Wall clock time and date at job start Wed Apr 1 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38664 * 120.11545 * 2 1 4 4 N 1.39712 * 120.00190 * 0.25412 * 3 2 1 5 5 C 1.46500 * 120.00228 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47282 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99918 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99828 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99910 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46874 * 90.00179 * 9 8 6 11 11 H 1.08004 * 119.99972 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99611 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00094 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47231 * 60.00123 * 14 12 10 16 16 H 1.48494 * 109.47200 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47113 * 300.00225 * 14 12 10 18 18 C 1.46506 * 120.00381 * 0.02562 * 8 6 5 19 19 C 1.52993 * 109.47396 * 89.99676 * 18 8 6 20 20 C 1.47200 * 109.47164 * 180.02562 * 19 18 8 21 21 N 8.50109 * 123.65806 * 348.21471 * 2 1 3 22 22 C 1.38989 * 119.99682 * 180.27690 * 3 2 1 23 23 C 1.38248 * 120.23187 * 0.02562 * 22 3 2 24 24 C 1.37970 * 120.23320 * 0.02562 * 23 22 3 25 25 C 1.39502 * 120.11496 * 180.27654 * 2 1 3 26 26 C 1.47747 * 120.11396 * 359.74746 * 25 2 1 27 27 O 1.21469 * 120.00209 * 353.82802 * 26 25 2 28 28 O 1.34713 * 119.99631 * 173.82600 * 26 25 2 29 29 H 1.09001 * 109.46894 * 263.07142 * 1 2 3 30 30 H 1.09005 * 109.47294 * 23.06767 * 1 2 3 31 31 H 1.08998 * 109.47479 * 143.07302 * 1 2 3 32 32 H 0.97006 * 120.00161 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47150 * 300.00113 * 5 4 3 34 34 H 1.09000 * 109.47245 * 59.99984 * 5 4 3 35 35 H 1.09005 * 109.47359 * 209.99812 * 9 8 6 36 36 H 1.08996 * 109.47247 * 330.00481 * 9 8 6 37 37 H 0.97000 * 119.99457 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47209 * 210.00279 * 18 8 6 39 39 H 1.09000 * 109.46609 * 329.99929 * 18 8 6 40 40 H 1.09001 * 109.47433 * 300.00465 * 19 18 8 41 41 H 1.09007 * 109.47178 * 59.99835 * 19 18 8 42 42 H 1.08003 * 119.88133 * 179.97438 * 22 3 2 43 43 H 1.07995 * 119.88567 * 179.97438 * 23 22 3 44 44 H 1.08002 * 120.00464 * 179.97438 * 24 23 22 45 45 H 0.96702 * 116.99868 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5067 2.4108 0.0054 5 6 2.2417 3.6781 0.0048 6 6 1.2648 4.8255 0.0119 7 8 0.0720 4.6063 0.0173 8 7 1.7166 6.0952 0.0131 9 6 0.7669 7.2107 0.0194 10 6 0.4468 7.5898 1.4424 11 1 0.9053 7.0537 2.2603 12 6 -0.4306 8.6217 1.7003 13 7 -0.9885 9.2748 0.7043 14 14 -0.8268 9.0921 3.4641 15 1 0.4203 9.4993 4.1599 16 1 -1.7896 10.2227 3.4705 17 1 -1.4266 7.9278 4.1641 18 6 3.1575 6.3601 0.0071 19 6 3.6524 6.4560 -1.4374 20 6 5.1003 6.7215 -1.4434 21 7 6.2186 6.9268 -1.4452 22 6 3.5926 1.1966 -0.0058 23 6 4.2862 0.0007 -0.0122 24 6 3.6036 -1.1983 -0.0133 25 6 2.2070 -1.2067 -0.0058 26 6 1.4734 -2.4892 -0.0064 27 8 0.2644 -2.4974 0.1113 28 8 2.1453 -3.6494 -0.1375 29 1 -0.3633 -0.1240 1.0202 30 1 -0.3634 0.9455 -0.4027 31 1 -0.3634 -0.8215 -0.6174 32 1 0.5366 2.4128 0.0087 33 1 2.8723 3.7328 0.8922 34 1 2.8647 3.7364 -0.8877 35 1 1.2070 8.0656 -0.4941 36 1 -0.1482 6.9116 -0.4915 37 1 -1.6054 10.0010 0.8857 38 1 3.3565 7.2997 0.5225 39 1 3.6781 5.5490 0.5163 40 1 3.4535 5.5164 -1.9529 41 1 3.1318 7.2670 -1.9468 42 1 4.1326 2.1319 -0.0062 43 1 5.3662 0.0050 -0.0171 44 1 4.1492 -2.1304 -0.0186 45 1 1.6222 -4.4627 -0.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832856785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:25 Heat of formation + Delta-G solvation = -87.713834 kcal Electronic energy + Delta-G solvation = -29202.237362 eV Core-core repulsion = 24991.065409 eV Total energy + Delta-G solvation = -4211.171953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.61017 -40.95823 -39.87848 -37.99161 -37.12355 -36.81662 -36.17264 -34.85151 -33.59081 -32.17819 -31.44054 -29.62740 -28.19225 -27.33119 -25.32350 -25.25724 -24.28273 -22.27558 -21.83961 -20.08245 -19.30477 -18.81117 -18.48383 -18.32658 -17.69734 -17.61551 -16.84647 -16.68061 -16.50203 -16.40507 -16.04713 -15.90416 -15.63020 -15.07266 -14.76357 -14.66804 -14.46993 -14.39562 -14.12841 -13.98953 -13.78397 -13.56185 -13.50664 -13.40560 -13.19660 -12.98689 -12.87449 -12.71025 -12.62080 -12.50733 -12.47656 -12.17333 -12.06485 -11.86726 -11.69693 -11.15734 -11.10636 -10.70312 -10.58421 -9.82369 -9.52906 -8.34544 -8.18600 -6.30356 -0.21624 0.61007 1.40262 1.43080 1.49255 1.62947 1.66008 1.80383 1.88721 1.98465 2.20625 2.42085 2.64632 2.90127 3.10933 3.15752 3.66319 3.89487 3.97888 4.04618 4.13500 4.13678 4.25474 4.34115 4.40404 4.50851 4.64360 4.66819 4.73719 4.79365 4.86397 4.89346 5.07560 5.10423 5.19505 5.30797 5.33825 5.48412 5.56751 5.58570 5.67302 5.81574 5.87024 6.11789 6.30054 6.61793 6.66169 6.74118 6.80687 7.02644 7.29549 7.44307 8.87898 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.002666 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.125625 B =10501.916906 C =12504.009396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.115 4.115 3 C 0.199 3.801 4 N -0.742 5.742 5 C 0.111 3.889 6 C 0.497 3.503 7 O -0.584 6.584 8 N -0.591 5.591 9 C 0.259 3.741 10 C -0.540 4.540 11 H 0.055 0.945 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.955 3.045 15 H -0.262 1.262 16 H -0.284 1.284 17 H -0.281 1.281 18 C 0.109 3.891 19 C -0.039 4.039 20 C 0.246 3.754 21 N -0.489 5.489 22 C -0.160 4.160 23 C -0.084 4.084 24 C -0.118 4.118 25 C -0.106 4.106 26 C 0.527 3.473 27 O -0.539 6.539 28 O -0.503 6.503 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.038 0.962 36 H 0.005 0.995 37 H 0.265 0.735 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 -20.162 -3.800 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C 0.096 3.904 4 N -0.375 5.375 5 C -0.016 4.016 6 C 0.285 3.715 7 O -0.464 6.464 8 N -0.321 5.321 9 C 0.138 3.862 10 C -0.578 4.578 11 H 0.073 0.927 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.780 3.220 15 H -0.187 1.187 16 H -0.209 1.209 17 H -0.207 1.207 18 C -0.015 4.015 19 C -0.080 4.080 20 C -0.071 4.071 21 N -0.167 5.167 22 C -0.182 4.182 23 C -0.102 4.102 24 C -0.138 4.138 25 C -0.107 4.107 26 C 0.373 3.627 27 O -0.432 6.432 28 O -0.317 6.317 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.241 0.759 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.172 0.828 43 H 0.180 0.820 44 H 0.168 0.832 45 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 14.485 -19.255 -3.814 24.395 hybrid contribution -2.224 0.160 0.889 2.401 sum 12.260 -19.095 -2.926 22.880 Atomic orbital electron populations 1.20798 0.91162 1.02116 1.02472 1.19473 0.96119 0.91075 1.05376 1.17570 0.92107 0.84604 0.96132 1.44649 1.09136 1.01700 1.82022 1.21349 0.93353 0.81114 1.05831 1.21069 0.89400 0.84919 0.76084 1.90679 1.19372 1.84611 1.51786 1.48006 1.07523 1.05668 1.70885 1.18835 0.87940 0.83765 0.95629 1.21720 1.26427 1.16124 0.93576 0.92705 1.25695 0.95662 0.96393 1.00983 1.70011 1.30745 1.23025 1.32734 0.85657 0.78449 0.77452 0.80394 1.18698 1.20947 1.20662 1.21627 0.79324 1.05253 0.95339 1.19839 0.80987 1.07393 0.99779 1.29144 0.94726 0.91502 0.91772 1.81317 1.14421 1.10960 1.09960 1.21269 0.90867 1.00831 1.05266 1.21242 1.01487 0.90562 0.96940 1.21402 0.91460 1.00192 1.00718 1.18709 0.94458 0.88675 1.08896 1.21055 0.84926 0.85113 0.71585 1.90853 1.16711 1.88151 1.47474 1.84516 1.45316 1.17288 1.84542 0.91974 0.92742 0.90076 0.75863 0.86939 0.85672 0.94417 0.97731 0.92602 0.89541 0.86859 0.84326 0.86279 0.82839 0.82005 0.83195 0.70709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 8.43 71.24 0.60 -2.26 16 2 C -0.12 -2.77 5.93 -19.46 -0.12 -2.88 16 3 C 0.20 4.29 6.63 38.17 0.25 4.54 16 4 N -0.74 -17.87 5.61 -343.24 -1.92 -19.80 16 5 C 0.11 2.22 3.94 85.63 0.34 2.56 16 6 C 0.50 16.08 7.74 87.66 0.68 16.76 16 7 O -0.58 -25.65 15.25 -3.03 -0.05 -25.70 16 8 N -0.59 -18.95 2.46 -826.14 -2.03 -20.98 16 9 C 0.26 11.82 5.16 85.63 0.44 12.26 16 10 C -0.54 -28.00 9.39 25.60 0.24 -27.76 16 11 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 12 C 0.01 0.65 5.46 84.66 0.46 1.11 16 13 N -0.93 -52.58 13.29 21.45 0.28 -52.29 16 14 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 C 0.11 2.21 5.17 86.38 0.45 2.65 16 19 C -0.04 -0.56 6.03 28.79 0.17 -0.39 16 20 C 0.25 4.54 15.44 89.43 1.38 5.92 16 21 N -0.49 -12.15 18.54 20.02 0.37 -11.78 16 22 C -0.16 -2.43 9.31 22.45 0.21 -2.23 16 23 C -0.08 -1.07 10.02 22.21 0.22 -0.85 16 24 C -0.12 -1.82 9.61 22.55 0.22 -1.60 16 25 C -0.11 -2.22 5.87 -20.11 -0.12 -2.34 16 26 C 0.53 11.00 8.20 70.34 0.58 11.58 16 27 O -0.54 -14.38 14.14 19.94 0.28 -14.09 16 28 O -0.50 -6.58 12.69 -56.23 -0.71 -7.30 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.44 6.22 -2.38 -0.01 1.42 16 31 H 0.08 2.23 5.88 -2.39 -0.01 2.21 16 32 H 0.40 11.79 5.29 -92.70 -0.49 11.30 16 33 H 0.11 1.75 7.20 -2.39 -0.02 1.73 16 34 H 0.13 1.53 6.99 -2.39 -0.02 1.51 16 35 H 0.04 1.70 8.07 -2.38 -0.02 1.68 16 36 H 0.00 0.25 7.42 -2.39 -0.02 0.23 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 39 H 0.11 1.50 6.44 -2.39 -0.02 1.49 16 40 H 0.14 1.21 7.22 -2.39 -0.02 1.20 16 41 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.15 1.50 6.71 -2.91 -0.02 1.48 16 43 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.15 1.72 7.62 -2.91 -0.02 1.69 16 45 H 0.43 1.81 9.11 -74.06 -0.67 1.13 16 Total: -1.00 -78.44 387.87 4.16 -74.28 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.09 Total: 15.78 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.01 Total: 17.08 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.30 Total: -104.85 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.48 Total: -47.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -78.44 4.16 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832856785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.437 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds