Wall clock time and date at job start Wed Apr 1 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40133 * 120.30326 * 2 1 4 4 C 1.35205 * 120.31729 * 179.97438 * 3 2 1 5 5 N 1.36227 * 120.70486 * 0.05269 * 4 3 2 6 6 N 1.40013 * 131.99564 * 179.97438 * 5 4 3 7 7 C 1.30709 * 109.63400 * 179.70849 * 6 5 4 8 8 C 1.40635 * 108.73096 * 0.45251 * 7 6 5 9 9 C 1.46376 * 126.59200 * 179.82070 * 8 7 6 10 10 O 1.21652 * 120.00069 * 179.69074 * 9 8 7 11 11 O 1.34903 * 119.99864 * 359.68302 * 9 8 7 12 12 C 1.45206 * 116.99818 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46660 * 329.99832 * 12 11 9 14 14 C 1.52997 * 109.47147 * 90.00068 * 12 11 9 15 15 C 1.50697 * 109.47064 * 210.00468 * 12 11 9 16 16 O 1.21285 * 120.00040 * 354.99791 * 15 12 11 17 17 N 1.34778 * 119.99902 * 174.99933 * 15 12 11 18 18 C 1.46493 * 120.00087 * 359.97438 * 17 15 12 19 19 C 1.46505 * 119.99823 * 179.97438 * 17 15 12 20 20 C 1.50697 * 109.46900 * 89.99912 * 19 17 15 21 21 H 1.07995 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.37880 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31522 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46851 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46742 * 120.00249 * 24 22 20 27 27 H 1.48495 * 109.47157 * 240.00302 * 24 22 20 28 28 C 1.36556 * 120.07851 * 359.95017 * 5 4 3 29 29 C 1.36471 * 120.29602 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47037 * 269.97740 * 1 2 3 31 31 H 1.09001 * 109.46902 * 29.97104 * 1 2 3 32 32 H 1.08998 * 109.47731 * 149.97554 * 1 2 3 33 33 H 1.08003 * 119.84303 * 0.03415 * 3 2 1 34 34 H 1.07994 * 119.65016 * 180.02562 * 4 3 2 35 35 H 1.07998 * 125.63358 * 180.27129 * 7 6 5 36 36 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.46832 * 60.00119 * 14 12 11 38 38 H 1.09004 * 109.47261 * 300.00100 * 14 12 11 39 39 H 1.09002 * 109.47115 * 89.99747 * 18 17 15 40 40 H 1.08998 * 109.47192 * 209.99907 * 18 17 15 41 41 H 1.08999 * 109.47064 * 329.99847 * 18 17 15 42 42 H 1.08997 * 109.46961 * 210.00478 * 19 17 15 43 43 H 1.09005 * 109.46984 * 329.99937 * 19 17 15 44 44 H 0.97003 * 119.99529 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.37523 * 359.95878 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2099 0.0000 4 6 3.5662 1.2102 0.0005 5 7 4.2620 0.0391 0.0000 6 7 5.6351 -0.2347 -0.0001 7 6 5.8251 -1.5279 0.0055 8 6 4.5731 -2.1684 -0.0009 9 6 4.3314 -3.6120 -0.0013 10 8 3.1919 -4.0380 -0.0015 11 8 5.3723 -4.4701 -0.0017 12 6 5.0580 -5.8878 -0.0027 13 1 4.1104 -6.0501 0.5109 14 6 4.9479 -6.3847 -1.4455 15 6 6.1503 -6.6450 0.7076 16 8 7.1430 -6.0620 1.0892 17 7 6.0241 -7.9701 0.9186 18 6 4.8248 -8.6743 0.4582 19 6 7.0863 -8.7064 1.6086 20 6 6.8199 -8.7001 3.0919 21 1 5.9466 -8.1984 3.4815 22 6 7.6906 -9.3360 3.9513 23 7 8.7538 -9.9474 3.4767 24 14 7.3600 -9.3288 5.7898 25 1 6.1081 -8.5789 6.0648 26 1 7.2157 -10.7259 6.2722 27 1 8.4931 -8.6766 6.4940 28 6 3.5958 -1.1529 -0.0001 29 6 2.1955 -1.1783 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6765 2.1466 0.0006 34 1 4.1002 2.1489 0.0009 35 1 6.7850 -2.0228 0.0110 36 1 4.7124 -7.4490 -1.4463 37 1 5.8956 -6.2223 -1.9590 38 1 4.1578 -5.8370 -1.9592 39 1 4.9834 -9.0359 -0.5578 40 1 4.6238 -9.5188 1.1173 41 1 3.9749 -7.9919 0.4724 42 1 7.1090 -9.7346 1.2478 43 1 8.0465 -8.2303 1.4099 44 1 9.3666 -10.3944 4.0814 45 1 1.6665 -2.1199 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837815055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:17 Heat of formation + Delta-G solvation = -9.727862 kcal Electronic energy + Delta-G solvation = -29548.982189 eV Core-core repulsion = 25341.191961 eV Total energy + Delta-G solvation = -4207.790228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.51695 -40.26591 -38.77783 -38.01170 -36.13767 -34.86195 -34.00320 -32.83901 -31.78093 -31.52996 -29.87054 -27.79071 -27.58390 -26.11325 -24.79112 -24.08485 -23.29919 -22.36818 -22.02847 -20.37089 -18.76914 -18.42830 -17.21041 -16.92223 -16.55012 -16.47832 -16.28393 -15.84280 -15.56194 -15.46623 -15.04133 -14.93701 -14.53177 -14.10091 -13.96780 -13.70980 -13.43522 -13.25635 -13.07677 -12.80752 -12.42131 -12.33979 -12.26078 -12.11752 -12.05361 -11.86029 -11.61458 -11.35642 -11.18605 -11.16716 -10.86812 -10.73138 -10.62283 -10.51785 -10.34178 -10.14820 -9.73287 -9.60490 -8.84249 -8.43004 -8.06837 -7.68397 -6.03857 -4.08389 0.18832 0.57412 1.73442 1.82423 2.66857 2.73166 3.24219 3.31245 3.33984 3.39283 3.44405 3.79630 3.99204 4.05774 4.18296 4.37625 4.46078 4.62151 4.81966 4.89479 4.93310 4.95890 5.06513 5.08666 5.18935 5.20251 5.25320 5.30945 5.41214 5.50323 5.63413 5.74105 5.75249 5.84147 5.90348 5.96106 6.05490 6.10335 6.26731 6.39212 6.58931 7.02404 7.11097 7.42347 7.50658 7.91754 7.96372 8.22886 8.33987 8.88688 9.03905 9.56642 11.04303 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002351 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.475404 B =11904.635373 C =12218.348794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.036 4.036 3 C -0.160 4.160 4 C 0.119 3.881 5 N -0.268 5.268 6 N -0.322 5.322 7 C 0.150 3.850 8 C -0.302 4.302 9 C 0.549 3.451 10 O -0.528 6.528 11 O -0.322 6.322 12 C 0.073 3.927 13 H 0.106 0.894 14 C -0.169 4.169 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.077 3.923 19 C 0.246 3.754 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.174 3.826 29 C -0.117 4.117 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.211 0.789 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.263 0.737 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 20.549 -11.732 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.181 4.181 4 C -0.008 4.008 5 N -0.032 5.032 6 N -0.142 5.142 7 C -0.031 4.031 8 C -0.314 4.314 9 C 0.395 3.605 10 O -0.419 6.419 11 O -0.237 6.237 12 C 0.015 3.985 13 H 0.123 0.877 14 C -0.227 4.227 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.330 5.330 18 C -0.067 4.067 19 C 0.128 3.872 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 C 0.054 3.946 29 C -0.136 4.136 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.177 0.823 34 H 0.192 0.808 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.239 21.694 -11.471 29.426 hybrid contribution -0.538 -0.953 1.114 1.561 sum -16.777 20.742 -10.357 28.617 Atomic orbital electron populations 1.20870 0.89247 1.03852 1.03421 1.20105 0.97525 0.92072 0.94480 1.20870 0.91833 0.99750 1.05671 1.21614 0.92054 0.88364 0.98765 1.46121 1.06684 1.05173 1.45178 1.77688 0.87495 1.17161 1.31820 1.24396 0.99385 0.89682 0.89602 1.18622 0.92100 0.90205 1.30476 1.19552 0.82857 0.85911 0.72150 1.90790 1.23177 1.79227 1.48704 1.86662 1.36261 1.17035 1.83788 1.22577 0.99720 0.77771 0.98465 0.87682 1.22274 1.03486 1.02955 0.93940 1.19791 0.87441 0.82873 0.80576 1.90698 1.30890 1.67370 1.50541 1.48060 1.21120 1.06888 1.56956 1.21838 0.87379 0.98245 0.99278 1.19348 0.85635 0.90948 0.91290 1.21470 1.09376 1.34114 0.91585 0.92370 1.24937 0.94842 0.95209 0.99131 1.69946 1.12894 1.35356 1.35146 0.86434 0.78366 0.77567 0.85023 1.19785 1.20949 1.20843 1.19175 0.92824 0.85733 0.96906 1.20752 0.89798 1.00424 1.02674 0.89953 0.90629 0.90420 0.82297 0.80756 0.77217 0.89412 0.91032 0.91300 0.93157 0.90366 0.92304 0.94628 0.93637 0.92748 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.03 36.01 0.36 -0.11 16 2 C -0.04 -0.25 5.89 -104.55 -0.62 -0.87 16 3 C -0.16 -0.86 9.67 -39.95 -0.39 -1.24 16 4 C 0.12 0.86 11.17 -16.68 -0.19 0.67 16 5 N -0.27 -3.08 3.85 -10.54 -0.04 -3.12 16 6 N -0.32 -4.23 12.57 30.76 0.39 -3.84 16 7 C 0.15 2.02 11.79 -17.13 -0.20 1.82 16 8 C -0.30 -4.42 6.17 -104.70 -0.65 -5.07 16 9 C 0.55 9.07 7.90 34.00 0.27 9.34 16 10 O -0.53 -9.00 14.97 -19.38 -0.29 -9.29 16 11 O -0.32 -5.79 9.26 -47.72 -0.44 -6.23 16 12 C 0.07 1.27 2.17 -27.89 -0.06 1.21 16 13 H 0.11 1.76 6.15 -51.93 -0.32 1.44 16 14 C -0.17 -2.30 9.28 37.16 0.34 -1.96 16 15 C 0.51 11.16 7.10 -10.99 -0.08 11.09 16 16 O -0.52 -13.70 16.09 -14.05 -0.23 -13.93 16 17 N -0.60 -12.87 2.86 -182.96 -0.52 -13.39 16 18 C 0.08 1.21 8.92 59.84 0.53 1.75 16 19 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 20 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 21 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 24 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.17 2.21 6.76 -84.06 -0.57 1.64 16 29 C -0.12 -1.19 9.38 -39.54 -0.37 -1.57 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.17 8.10 -51.93 -0.42 -0.25 16 32 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.16 0.27 8.06 -52.48 -0.42 -0.15 16 34 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.21 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.09 1.05 5.12 -51.93 -0.27 0.78 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 40 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.06 0.80 6.08 -51.93 -0.32 0.48 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.16 1.69 7.12 -52.49 -0.37 1.32 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -37.58 385.93 -7.44 -45.02 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.78 Total: -1.58 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -2.05 Total: 9.39 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.56 Total: -46.33 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.96 Total: -29.46 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.58 -7.44 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837815055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.293 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds