Wall clock time and date at job start Wed Apr 1 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47094 * 2 1 4 4 C 1.38632 * 119.54680 * 125.00572 * 3 2 1 5 5 C 1.38587 * 119.35656 * 179.97438 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.25170 * 5 4 3 7 7 C 1.39303 * 119.05962 * 359.52355 * 6 5 4 8 8 C 1.48066 * 119.72728 * 180.23022 * 7 6 5 9 9 O 1.21435 * 120.00003 * 0.25464 * 8 7 6 10 10 O 1.34680 * 120.00448 * 180.25337 * 8 7 6 11 11 C 1.45195 * 117.00576 * 179.97438 * 10 8 7 12 12 C 1.50691 * 109.47586 * 179.97438 * 11 10 8 13 13 O 1.21290 * 119.99907 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00610 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00377 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47201 * 90.00118 * 15 14 12 17 17 H 1.07999 * 120.00072 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00076 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47056 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46951 * 120.00280 * 20 18 16 23 23 H 1.48501 * 109.47140 * 240.00068 * 20 18 16 24 24 C 1.46506 * 119.99748 * 0.02562 * 14 12 11 25 25 C 1.52993 * 109.47169 * 89.99854 * 24 14 12 26 26 C 1.47200 * 109.46991 * 180.02562 * 25 24 14 27 27 N 9.11757 * 108.02986 * 120.97826 * 6 1 2 28 28 N 1.31478 * 119.55037 * 305.02586 * 3 2 1 29 29 H 1.08995 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46831 * 299.99795 * 1 2 3 31 31 H 1.08998 * 109.47128 * 59.99429 * 1 2 3 32 32 H 1.09002 * 109.46831 * 240.00205 * 2 1 3 33 33 H 1.08996 * 109.47955 * 120.00189 * 2 1 3 34 34 H 1.07995 * 120.32139 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 36 36 H 1.08001 * 120.46741 * 179.75133 * 6 5 4 37 37 H 1.08998 * 109.46988 * 300.00728 * 11 10 8 38 38 H 1.08999 * 109.46832 * 59.99968 * 11 10 8 39 39 H 1.09004 * 109.46795 * 209.99991 * 15 14 12 40 40 H 1.08996 * 109.47040 * 329.99681 * 15 14 12 41 41 H 0.96998 * 120.00199 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46949 * 210.00250 * 24 14 12 43 43 H 1.09007 * 109.46894 * 329.99912 * 24 14 12 44 44 H 1.09001 * 109.47509 * 300.00053 * 25 24 14 45 45 H 1.08998 * 109.47400 * 60.00133 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8347 0.9879 5 6 3.3723 3.1421 0.9838 6 6 2.9275 3.9964 -0.0133 7 6 2.0464 3.5110 -0.9769 8 6 1.5659 4.4092 -2.0514 9 8 1.9436 5.5626 -2.0928 10 8 0.7100 3.9471 -2.9830 11 6 0.2806 4.8836 -4.0061 12 6 -0.6667 4.1934 -4.9532 13 8 -0.9523 3.0270 -4.7825 14 7 -1.1967 4.8720 -5.9900 15 6 -2.1181 4.2012 -6.9105 16 6 -3.5310 4.3596 -6.4111 17 1 -3.7235 4.9050 -5.4990 18 6 -4.5782 3.8081 -7.1185 19 7 -4.3439 3.1435 -8.2288 20 14 -6.3296 4.0039 -6.4991 21 1 -6.3238 4.7876 -5.2377 22 1 -7.1391 4.7162 -7.5202 23 1 -6.9183 2.6640 -6.2472 24 6 -0.8514 6.2808 -6.1966 25 6 0.3825 6.3768 -7.0959 26 6 0.7298 7.7922 -7.3030 27 7 0.9952 8.8853 -7.4627 28 7 1.6295 2.2510 -0.9366 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2372 1.1449 1.7527 35 1 4.0581 3.4886 1.7428 36 1 3.2622 5.0227 -0.0446 37 1 -0.2249 5.7277 -3.5369 38 1 1.1493 5.2417 -4.5585 39 1 -2.0308 4.6472 -7.9012 40 1 -1.8689 3.1415 -6.9658 41 1 -5.0805 2.7558 -8.7267 42 1 -1.6878 6.7940 -6.6711 43 1 -0.6373 6.7472 -5.2349 44 1 1.2189 5.8635 -6.6214 45 1 0.1685 5.9104 -8.0576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838257025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:06 Heat of formation + Delta-G solvation = -76.861273 kcal Electronic energy + Delta-G solvation = -29108.157802 eV Core-core repulsion = 24897.456451 eV Total energy + Delta-G solvation = -4210.701351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.04588 -41.11398 -40.39908 -38.08041 -37.60691 -36.71740 -35.19533 -34.89188 -33.66031 -32.23732 -31.21479 -30.67193 -28.54470 -26.32886 -25.40205 -25.36323 -24.47182 -22.68354 -22.00560 -20.33892 -19.52082 -18.90209 -18.42146 -18.15621 -17.79616 -17.67500 -17.31851 -16.92954 -16.75212 -16.24554 -16.07930 -15.76394 -15.57168 -15.27881 -14.90014 -14.74518 -14.48320 -14.43955 -14.18079 -13.87120 -13.80392 -13.60673 -13.57934 -13.27696 -13.17640 -12.97461 -12.90216 -12.73294 -12.54710 -12.44728 -12.20668 -12.07836 -11.98311 -11.97025 -11.77535 -11.65865 -10.96043 -10.72842 -10.59365 -10.50371 -10.10732 -9.58683 -8.19045 -6.30760 -0.56811 0.21228 1.14935 1.25226 1.39229 1.42096 1.52246 1.57555 1.77679 1.82070 2.25646 2.43622 2.71494 2.94160 3.08372 3.13781 3.54194 3.57005 3.77287 3.89146 3.91206 3.96604 4.04867 4.07618 4.10822 4.35089 4.36567 4.46678 4.51534 4.53381 4.78869 4.84095 4.93559 5.00787 5.04078 5.05600 5.07793 5.15150 5.22048 5.31889 5.43492 5.56077 5.59861 5.82958 6.10797 6.34374 6.56176 6.61212 6.78259 6.88344 7.25098 7.41791 8.88277 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.002991 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.556821 B = 9357.963043 C =11953.377351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C 0.108 3.892 4 C -0.122 4.122 5 C -0.072 4.072 6 C -0.109 4.109 7 C 0.062 3.938 8 C 0.521 3.479 9 O -0.511 6.511 10 O -0.330 6.330 11 C 0.050 3.950 12 C 0.506 3.494 13 O -0.566 6.566 14 N -0.589 5.589 15 C 0.261 3.739 16 C -0.542 4.542 17 H 0.054 0.946 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.285 1.285 24 C 0.107 3.893 25 C -0.040 4.040 26 C 0.245 3.755 27 N -0.487 5.487 28 N -0.470 5.470 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.186 0.814 35 H 0.190 0.810 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.044 0.956 40 H 0.007 0.993 41 H 0.266 0.734 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.111 -1.173 19.433 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.033 4.033 4 C -0.141 4.141 5 C -0.097 4.097 6 C -0.129 4.129 7 C -0.073 4.073 8 C 0.365 3.635 9 O -0.400 6.400 10 O -0.244 6.244 11 C -0.027 4.027 12 C 0.293 3.707 13 O -0.445 6.445 14 N -0.321 5.321 15 C 0.140 3.860 16 C -0.581 4.581 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.783 3.217 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.211 1.211 24 C -0.017 4.017 25 C -0.081 4.081 26 C -0.072 4.072 27 N -0.165 5.165 28 N -0.182 5.182 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.203 0.797 35 H 0.207 0.793 36 H 0.178 0.822 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.151 0.849 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.758 -0.142 18.403 25.574 hybrid contribution -1.005 0.005 0.109 1.011 sum 16.753 -0.137 18.512 24.967 Atomic orbital electron populations 1.21669 0.95207 1.02345 1.01237 1.20624 0.96111 0.89184 1.04895 1.21926 0.94229 0.96759 0.90407 1.22805 0.94984 0.97729 0.98579 1.22122 0.97904 0.92457 0.97222 1.22324 0.94643 1.02903 0.93043 1.19992 1.00278 0.91284 0.95773 1.21309 0.75615 0.85924 0.80611 1.90813 1.56428 1.18305 1.74446 1.86750 1.57610 1.43119 1.36944 1.23052 0.99755 0.91186 0.88703 1.20416 0.81552 0.86730 0.82010 1.90733 1.61924 1.18775 1.73023 1.47987 1.44824 1.11909 1.27386 1.18905 0.86444 0.92441 0.88193 1.21772 0.92721 1.34624 1.08980 0.92819 1.25701 1.03215 0.94645 0.95105 1.70019 1.33309 1.36330 1.16723 0.85514 0.79845 0.77781 0.78553 1.19367 1.19723 1.21067 1.21646 0.97337 0.81327 1.01402 1.19841 1.00234 0.83177 1.04822 1.29094 0.91790 0.94669 0.91644 1.81259 1.10728 1.13823 1.10670 1.67371 1.22804 1.02977 1.25032 0.90773 0.92714 0.94917 0.90234 0.86219 0.79697 0.79287 0.82168 0.86277 0.85024 0.93807 0.97525 0.92500 0.88696 0.87850 0.84935 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.77 71.98 0.70 -2.19 16 2 C -0.07 -1.07 6.33 29.85 0.19 -0.88 16 3 C 0.11 2.04 6.18 42.70 0.26 2.31 16 4 C -0.12 -1.26 9.72 22.45 0.22 -1.04 16 5 C -0.07 -0.70 10.17 22.45 0.23 -0.47 16 6 C -0.11 -1.86 9.63 22.62 0.22 -1.64 16 7 C 0.06 1.61 6.75 41.87 0.28 1.89 16 8 C 0.52 15.60 7.95 70.43 0.56 16.16 16 9 O -0.51 -14.99 16.11 20.05 0.32 -14.67 16 10 O -0.33 -11.45 9.57 -49.51 -0.47 -11.92 16 11 C 0.05 1.45 4.50 71.23 0.32 1.78 16 12 C 0.51 19.84 7.75 87.65 0.68 20.52 16 13 O -0.57 -29.07 16.08 15.74 0.25 -28.81 16 14 N -0.59 -21.70 2.46 -826.16 -2.03 -23.73 16 15 C 0.26 12.62 5.16 85.63 0.44 13.06 16 16 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.92 -53.60 13.29 21.45 0.28 -53.31 16 20 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 C 0.11 2.68 5.17 86.38 0.45 3.12 16 25 C -0.04 -0.75 6.03 28.79 0.17 -0.57 16 26 C 0.25 5.56 15.43 89.44 1.38 6.94 16 27 N -0.49 -13.96 18.54 20.01 0.37 -13.59 16 28 N -0.47 -12.97 9.63 -173.12 -1.67 -14.64 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.03 0.90 7.94 -2.39 -0.02 0.89 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 0.82 7.87 -2.39 -0.02 0.80 16 34 H 0.19 0.31 7.95 -2.91 -0.02 0.29 16 35 H 0.19 0.20 8.06 -2.91 -0.02 0.17 16 36 H 0.16 2.30 7.64 -2.91 -0.02 2.28 16 37 H 0.12 2.98 7.40 -2.39 -0.02 2.97 16 38 H 0.13 2.86 7.18 -2.39 -0.02 2.84 16 39 H 0.04 2.06 8.07 -2.38 -0.02 2.04 16 40 H 0.01 0.38 7.42 -2.39 -0.02 0.36 16 41 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.09 2.52 8.07 -2.39 -0.02 2.50 16 43 H 0.10 2.04 6.44 -2.38 -0.02 2.03 16 44 H 0.13 1.88 7.22 -2.39 -0.02 1.86 16 45 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -84.16 401.86 6.92 -77.24 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.02 Total: 6.49 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: 6.81 Total: 30.90 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.04 Total: -105.27 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: 0.10 Total: -55.41 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -84.16 6.92 -77.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838257025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.384 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds