.62200 -12.55534 -12.45783 -12.25447 -12.04527 -11.87603 -11.76212 -11.69239
-11.30809 -10.90468 -10.58911 -10.27690 -9.95693 -9.68621 -8.33472 -6.45511
-0.66745 0.11101 0.19955 0.46640 0.69546 1.37533 1.42951 1.48597
1.51180 1.73237 2.33268 2.52555 2.88427 2.99833 3.06959 3.20685
3.35500 3.45967 3.73106 3.86295 3.91632 4.02338 4.11824 4.13971
4.19583 4.26819 4.41344 4.43250 4.46954 4.50457 4.57187 4.66937
4.74140 4.79493 4.82558 4.84050 4.93313 5.15883 5.17116 5.18783
5.23546 5.26802 5.39476 5.51291 5.52510 5.85381 5.93994 6.38983
6.49896 6.69974 6.78500 7.25549 8.78515
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.013370 B = 0.002047 C = 0.001819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2093.777605 B =13675.371660 C =15385.848888
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C 0.152 3.848
3 C -0.114 4.114
4 C 0.559 3.441
5 O -0.506 6.506
6 O -0.349 6.349
7 C 0.078 3.922
8 C 0.051 3.949
9 O -0.411 6.411
10 C 0.208 3.792
11 C -0.552 4.552
12 H 0.057 0.943
13 C 0.007 3.993
14 N -0.927 5.927
15 Si 0.982 3.018
16 H -0.264 1.264
17 H -0.271 1.271
18 H -0.270 1.270
19 N -0.205 5.205
20 N -0.082 5.082
21 N -0.305 5.305
22 C 0.096 3.904
23 C -0.122 4.122
24 C -0.088 4.088
25 C -0.101 4.101
26 C -0.072 4.072
27 C -0.118 4.118
28 C -0.118 4.118
29 H 0.126 0.874
30 H 0.105 0.895
31 H 0.110 0.890
32 H 0.081 0.919
33 H 0.119 0.881
34 H 0.090 0.910
35 H 0.052 0.948
36 H -0.003 1.003
37 H -0.014 1.014
38 H 0.272 0.728
39 H 0.153 0.847
40 H 0.174 0.826
41 H 0.164 0.836
42 H 0.082 0.918
43 H 0.092 0.908
44 H 0.064 0.936
45 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.336 -30.634 7.852 38.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.016 3.984
3 C -0.251 4.251
4 C 0.402 3.598
5 O -0.395 6.395
6 O -0.264 6.264
7 C 0.005 3.995
8 C -0.025 4.025
9 O -0.331 6.331
10 C 0.133 3.867
11 C -0.589 4.589
12 H 0.075 0.925
13 C -0.192 4.192
14 N -0.566 5.566
15 Si 0.805 3.195
16 H -0.189 1.189
17 H -0.195 1.195
18 H -0.195 1.195
19 N -0.079 5.079
20 N -0.060 5.060
21 N -0.083 5.083
22 C 0.006 3.994
23 C -0.142 4.142
24 C -0.106 4.106
25 C -0.119 4.119
26 C -0.073 4.073
27 C -0.174 4.174
28 C -0.138 4.138
29 H 0.144 0.856
30 H 0.124 0.876
31 H 0.128 0.872
32 H 0.099 0.901
33 H 0.137 0.863
34 H 0.107 0.893
35 H 0.070 0.930
36 H 0.014 0.986
37 H 0.004 0.996
38 H 0.081 0.919
39 H 0.171 0.829
40 H 0.191 0.809
41 H 0.182 0.818
42 H 0.100 0.900
43 H 0.111 0.889
44 H 0.083 0.917
45 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -20.066 -30.837 7.729 37.594
hybrid contribution 0.337 1.105 -0.426 1.231
sum -19.729 -29.733 7.302 36.423
Atomic orbital electron populations
1.21148 0.80889 1.06849 1.06806 1.22480 0.97765 0.84345 0.93857
1.20219 0.89600 0.93029 1.22285 1.19363 0.83687 0.84311 0.72430
1.90784 1.16684 1.84394 1.47657 1.86734 1.39623 1.17131 1.82943
1.23374 0.95755 0.75752 1.04609 1.22692 0.93480 0.98195 0.88172
1.87872 1.44342 1.63122 1.37785 1.19865 0.82867 0.87768 0.96156
1.21344 1.12750 1.21844 1.02991 0.92493 1.25949 0.96999 0.94130
1.02114 1.70050 1.24703 1.23875 1.38021 0.85253 0.77851 0.78446
0.77971 1.18857 1.19533 1.19479 1.74830 1.20067 1.04242 1.08749
1.82127 0.96937 1.02843 1.24125 1.47774 1.06014 1.06147 1.48402
1.17951 0.99194 0.78219 1.04007 1.21433 0.94873 0.99194 0.98736
1.21490 1.00693 0.90441 0.97961 1.21705 0.93300 1.01845 0.95065
1.20128 0.96544 0.92807 0.97824 1.20907 0.99956 0.97037 0.99546
1.20996 1.00112 0.93176 0.99504 0.85642 0.87606 0.87178 0.90094
0.86287 0.89253 0.93007 0.98572 0.99581 0.91946 0.82898 0.80874
0.81809 0.89986 0.88881 0.91735 0.86277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.32 8.05 71.24 0.57 -0.74 16
2 C 0.15 3.61 6.85 41.70 0.29 3.90 16
3 C -0.11 -3.70 7.02 40.78 0.29 -3.41 16
4 C 0.56 18.80 7.96 70.22 0.56 19.36 16
5 O -0.51 -15.65 14.52 19.76 0.29 -15.36 16
6 O -0.35 -13.42 10.20 -54.04 -0.55 -13.97 16
7 C 0.08 2.55 5.86 71.98 0.42 2.98 16
8 C 0.05 1.99 6.33 71.98 0.46 2.44 16
9 O -0.41 -21.60 10.30 -145.56 -1.50 -23.10 16
10 C 0.21 12.29 5.69 71.24 0.41 12.70 16
11 C -0.55 -34.70 9.43 25.60 0.24 -34.46 16
12 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16
13 C 0.01 0.41 5.46 84.65 0.46 0.87 16
14 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16
15 Si 0.98 46.46 29.54 68.60 2.03 48.49 16
16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16
17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16
18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
19 N -0.21 -7.68 12.39 -50.02 -0.62 -8.30 16
20 N -0.08 -2.70 13.57 37.02 0.50 -2.20 16
21 N -0.30 -7.54 3.75 -175.14 -0.66 -8.20 16
22 C 0.10 1.72 6.32 38.08 0.24 1.96 16
23 C -0.12 -1.24 8.36 22.38 0.19 -1.05 16
24 C -0.09 -0.44 10.04 22.25 0.22 -0.22 16
25 C -0.10 -0.57 9.70 22.29 0.22 -0.35 16
26 C -0.07 -0.76 5.88 -19.88 -0.12 -0.88 16
27 C -0.12 -0.80 10.01 71.24 0.71 -0.08 16
28 C -0.12 -2.00 9.44 22.38 0.21 -1.79 16
29 H 0.13 1.01 7.80 -2.39 -0.02 0.99 16
30 H 0.11 1.70 6.45 -2.39 -0.02 1.69 16
31 H 0.11 0.89 6.98 -2.38 -0.02 0.87 16
32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16
33 H 0.12 2.95 8.14 -2.39 -0.02 2.94 16
34 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16
35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16
37 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16
38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16
39 H 0.15 0.96 6.20 -2.91 -0.02 0.95 16
40 H 0.17 -0.32 8.06 -2.91 -0.02 -0.34 16
41 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16
42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16
43 H 0.09 0.25 8.08 -2.39 -0.02 0.23 16
44 H 0.06 0.54 8.09 -2.38 -0.02 0.52 16
45 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16
Total: -1.00 -83.71 392.12 6.15 -77.56
By element:
Atomic # 1 Polarization: -0.05 SS G_CDS: 1.01 Total: 0.97 kcal
Atomic # 6 Polarization: -4.16 SS G_CDS: 5.37 Total: 1.21 kcal
Atomic # 7 Polarization: -75.30 SS G_CDS: -0.49 Total: -75.79 kcal
Atomic # 8 Polarization: -50.67 SS G_CDS: -1.76 Total: -52.43 kcal
Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal
Total: -83.71 6.15 -77.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815195235.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.357 kcal
(2) G-P(sol) polarization free energy of solvation -83.710 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds