Wall clock time and date at job start Wed Apr 1 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38664 * 120.11545 * 2 1 4 4 N 1.39712 * 120.00190 * 0.25412 * 3 2 1 5 5 C 1.46500 * 120.00228 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47282 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99918 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99828 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99910 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46874 * 90.00179 * 9 8 6 11 11 H 1.08004 * 119.99972 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99611 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00094 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47231 * 60.00123 * 14 12 10 16 16 H 1.48494 * 109.47200 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47113 * 300.00225 * 14 12 10 18 18 C 1.46506 * 120.00381 * 0.02562 * 8 6 5 19 19 C 1.52993 * 109.47396 * 89.99676 * 18 8 6 20 20 C 1.47200 * 109.47164 * 180.02562 * 19 18 8 21 21 N 8.50109 * 123.65806 * 348.21471 * 2 1 3 22 22 C 1.38989 * 119.99682 * 180.27690 * 3 2 1 23 23 C 1.38248 * 120.23187 * 0.02562 * 22 3 2 24 24 C 1.37970 * 120.23320 * 0.02562 * 23 22 3 25 25 C 1.39502 * 120.11496 * 180.27654 * 2 1 3 26 26 C 1.47747 * 120.11396 * 359.74746 * 25 2 1 27 27 O 1.21469 * 120.00209 * 353.82802 * 26 25 2 28 28 O 1.34713 * 119.99631 * 173.82600 * 26 25 2 29 29 H 1.09001 * 109.46894 * 263.07142 * 1 2 3 30 30 H 1.09005 * 109.47294 * 23.06767 * 1 2 3 31 31 H 1.08998 * 109.47479 * 143.07302 * 1 2 3 32 32 H 0.97006 * 120.00161 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47150 * 300.00113 * 5 4 3 34 34 H 1.09000 * 109.47245 * 59.99984 * 5 4 3 35 35 H 1.09005 * 109.47359 * 209.99812 * 9 8 6 36 36 H 1.08996 * 109.47247 * 330.00481 * 9 8 6 37 37 H 0.97000 * 119.99457 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47209 * 210.00279 * 18 8 6 39 39 H 1.09000 * 109.46609 * 329.99929 * 18 8 6 40 40 H 1.09001 * 109.47433 * 300.00465 * 19 18 8 41 41 H 1.09007 * 109.47178 * 59.99835 * 19 18 8 42 42 H 1.08003 * 119.88133 * 179.97438 * 22 3 2 43 43 H 1.07995 * 119.88567 * 179.97438 * 23 22 3 44 44 H 1.08002 * 120.00464 * 179.97438 * 24 23 22 45 45 H 0.96702 * 116.99868 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5067 2.4108 0.0054 5 6 2.2417 3.6781 0.0048 6 6 1.2648 4.8255 0.0119 7 8 0.0720 4.6063 0.0173 8 7 1.7166 6.0952 0.0131 9 6 0.7669 7.2107 0.0194 10 6 0.4468 7.5898 1.4424 11 1 0.9053 7.0537 2.2603 12 6 -0.4306 8.6217 1.7003 13 7 -0.9885 9.2748 0.7043 14 14 -0.8268 9.0921 3.4641 15 1 0.4203 9.4993 4.1599 16 1 -1.7896 10.2227 3.4705 17 1 -1.4266 7.9278 4.1641 18 6 3.1575 6.3601 0.0071 19 6 3.6524 6.4560 -1.4374 20 6 5.1003 6.7215 -1.4434 21 7 6.2186 6.9268 -1.4452 22 6 3.5926 1.1966 -0.0058 23 6 4.2862 0.0007 -0.0122 24 6 3.6036 -1.1983 -0.0133 25 6 2.2070 -1.2067 -0.0058 26 6 1.4734 -2.4892 -0.0064 27 8 0.2644 -2.4974 0.1113 28 8 2.1453 -3.6494 -0.1375 29 1 -0.3633 -0.1240 1.0202 30 1 -0.3634 0.9455 -0.4027 31 1 -0.3634 -0.8215 -0.6174 32 1 0.5366 2.4128 0.0087 33 1 2.8723 3.7328 0.8922 34 1 2.8647 3.7364 -0.8877 35 1 1.2070 8.0656 -0.4941 36 1 -0.1482 6.9116 -0.4915 37 1 -1.6054 10.0010 0.8857 38 1 3.3565 7.2997 0.5225 39 1 3.6781 5.5490 0.5163 40 1 3.4535 5.5164 -1.9529 41 1 3.1318 7.2670 -1.9468 42 1 4.1326 2.1319 -0.0062 43 1 5.3662 0.0050 -0.0171 44 1 4.1492 -2.1304 -0.0186 45 1 1.6222 -4.4627 -0.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832856785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:26 Heat of formation + Delta-G solvation = -65.182236 kcal Electronic energy + Delta-G solvation = -29201.260319 eV Core-core repulsion = 24991.065409 eV Total energy + Delta-G solvation = -4210.194910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81066 -39.79867 -38.98594 -36.98673 -36.38754 -35.67292 -35.14945 -33.02112 -32.74252 -30.99086 -30.54781 -28.25599 -27.16392 -26.20650 -24.38660 -24.12802 -22.80032 -21.49930 -20.99908 -18.92775 -18.42968 -17.81088 -17.61865 -16.74004 -16.60970 -16.43555 -15.97618 -15.80476 -15.34958 -15.22436 -15.14699 -14.79184 -14.33609 -14.08758 -13.84633 -13.72016 -13.58625 -13.27238 -13.17385 -12.83657 -12.54716 -12.52085 -12.41061 -12.23317 -12.04253 -11.92006 -11.81709 -11.72198 -11.37536 -11.28533 -11.09996 -10.99052 -10.69718 -10.32107 -10.30063 -10.27700 -9.84045 -9.31442 -9.06716 -8.54932 -8.04626 -7.51214 -6.17138 -4.22419 0.55950 1.35647 2.41037 2.62490 2.72444 2.73163 3.02018 3.18641 3.25290 3.30621 3.33871 3.62590 3.66127 4.06862 4.34630 4.63600 4.69765 4.75109 4.84448 4.88864 4.98794 4.99204 5.14755 5.18347 5.22277 5.24146 5.41667 5.46179 5.57397 5.64084 5.70169 5.73146 5.94509 6.00850 6.08902 6.23255 6.28282 6.36144 6.56667 6.74716 7.12759 7.19483 7.28719 7.49579 7.65325 7.69101 7.77852 8.04394 8.07091 8.60906 8.82564 9.43524 10.91003 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.002666 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.125625 B =10501.916906 C =12504.009396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C 0.213 3.787 4 N -0.728 5.728 5 C 0.099 3.901 6 C 0.503 3.497 7 O -0.527 6.527 8 N -0.591 5.591 9 C 0.245 3.755 10 C -0.532 4.532 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.114 3.886 19 C -0.051 4.051 20 C 0.215 3.785 21 N -0.442 5.442 22 C -0.164 4.164 23 C -0.090 4.090 24 C -0.123 4.123 25 C -0.089 4.089 26 C 0.525 3.475 27 O -0.507 6.507 28 O -0.514 6.514 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.415 0.585 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 -18.918 -4.094 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C 0.108 3.892 4 N -0.362 5.362 5 C -0.029 4.029 6 C 0.288 3.712 7 O -0.404 6.404 8 N -0.322 5.322 9 C 0.126 3.874 10 C -0.571 4.571 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.012 4.012 19 C -0.092 4.092 20 C -0.103 4.103 21 N -0.119 5.119 22 C -0.188 4.188 23 C -0.109 4.109 24 C -0.144 4.144 25 C -0.091 4.091 26 C 0.370 3.630 27 O -0.396 6.396 28 O -0.325 6.325 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 11.083 -17.973 -4.108 21.511 hybrid contribution -1.239 -0.122 1.000 1.597 sum 9.844 -18.095 -3.108 20.832 Atomic orbital electron populations 1.20950 0.89933 1.02958 1.03508 1.19417 0.96605 0.89988 1.03519 1.17418 0.91178 0.85407 0.95148 1.44592 1.09567 1.01005 1.81033 1.21266 0.94864 0.83887 1.02927 1.20166 0.89227 0.84032 0.77747 1.90699 1.16492 1.83747 1.49442 1.48178 1.06163 1.06829 1.71028 1.19408 0.88022 0.82064 0.97856 1.21343 1.26979 1.16695 0.92100 0.92382 1.24913 0.95458 0.96024 0.97485 1.69904 1.29874 1.22350 1.30964 0.86563 0.78256 0.78086 0.84571 1.20197 1.21148 1.20142 1.21377 0.82287 1.04286 0.93282 1.19887 0.82405 1.05601 1.01325 1.29092 0.94947 0.93014 0.93224 1.81268 1.12915 1.09255 1.08487 1.20918 0.91908 0.99181 1.06749 1.20831 0.99862 0.91459 0.98715 1.21102 0.92325 0.98779 1.02191 1.18527 0.93417 0.88908 1.08229 1.20993 0.85357 0.84316 0.72318 1.90863 1.15361 1.87612 1.45812 1.84571 1.45465 1.17154 1.85348 0.90720 0.92105 0.89147 0.74424 0.89420 0.89635 0.94440 0.93439 0.92505 0.88343 0.90514 0.87554 0.86327 0.85391 0.85356 0.85064 0.72993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.43 36.01 0.30 -1.14 16 2 C -0.09 -1.10 5.93 -103.99 -0.62 -1.71 16 3 C 0.21 2.49 6.63 -83.83 -0.56 1.94 16 4 N -0.73 -9.22 5.61 -59.84 -0.34 -9.55 16 5 C 0.10 1.15 3.94 -5.19 -0.02 1.13 16 6 C 0.50 8.34 7.74 -10.99 -0.09 8.26 16 7 O -0.53 -11.20 15.25 5.56 0.08 -11.11 16 8 N -0.59 -9.77 2.46 -175.06 -0.43 -10.20 16 9 C 0.24 5.46 5.16 -5.19 -0.03 5.44 16 10 C -0.53 -13.63 9.39 -34.44 -0.32 -13.96 16 11 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.11 1.32 5.17 -4.04 -0.02 1.30 16 19 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 20 C 0.22 2.32 15.44 -20.73 -0.32 2.00 16 21 N -0.44 -6.01 18.54 42.19 0.78 -5.23 16 22 C -0.16 -1.60 9.31 -39.30 -0.37 -1.96 16 23 C -0.09 -0.78 10.02 -39.68 -0.40 -1.18 16 24 C -0.12 -1.15 9.61 -39.15 -0.38 -1.53 16 25 C -0.09 -0.99 5.87 -105.01 -0.62 -1.61 16 26 C 0.52 5.64 8.20 34.62 0.28 5.93 16 27 O -0.51 -6.59 14.14 -19.24 -0.27 -6.86 16 28 O -0.51 -3.83 12.69 -40.53 -0.51 -4.35 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.74 6.22 -51.93 -0.32 0.41 16 31 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 32 H 0.41 5.91 5.29 -40.82 -0.22 5.69 16 33 H 0.09 0.89 7.20 -51.93 -0.37 0.52 16 34 H 0.09 0.75 6.99 -51.93 -0.36 0.39 16 35 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 40 H 0.11 0.73 7.22 -51.93 -0.38 0.36 16 41 H 0.12 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.13 1.01 6.71 -52.48 -0.35 0.66 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.13 1.01 7.62 -52.49 -0.40 0.61 16 45 H 0.41 1.22 9.11 45.56 0.42 1.64 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -33.89 387.87 -7.20 -41.09 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.66 Total: 4.83 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -3.41 Total: 3.88 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.75 Total: -49.03 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.70 Total: -22.32 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.89 -7.20 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832856785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.092 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds