Wall clock time and date at job start Wed Apr 1 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40133 * 120.30326 * 2 1 4 4 C 1.35205 * 120.31729 * 179.97438 * 3 2 1 5 5 N 1.36227 * 120.70486 * 0.05269 * 4 3 2 6 6 N 1.40013 * 131.99564 * 179.97438 * 5 4 3 7 7 C 1.30709 * 109.63400 * 179.70849 * 6 5 4 8 8 C 1.40635 * 108.73096 * 0.45251 * 7 6 5 9 9 C 1.46376 * 126.59200 * 179.82070 * 8 7 6 10 10 O 1.21652 * 120.00069 * 179.69074 * 9 8 7 11 11 O 1.34903 * 119.99864 * 359.68302 * 9 8 7 12 12 C 1.45206 * 116.99818 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46660 * 329.99832 * 12 11 9 14 14 C 1.52997 * 109.47147 * 90.00068 * 12 11 9 15 15 C 1.50697 * 109.47064 * 210.00468 * 12 11 9 16 16 O 1.21285 * 120.00040 * 354.99791 * 15 12 11 17 17 N 1.34778 * 119.99902 * 174.99933 * 15 12 11 18 18 C 1.46493 * 120.00087 * 359.97438 * 17 15 12 19 19 C 1.46505 * 119.99823 * 179.97438 * 17 15 12 20 20 C 1.50697 * 109.46900 * 89.99912 * 19 17 15 21 21 H 1.07995 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.37880 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31522 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46851 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46742 * 120.00249 * 24 22 20 27 27 H 1.48495 * 109.47157 * 240.00302 * 24 22 20 28 28 C 1.36556 * 120.07851 * 359.95017 * 5 4 3 29 29 C 1.36471 * 120.29602 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47037 * 269.97740 * 1 2 3 31 31 H 1.09001 * 109.46902 * 29.97104 * 1 2 3 32 32 H 1.08998 * 109.47731 * 149.97554 * 1 2 3 33 33 H 1.08003 * 119.84303 * 0.03415 * 3 2 1 34 34 H 1.07994 * 119.65016 * 180.02562 * 4 3 2 35 35 H 1.07998 * 125.63358 * 180.27129 * 7 6 5 36 36 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.46832 * 60.00119 * 14 12 11 38 38 H 1.09004 * 109.47261 * 300.00100 * 14 12 11 39 39 H 1.09002 * 109.47115 * 89.99747 * 18 17 15 40 40 H 1.08998 * 109.47192 * 209.99907 * 18 17 15 41 41 H 1.08999 * 109.47064 * 329.99847 * 18 17 15 42 42 H 1.08997 * 109.46961 * 210.00478 * 19 17 15 43 43 H 1.09005 * 109.46984 * 329.99937 * 19 17 15 44 44 H 0.97003 * 119.99529 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.37523 * 359.95878 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2099 0.0000 4 6 3.5662 1.2102 0.0005 5 7 4.2620 0.0391 0.0000 6 7 5.6351 -0.2347 -0.0001 7 6 5.8251 -1.5279 0.0055 8 6 4.5731 -2.1684 -0.0009 9 6 4.3314 -3.6120 -0.0013 10 8 3.1919 -4.0380 -0.0015 11 8 5.3723 -4.4701 -0.0017 12 6 5.0580 -5.8878 -0.0027 13 1 4.1104 -6.0501 0.5109 14 6 4.9479 -6.3847 -1.4455 15 6 6.1503 -6.6450 0.7076 16 8 7.1430 -6.0620 1.0892 17 7 6.0241 -7.9701 0.9186 18 6 4.8248 -8.6743 0.4582 19 6 7.0863 -8.7064 1.6086 20 6 6.8199 -8.7001 3.0919 21 1 5.9466 -8.1984 3.4815 22 6 7.6906 -9.3360 3.9513 23 7 8.7538 -9.9474 3.4767 24 14 7.3600 -9.3288 5.7898 25 1 6.1081 -8.5789 6.0648 26 1 7.2157 -10.7259 6.2722 27 1 8.4931 -8.6766 6.4940 28 6 3.5958 -1.1529 -0.0001 29 6 2.1955 -1.1783 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6765 2.1466 0.0006 34 1 4.1002 2.1489 0.0009 35 1 6.7850 -2.0228 0.0110 36 1 4.7124 -7.4490 -1.4463 37 1 5.8956 -6.2223 -1.9590 38 1 4.1578 -5.8370 -1.9592 39 1 4.9834 -9.0359 -0.5578 40 1 4.6238 -9.5188 1.1173 41 1 3.9749 -7.9919 0.4724 42 1 7.1090 -9.7346 1.2478 43 1 8.0465 -8.2303 1.4099 44 1 9.3666 -10.3944 4.0814 45 1 1.6665 -2.1199 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837815055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:16 Heat of formation + Delta-G solvation = -33.388313 kcal Electronic energy + Delta-G solvation = -29550.008183 eV Core-core repulsion = 25341.191961 eV Total energy + Delta-G solvation = -4208.816222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.34896 -41.64286 -40.36476 -38.74065 -37.47293 -36.68861 -34.91634 -34.70922 -33.01822 -32.52739 -30.64585 -29.59115 -28.37034 -27.64280 -26.11330 -25.30813 -24.44170 -23.57244 -23.03167 -21.48138 -20.39645 -19.46795 -18.71158 -18.24180 -18.01534 -17.59500 -17.38787 -17.15638 -16.84259 -16.68053 -16.39490 -16.00841 -15.74516 -15.67008 -14.81570 -14.73857 -14.47775 -14.35941 -14.29435 -14.10389 -13.66867 -13.56134 -13.50900 -13.31316 -13.06270 -13.00218 -12.82444 -12.76618 -12.61205 -12.55547 -12.51514 -12.23294 -12.08652 -11.88050 -11.69958 -11.53552 -11.52264 -10.66065 -10.60715 -10.43736 -9.51496 -8.91858 -8.24635 -6.38907 -0.54239 -0.13436 0.75456 0.94245 1.34734 1.37303 1.41328 1.49974 1.63128 1.90406 2.30736 2.32851 2.45675 3.05178 3.07965 3.34332 3.42699 3.62165 3.66011 3.73081 3.87902 3.94215 3.98177 4.20077 4.34464 4.38100 4.45756 4.57505 4.63671 4.70371 4.75177 4.81219 4.84648 4.89682 4.96050 5.07338 5.10080 5.14473 5.19981 5.28932 5.34796 5.43889 5.51472 5.65566 5.78159 6.03103 6.21702 6.56355 6.69896 6.74840 7.20586 7.35704 8.82879 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002351 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.475404 B =11904.635373 C =12218.348794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.107 3.893 5 N -0.272 5.272 6 N -0.340 5.340 7 C 0.146 3.854 8 C -0.347 4.347 9 C 0.547 3.453 10 O -0.542 6.542 11 O -0.341 6.341 12 C 0.082 3.918 13 H 0.114 0.886 14 C -0.160 4.160 15 C 0.500 3.500 16 O -0.578 6.578 17 N -0.599 5.599 18 C 0.068 3.932 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.050 0.950 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.270 1.270 26 H -0.266 1.266 27 H -0.281 1.281 28 C 0.168 3.832 29 C -0.153 4.153 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.211 0.789 34 H 0.208 0.792 35 H 0.213 0.787 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.001 0.999 44 H 0.268 0.732 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.945 22.900 -11.909 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.014 4.014 3 C -0.160 4.160 4 C -0.019 4.019 5 N -0.034 5.034 6 N -0.160 5.160 7 C -0.035 4.035 8 C -0.360 4.360 9 C 0.396 3.604 10 O -0.435 6.435 11 O -0.257 6.257 12 C 0.024 3.976 13 H 0.132 0.868 14 C -0.217 4.217 15 C 0.287 3.713 16 O -0.458 6.458 17 N -0.332 5.332 18 C -0.073 4.073 19 C 0.139 3.861 20 C -0.583 4.583 21 H 0.068 0.932 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.791 3.209 25 H -0.194 1.194 26 H -0.191 1.191 27 H -0.207 1.207 28 C 0.047 3.953 29 C -0.172 4.172 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.228 0.772 34 H 0.225 0.775 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.077 0.923 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.855 24.029 -11.678 33.287 hybrid contribution 0.393 -1.462 1.136 1.892 sum -19.462 22.568 -10.542 31.610 Atomic orbital electron populations 1.21028 0.86690 1.05305 1.04535 1.20620 0.99259 0.91388 0.90168 1.21529 0.91045 1.01024 1.02402 1.22553 0.93157 0.88195 0.98015 1.46363 1.06103 1.06075 1.44888 1.77569 0.88928 1.16688 1.32854 1.24444 0.99421 0.90052 0.89573 1.18650 0.93368 0.89579 1.34359 1.19841 0.82359 0.86413 0.71793 1.90747 1.23255 1.79477 1.49987 1.86663 1.37459 1.17342 1.84267 1.22504 0.97347 0.77571 1.00221 0.86848 1.22275 1.03957 1.04335 0.91116 1.20639 0.87820 0.82915 0.79907 1.90656 1.33497 1.68621 1.52998 1.48045 1.21767 1.07127 1.56238 1.22195 0.85820 0.98403 1.00904 1.18854 0.85492 0.90706 0.91032 1.21708 1.09382 1.34292 0.92967 0.93157 1.25835 0.94492 0.94643 1.04048 1.70050 1.13657 1.35835 1.36977 0.85378 0.78113 0.78382 0.78995 1.19443 1.19056 1.20723 1.19362 0.93636 0.85719 0.96594 1.20807 0.88873 1.01633 1.05905 0.88704 0.87663 0.90585 0.77221 0.77488 0.77086 0.87232 0.91462 0.89567 0.89637 0.90601 0.89537 0.94729 0.98076 0.92292 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.03 71.24 0.71 0.26 16 2 C -0.01 -0.09 5.89 -19.82 -0.12 -0.20 16 3 C -0.14 -0.83 9.67 22.03 0.21 -0.62 16 4 C 0.11 1.21 11.17 83.31 0.93 2.14 16 5 N -0.27 -6.06 3.85 -187.26 -0.72 -6.78 16 6 N -0.34 -9.21 12.57 -56.58 -0.71 -9.92 16 7 C 0.15 4.26 11.79 85.45 1.01 5.26 16 8 C -0.35 -10.85 6.17 -19.92 -0.12 -10.98 16 9 C 0.55 19.11 7.90 69.94 0.55 19.66 16 10 O -0.54 -19.10 14.97 19.34 0.29 -18.82 16 11 O -0.34 -12.98 9.26 -51.80 -0.48 -13.46 16 12 C 0.08 2.90 2.17 29.85 0.06 2.97 16 13 H 0.11 3.81 6.15 -2.39 -0.01 3.79 16 14 C -0.16 -4.21 9.28 71.98 0.67 -3.54 16 15 C 0.50 22.90 7.10 87.66 0.62 23.53 16 16 O -0.58 -32.61 16.09 15.70 0.25 -32.35 16 17 N -0.60 -26.51 2.86 -851.14 -2.43 -28.95 16 18 C 0.07 2.09 8.92 127.77 1.14 3.23 16 19 C 0.26 14.31 5.16 85.63 0.44 14.76 16 20 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 21 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 22 C 0.01 0.53 5.46 84.65 0.46 0.99 16 23 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 24 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 28 C 0.17 4.34 6.76 39.51 0.27 4.61 16 29 C -0.15 -3.01 9.38 22.30 0.21 -2.81 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 -0.14 8.10 -2.39 -0.02 -0.16 16 32 H 0.08 0.39 8.09 -2.39 -0.02 0.37 16 33 H 0.21 -0.81 8.06 -2.91 -0.02 -0.83 16 34 H 0.21 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.21 5.64 8.06 -2.91 -0.02 5.61 16 36 H 0.11 2.36 5.12 -2.39 -0.01 2.34 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.09 2.04 7.02 -2.39 -0.02 2.02 16 40 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 41 H 0.09 2.17 6.08 -2.39 -0.01 2.16 16 42 H 0.03 1.88 8.07 -2.39 -0.02 1.87 16 43 H 0.00 0.07 7.42 -2.38 -0.02 0.05 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.15 3.23 7.12 -2.91 -0.02 3.21 16 Total: -1.00 -88.57 385.93 6.83 -81.74 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.03 Total: 9.57 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 7.29 Total: 27.24 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.58 Total: -101.95 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: 0.06 Total: -64.63 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -88.57 6.83 -81.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837815055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.353 kcal (2) G-P(sol) polarization free energy of solvation -88.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds