Wall clock time and date at job start Wed Apr 1 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47094 * 2 1 4 4 C 1.38632 * 119.54680 * 125.00572 * 3 2 1 5 5 C 1.38587 * 119.35656 * 179.97438 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.25170 * 5 4 3 7 7 C 1.39303 * 119.05962 * 359.52355 * 6 5 4 8 8 C 1.48066 * 119.72728 * 180.23022 * 7 6 5 9 9 O 1.21435 * 120.00003 * 0.25464 * 8 7 6 10 10 O 1.34680 * 120.00448 * 180.25337 * 8 7 6 11 11 C 1.45195 * 117.00576 * 179.97438 * 10 8 7 12 12 C 1.50691 * 109.47586 * 179.97438 * 11 10 8 13 13 O 1.21290 * 119.99907 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00610 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00377 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47201 * 90.00118 * 15 14 12 17 17 H 1.07999 * 120.00072 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00076 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47056 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46951 * 120.00280 * 20 18 16 23 23 H 1.48501 * 109.47140 * 240.00068 * 20 18 16 24 24 C 1.46506 * 119.99748 * 0.02562 * 14 12 11 25 25 C 1.52993 * 109.47169 * 89.99854 * 24 14 12 26 26 C 1.47200 * 109.46991 * 180.02562 * 25 24 14 27 27 N 9.11757 * 108.02986 * 120.97826 * 6 1 2 28 28 N 1.31478 * 119.55037 * 305.02586 * 3 2 1 29 29 H 1.08995 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46831 * 299.99795 * 1 2 3 31 31 H 1.08998 * 109.47128 * 59.99429 * 1 2 3 32 32 H 1.09002 * 109.46831 * 240.00205 * 2 1 3 33 33 H 1.08996 * 109.47955 * 120.00189 * 2 1 3 34 34 H 1.07995 * 120.32139 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 36 36 H 1.08001 * 120.46741 * 179.75133 * 6 5 4 37 37 H 1.08998 * 109.46988 * 300.00728 * 11 10 8 38 38 H 1.08999 * 109.46832 * 59.99968 * 11 10 8 39 39 H 1.09004 * 109.46795 * 209.99991 * 15 14 12 40 40 H 1.08996 * 109.47040 * 329.99681 * 15 14 12 41 41 H 0.96998 * 120.00199 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46949 * 210.00250 * 24 14 12 43 43 H 1.09007 * 109.46894 * 329.99912 * 24 14 12 44 44 H 1.09001 * 109.47509 * 300.00053 * 25 24 14 45 45 H 1.08998 * 109.47400 * 60.00133 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8347 0.9879 5 6 3.3723 3.1421 0.9838 6 6 2.9275 3.9964 -0.0133 7 6 2.0464 3.5110 -0.9769 8 6 1.5659 4.4092 -2.0514 9 8 1.9436 5.5626 -2.0928 10 8 0.7100 3.9471 -2.9830 11 6 0.2806 4.8836 -4.0061 12 6 -0.6667 4.1934 -4.9532 13 8 -0.9523 3.0270 -4.7825 14 7 -1.1967 4.8720 -5.9900 15 6 -2.1181 4.2012 -6.9105 16 6 -3.5310 4.3596 -6.4111 17 1 -3.7235 4.9050 -5.4990 18 6 -4.5782 3.8081 -7.1185 19 7 -4.3439 3.1435 -8.2288 20 14 -6.3296 4.0039 -6.4991 21 1 -6.3238 4.7876 -5.2377 22 1 -7.1391 4.7162 -7.5202 23 1 -6.9183 2.6640 -6.2472 24 6 -0.8514 6.2808 -6.1966 25 6 0.3825 6.3768 -7.0959 26 6 0.7298 7.7922 -7.3030 27 7 0.9952 8.8853 -7.4627 28 7 1.6295 2.2510 -0.9366 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2372 1.1449 1.7527 35 1 4.0581 3.4886 1.7428 36 1 3.2622 5.0227 -0.0446 37 1 -0.2249 5.7277 -3.5369 38 1 1.1493 5.2417 -4.5585 39 1 -2.0308 4.6472 -7.9012 40 1 -1.8689 3.1415 -6.9658 41 1 -5.0805 2.7558 -8.7267 42 1 -1.6878 6.7940 -6.6711 43 1 -0.6373 6.7472 -5.2349 44 1 1.2189 5.8635 -6.6214 45 1 0.1685 5.9104 -8.0576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838257025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:07 Heat of formation + Delta-G solvation = -55.324800 kcal Electronic energy + Delta-G solvation = -29107.223910 eV Core-core repulsion = 24897.456451 eV Total energy + Delta-G solvation = -4209.767459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10431 -40.05999 -39.05416 -36.91665 -36.43127 -35.24337 -34.50339 -33.01213 -32.89202 -30.89362 -30.38947 -29.32033 -26.88920 -25.39095 -24.63049 -24.06737 -22.81841 -21.87642 -21.12262 -18.91839 -18.46802 -17.70884 -17.13682 -16.67336 -16.54773 -16.48379 -16.38122 -15.96265 -15.48105 -15.05259 -14.75382 -14.66806 -14.41859 -14.19084 -13.98785 -13.74868 -13.48239 -13.29365 -12.88082 -12.75293 -12.56308 -12.46442 -12.28373 -12.16632 -12.09249 -11.76727 -11.64837 -11.31646 -11.26771 -11.04233 -10.97478 -10.93035 -10.68170 -10.62970 -10.30481 -10.20754 -9.79622 -9.71847 -9.40121 -9.09997 -8.48941 -7.93208 -6.10508 -4.15115 0.20019 0.84685 2.19478 2.24753 2.72200 2.81597 3.15036 3.28213 3.36557 3.39938 3.46363 3.52922 3.80080 4.12841 4.24913 4.40405 4.51605 4.55341 4.62752 4.81788 4.88739 4.98667 5.02789 5.03952 5.10873 5.15391 5.15680 5.19612 5.25512 5.44900 5.49139 5.59664 5.65272 5.76720 5.77990 5.91484 6.02591 6.12611 6.18980 6.29231 6.85088 7.29346 7.32245 7.38801 7.57536 7.69729 7.85632 8.11995 8.15143 8.75506 8.91793 9.50549 10.97742 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.002991 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.556821 B = 9357.963043 C =11953.377351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C 0.129 3.871 4 C -0.141 4.141 5 C -0.082 4.082 6 C -0.114 4.114 7 C 0.101 3.899 8 C 0.522 3.478 9 O -0.502 6.502 10 O -0.301 6.301 11 C 0.042 3.958 12 C 0.509 3.491 13 O -0.503 6.503 14 N -0.592 5.592 15 C 0.246 3.754 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.113 3.887 25 C -0.051 4.051 26 C 0.216 3.784 27 N -0.443 5.443 28 N -0.423 5.423 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.280 -1.816 16.705 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.011 4.011 4 C -0.161 4.161 5 C -0.107 4.107 6 C -0.134 4.134 7 C -0.036 4.036 8 C 0.365 3.635 9 O -0.390 6.390 10 O -0.214 6.214 11 C -0.035 4.035 12 C 0.293 3.707 13 O -0.377 6.377 14 N -0.326 5.326 15 C 0.128 3.872 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.014 4.014 25 C -0.093 4.093 26 C -0.102 4.102 27 N -0.120 5.120 28 N -0.135 5.135 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.905 -0.851 15.682 22.352 hybrid contribution -0.481 0.266 0.883 1.040 sum 15.424 -0.586 16.564 22.641 Atomic orbital electron populations 1.21717 0.93527 1.02163 1.03233 1.20534 0.97617 0.89536 1.03340 1.21485 0.93171 0.96517 0.89963 1.22341 0.97403 0.96938 0.99425 1.21597 0.98368 0.93120 0.97650 1.22084 0.95856 1.01970 0.93469 1.19983 0.97799 0.91109 0.94730 1.20851 0.76363 0.85511 0.80768 1.90850 1.56010 1.18025 1.74089 1.86751 1.56665 1.41959 1.36061 1.23077 0.99371 0.91911 0.89152 1.19685 0.81692 0.87378 0.81897 1.90763 1.59590 1.15901 1.71449 1.48152 1.45989 1.10088 1.28393 1.19416 0.86614 0.94166 0.86985 1.21450 0.91049 1.35049 1.09344 0.92219 1.24910 0.99344 0.94821 0.94853 1.69923 1.32160 1.35416 1.15656 0.86453 0.84273 0.77989 0.78780 1.19768 1.20988 1.20836 1.21396 0.96228 0.84542 0.99203 1.19898 1.00678 0.83957 1.04753 1.29053 0.93126 0.94958 0.93027 1.81217 1.09150 1.12526 1.09133 1.67505 1.21075 1.02091 1.22833 0.92078 0.93041 0.90674 0.89462 0.90230 0.83961 0.83627 0.83152 0.88333 0.88570 0.94323 0.93320 0.92674 0.88201 0.90654 0.87651 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.77 37.16 0.36 -1.07 16 2 C -0.07 -0.59 6.33 -27.89 -0.18 -0.77 16 3 C 0.13 1.30 6.18 -82.60 -0.51 0.79 16 4 C -0.14 -1.00 9.72 -39.31 -0.38 -1.38 16 5 C -0.08 -0.56 10.17 -39.31 -0.40 -0.96 16 6 C -0.11 -1.08 9.63 -39.04 -0.38 -1.45 16 7 C 0.10 1.30 6.75 -83.03 -0.56 0.74 16 8 C 0.52 7.72 7.95 34.76 0.28 8.00 16 9 O -0.50 -7.54 16.11 -19.22 -0.31 -7.84 16 10 O -0.30 -5.06 9.57 -47.12 -0.45 -5.51 16 11 C 0.04 0.63 4.50 36.00 0.16 0.79 16 12 C 0.51 9.74 7.75 -10.99 -0.09 9.65 16 13 O -0.50 -12.17 16.08 -14.11 -0.23 -12.39 16 14 N -0.59 -10.82 2.46 -175.06 -0.43 -11.25 16 15 C 0.25 5.76 5.16 -5.20 -0.03 5.73 16 16 C -0.53 -14.06 9.39 -34.44 -0.32 -14.39 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.11 1.49 5.17 -4.04 -0.02 1.47 16 25 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 26 C 0.22 2.66 15.43 -20.75 -0.32 2.34 16 27 N -0.44 -6.64 18.54 42.16 0.78 -5.86 16 28 N -0.42 -5.70 9.63 -6.07 -0.06 -5.76 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.41 7.87 -51.93 -0.41 0.01 16 34 H 0.14 0.55 7.95 -52.49 -0.42 0.13 16 35 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.15 1.23 7.64 -52.49 -0.40 0.83 16 37 H 0.10 1.31 7.40 -51.93 -0.38 0.92 16 38 H 0.10 1.15 7.18 -51.93 -0.37 0.77 16 39 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 43 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 44 H 0.11 0.91 7.22 -51.93 -0.37 0.54 16 45 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -35.63 401.86 -7.57 -43.19 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.99 Total: -2.65 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -2.66 Total: 10.41 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 1.03 Total: -47.43 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.99 Total: -25.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.63 -7.57 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838257025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.131 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds