Wall clock time and date at job start Wed Apr 1 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99888 * 2 1 4 4 C 1.52998 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47391 * 64.99780 * 4 3 2 6 6 C 1.36895 * 120.00069 * 279.23122 * 5 4 3 7 7 H 1.07999 * 119.99546 * 39.95482 * 6 5 4 8 8 C 1.39031 * 120.00124 * 219.95298 * 6 5 4 9 9 N 1.31377 * 119.99757 * 20.13444 * 8 6 5 10 10 Si 1.86791 * 120.00224 * 200.13304 * 8 6 5 11 11 H 1.48503 * 109.47050 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47498 * 119.99831 * 10 8 6 13 13 H 1.48503 * 109.47307 * 240.00190 * 10 8 6 14 14 C 1.34778 * 120.00057 * 99.22572 * 5 4 3 15 15 O 1.21626 * 119.99807 * 186.83584 * 14 5 4 16 16 C 1.47527 * 119.99909 * 6.84656 * 14 5 4 17 17 C 1.39789 * 120.08394 * 331.44585 * 16 14 5 18 18 C 1.37694 * 119.90929 * 179.69847 * 17 16 14 19 19 C 1.39066 * 120.08435 * 0.60291 * 18 17 16 20 20 N 1.39836 * 119.91017 * 179.69907 * 19 18 17 21 21 C 1.37742 * 126.52077 * 294.97174 * 20 19 18 22 22 C 1.50703 * 126.54667 * 359.97438 * 21 20 19 23 23 C 1.34400 * 106.90650 * 179.97438 * 21 20 19 24 24 N 1.34401 * 108.34596 * 0.02562 * 23 21 20 25 25 C 1.30994 * 109.36698 * 359.75880 * 24 23 21 26 26 O 1.35493 * 125.79080 * 180.23707 * 25 24 23 27 27 C 1.39072 * 120.17657 * 359.67256 * 19 18 17 28 28 C 1.37687 * 120.08337 * 0.02562 * 27 19 18 29 29 H 1.08996 * 109.46982 * 300.00410 * 1 2 3 30 30 H 1.09000 * 109.47227 * 60.00112 * 1 2 3 31 31 H 1.08999 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47289 * 60.00213 * 3 2 1 33 33 H 1.08996 * 109.46714 * 299.99681 * 3 2 1 34 34 H 1.08997 * 109.47255 * 304.99970 * 4 3 2 35 35 H 1.08998 * 109.47273 * 184.99839 * 4 3 2 36 36 H 0.97001 * 119.99552 * 184.92746 * 9 8 6 37 37 H 1.07995 * 120.04009 * 359.97438 * 17 16 14 38 38 H 1.07995 * 119.95396 * 180.31761 * 18 17 16 39 39 H 1.08994 * 109.47555 * 90.00121 * 22 21 20 40 40 H 1.09001 * 109.46929 * 209.99649 * 22 21 20 41 41 H 1.08998 * 109.47208 * 329.99489 * 22 21 20 42 42 H 1.08002 * 125.83057 * 179.97438 * 23 21 20 43 43 H 0.96700 * 113.99975 * 270.17776 * 26 25 24 44 44 H 1.07997 * 119.95886 * 180.02562 * 27 19 18 45 45 H 1.07998 * 120.04709 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9170 -0.7952 -1.4006 7 1 3.0702 -1.3441 -1.0158 8 6 4.9473 -1.4694 -2.0463 9 7 6.1289 -0.9070 -2.1622 10 14 4.6515 -3.1746 -2.7490 11 1 3.2468 -3.5803 -2.4890 12 1 4.8979 -3.1563 -4.2133 13 1 5.5744 -4.1428 -2.1039 14 6 4.4384 1.3324 -2.2590 15 8 4.6866 0.8335 -3.3401 16 6 4.6442 2.7781 -2.0489 17 6 3.8637 3.4689 -1.1175 18 6 4.0630 4.8170 -0.9199 19 6 5.0307 5.4936 -1.6545 20 7 5.2257 6.8639 -1.4553 21 6 4.3229 7.8683 -1.7264 22 6 2.9372 7.7002 -2.2944 23 6 4.9139 9.0269 -1.3875 24 7 6.1444 8.7536 -0.9213 25 6 6.3430 7.4592 -0.9519 26 8 7.4696 6.8207 -0.5530 27 6 5.8053 4.8110 -2.5862 28 6 5.6162 3.4618 -2.7851 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1765 0.0889 36 1 6.8266 -1.3456 -2.6740 37 1 3.1084 2.9451 -0.5505 38 1 3.4639 5.3503 -0.1967 39 1 2.2235 7.5751 -1.4802 40 1 2.6734 8.5834 -2.8762 41 1 2.9125 6.8206 -2.9376 42 1 4.4751 10.0099 -1.4756 43 1 8.1265 6.7075 -1.2535 44 1 6.5561 5.3399 -3.1545 45 1 6.2178 2.9324 -3.5091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837232813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:39 Heat of formation + Delta-G solvation = 2.934166 kcal Electronic energy + Delta-G solvation = -30659.796791 eV Core-core repulsion = 26452.555630 eV Total energy + Delta-G solvation = -4207.241161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.37169 -41.34471 -39.31747 -38.57579 -38.34510 -36.25382 -35.32655 -34.05141 -32.59608 -32.20417 -30.68298 -30.50407 -27.34286 -26.99162 -26.79151 -24.84583 -24.02308 -23.62971 -22.52554 -21.64256 -21.24554 -19.98085 -19.01129 -18.14853 -18.07875 -17.60307 -16.98346 -16.90441 -16.48310 -16.27196 -15.98577 -15.75074 -15.50812 -15.30746 -15.10367 -15.01837 -14.79855 -14.57017 -14.29742 -13.87947 -13.72216 -13.50578 -13.42261 -13.25187 -13.05536 -12.86620 -12.76673 -12.72203 -12.66135 -12.54515 -12.13997 -12.05142 -11.88784 -11.22344 -10.95616 -10.84505 -10.46678 -10.24862 -10.11637 -9.77331 -9.22774 -9.18912 -8.24324 -5.94410 -0.36788 0.17333 0.76288 1.34077 1.36846 1.43362 1.52721 1.90111 2.06760 2.32978 2.75726 2.86678 2.95849 3.10319 3.29934 3.66293 3.67060 3.74642 3.87809 4.14054 4.18720 4.23028 4.26164 4.31469 4.43308 4.46440 4.48111 4.53700 4.60939 4.61943 4.65137 4.80271 4.82588 4.90272 5.00138 5.03887 5.07495 5.11873 5.30000 5.33808 5.46804 5.59173 5.61665 5.91407 6.23770 6.41813 6.67105 6.85616 6.97585 7.16948 7.62785 8.25659 8.83239 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.003238 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.059846 B = 8644.975233 C = 9871.290491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.048 3.952 4 C 0.059 3.941 5 N -0.442 5.442 6 C -0.336 4.336 7 H 0.094 0.906 8 C 0.014 3.986 9 N -0.869 5.869 10 Si 0.966 3.034 11 H -0.258 1.258 12 H -0.294 1.294 13 H -0.276 1.276 14 C 0.490 3.510 15 O -0.593 6.593 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.096 4.096 19 C 0.112 3.888 20 N -0.417 5.417 21 C -0.004 4.004 22 C -0.078 4.078 23 C -0.026 4.026 24 N -0.507 5.507 25 C 0.364 3.636 26 O -0.450 6.450 27 C -0.101 4.101 28 C -0.071 4.071 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.259 0.741 37 H 0.177 0.823 38 H 0.160 0.840 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.206 0.794 43 H 0.417 0.583 44 H 0.146 0.854 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 17.223 3.873 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.029 4.029 4 C -0.064 4.064 5 N -0.161 5.161 6 C -0.463 4.463 7 H 0.111 0.889 8 C -0.192 4.192 9 N -0.506 5.506 10 Si 0.791 3.209 11 H -0.182 1.182 12 H -0.221 1.221 13 H -0.201 1.201 14 C 0.280 3.720 15 O -0.476 6.476 16 C -0.107 4.107 17 C -0.132 4.132 18 C -0.115 4.115 19 C 0.021 3.979 20 N -0.111 5.111 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.171 4.171 24 N -0.236 5.236 25 C 0.066 3.934 26 O -0.253 6.253 27 C -0.120 4.120 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.068 0.932 37 H 0.193 0.807 38 H 0.177 0.823 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.222 0.778 43 H 0.277 0.723 44 H 0.164 0.836 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.875 17.113 4.203 19.301 hybrid contribution 0.288 -1.748 -1.319 2.209 sum -7.587 15.365 2.884 17.377 Atomic orbital electron populations 1.22883 0.80343 1.03234 1.00635 1.88066 1.20744 1.28051 1.95414 1.23077 0.93128 0.85431 1.01282 1.22864 0.94057 1.00973 0.88463 1.43345 1.56453 1.05605 1.10690 1.19537 1.04011 0.82007 1.40767 0.88870 1.26037 0.93432 1.02028 0.97685 1.69969 1.02458 1.41781 1.36366 0.85322 0.78952 0.79156 0.77491 1.18155 1.22093 1.20132 1.18416 0.83230 0.85846 0.84520 1.90559 1.55028 1.75045 1.26966 1.20471 0.98064 0.94041 0.98098 1.22326 1.00501 0.93916 0.96495 1.21251 0.97866 0.93412 0.98922 1.17745 0.99885 0.81491 0.98800 1.43452 1.14706 1.04784 1.48119 1.21868 0.95831 0.86754 1.07123 1.20429 0.87441 1.04413 1.01265 1.22481 0.90636 0.99260 1.04748 1.70512 1.20125 1.10259 1.22680 1.20621 0.84969 0.85709 1.02087 1.84860 1.24603 1.76594 1.39268 1.20985 1.00306 0.93296 0.97423 1.21017 0.96416 0.93611 0.98008 0.92006 0.94168 0.89627 0.88827 0.93290 0.91530 0.85519 0.93164 0.80658 0.82268 0.89004 0.87213 0.92133 0.77760 0.72310 0.83624 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -13.93 8.97 -148.98 -1.34 -15.27 16 3 C 0.05 1.40 5.08 71.98 0.37 1.77 16 4 C 0.06 2.15 5.32 86.38 0.46 2.61 16 5 N -0.44 -21.87 2.55 -639.15 -1.63 -23.51 16 6 C -0.34 -18.69 8.82 84.09 0.74 -17.95 16 7 H 0.09 5.12 6.64 -2.91 -0.02 5.11 16 8 C 0.01 0.79 4.32 84.95 0.37 1.15 16 9 N -0.87 -53.01 11.70 21.68 0.25 -52.76 16 10 Si 0.97 46.42 29.60 68.60 2.03 48.45 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.49 25.06 6.60 86.69 0.57 25.63 16 15 O -0.59 -36.11 14.50 -4.11 -0.06 -36.17 16 16 C -0.10 -4.02 5.63 -20.08 -0.11 -4.13 16 17 C -0.11 -3.29 7.52 22.52 0.17 -3.12 16 18 C -0.10 -2.26 9.85 22.34 0.22 -2.04 16 19 C 0.11 2.82 5.33 38.26 0.20 3.02 16 20 N -0.42 -9.85 2.81 -448.15 -1.26 -11.11 16 21 C 0.00 -0.09 6.89 40.75 0.28 0.19 16 22 C -0.08 -0.97 10.12 71.24 0.72 -0.25 16 23 C -0.03 -0.52 11.76 83.42 0.98 0.46 16 24 N -0.51 -13.48 11.27 -313.82 -3.54 -17.02 16 25 C 0.36 9.49 8.99 179.73 1.62 11.10 16 26 O -0.45 -10.82 13.55 -87.94 -1.19 -12.01 16 27 C -0.10 -2.77 9.89 22.34 0.22 -2.55 16 28 C -0.07 -2.52 9.58 22.52 0.22 -2.31 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.41 7.42 -2.39 -0.02 1.39 16 34 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 35 H 0.13 3.98 3.82 -5.67 -0.02 3.96 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.18 4.51 2.68 -2.91 -0.01 4.50 16 38 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.91 7.95 -2.39 -0.02 0.89 16 42 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.42 6.01 9.06 -74.06 -0.67 5.34 16 44 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 45 H 0.12 4.70 7.89 -2.91 -0.02 4.67 16 Total: -1.00 -83.57 377.90 1.90 -81.67 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.36 Total: 22.26 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 8.27 Total: 15.46 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -6.18 Total: -104.39 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -2.59 Total: -63.45 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -83.57 1.90 -81.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837232813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.607 kcal (2) G-P(sol) polarization free energy of solvation -83.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds