Wall clock time and date at job start Wed Apr 1 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47061 * 90.00518 * 7 6 5 9 9 N 1.40204 * 126.58956 * 90.01974 * 8 7 6 10 10 N 1.28761 * 108.38485 * 180.02562 * 9 8 7 11 11 C 1.34438 * 109.51256 * 0.02562 * 10 9 8 12 12 C 1.47394 * 125.77964 * 180.02562 * 11 10 9 13 13 O 1.21512 * 119.99993 * 179.97438 * 12 11 10 14 14 O 1.34753 * 120.00042 * 359.97438 * 12 11 10 15 15 C 1.45193 * 116.99862 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.47415 * 330.00005 * 15 14 12 17 17 C 1.53000 * 109.47160 * 90.00438 * 15 14 12 18 18 C 1.50706 * 109.47153 * 209.99708 * 15 14 12 19 19 H 1.08001 * 119.99492 * 0.02562 * 18 15 14 20 20 C 1.37871 * 120.00095 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99950 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 120.00133 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46860 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47025 * 119.99706 * 22 20 18 25 25 H 1.48491 * 109.47207 * 240.00005 * 22 20 18 26 26 C 1.34785 * 126.58314 * 269.71166 * 8 7 6 27 27 C 1.50698 * 126.57937 * 359.97438 * 26 8 7 28 28 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 29 29 C 1.38137 * 120.05792 * 359.97438 * 28 6 5 30 30 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 31 31 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 33 33 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 34 34 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 35 35 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 36 36 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 37 37 H 1.09008 * 109.46620 * 300.00020 * 17 15 14 38 38 H 1.08998 * 109.47310 * 59.99503 * 17 15 14 39 39 H 1.09002 * 109.47475 * 180.02562 * 17 15 14 40 40 H 0.97007 * 120.00064 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.47329 * 90.00232 * 27 26 8 42 42 H 1.09003 * 109.47060 * 209.99691 * 27 26 8 43 43 H 1.09000 * 109.47145 * 329.99453 * 27 26 8 44 44 H 1.08007 * 119.96697 * 180.02562 * 28 6 5 45 45 H 1.08000 * 120.03391 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 7 4.2025 5.4509 -1.3936 9 7 3.3231 6.2090 -2.1795 10 7 3.8618 6.3867 -3.3354 11 6 5.0633 5.7844 -3.3682 12 6 5.9858 5.7638 -4.5176 13 8 7.0509 5.1851 -4.4315 14 8 5.6482 6.3866 -5.6638 15 6 6.6054 6.3256 -6.7538 16 1 7.6149 6.2615 -6.3478 17 6 6.3220 5.0917 -7.6130 18 6 6.4823 7.5662 -7.6005 19 1 5.7574 8.3248 -7.3446 20 6 7.2951 7.7327 -8.7017 21 7 8.1774 6.8087 -9.0135 22 14 7.1430 9.2708 -9.7508 23 1 6.0844 10.1490 -9.1912 24 1 8.4379 9.9978 -9.7540 25 1 6.7864 8.8887 -11.1407 26 6 5.2878 5.2012 -2.1528 27 6 6.5118 4.4241 -1.7419 28 6 1.9211 3.6048 -0.0001 29 6 1.2915 2.3752 0.0042 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.0209 0.3800 -0.0014 34 1 5.1345 2.5750 -0.0108 35 1 3.3600 5.7474 0.5041 36 1 4.9459 4.9394 0.4996 37 1 6.4109 4.1943 -7.0006 38 1 5.3125 5.1558 -8.0191 39 1 7.0409 5.0456 -8.4311 40 1 8.7490 6.9256 -9.7885 41 1 6.3706 3.3702 -1.9816 42 1 7.3811 4.8052 -2.2778 43 1 6.6692 4.5348 -0.6690 44 1 1.3342 4.5115 -0.0001 45 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845468029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:14 Heat of formation + Delta-G solvation = -3.148007 kcal Electronic energy + Delta-G solvation = -29274.372295 eV Core-core repulsion = 25066.867391 eV Total energy + Delta-G solvation = -4207.504904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18060 -40.58345 -39.15282 -38.22732 -35.70251 -35.03290 -33.17109 -32.54992 -31.55119 -30.95884 -29.56231 -28.24837 -27.80548 -26.40363 -25.24995 -23.80722 -23.12783 -22.42622 -21.33060 -20.52606 -19.72332 -18.66300 -17.72657 -16.80719 -16.64162 -16.57544 -16.20216 -15.99427 -15.53296 -15.36344 -14.88229 -14.55263 -14.36482 -14.32790 -14.12743 -13.97641 -13.39798 -13.15022 -13.05977 -12.87221 -12.64532 -12.56988 -12.24059 -12.14009 -11.91098 -11.69525 -11.56228 -11.27643 -11.16352 -11.02370 -10.96531 -10.76667 -10.29192 -10.22321 -10.19361 -9.77363 -9.48239 -9.46931 -9.01292 -8.82133 -8.67882 -8.42869 -6.12165 -4.17705 0.72151 0.89520 1.19443 1.93875 2.09959 2.78787 3.29283 3.30730 3.35665 3.41287 3.60308 3.62680 4.10065 4.17295 4.28254 4.36239 4.39667 4.44802 4.62259 4.64433 4.68989 4.76146 4.91452 4.97118 5.02362 5.11580 5.16425 5.21146 5.35871 5.45287 5.55651 5.61814 5.72330 5.85663 5.86637 6.05605 6.12704 6.23357 6.41363 6.70127 6.89122 6.96570 6.97261 7.19589 7.65325 7.78158 7.95325 8.11769 8.20769 8.68818 8.96107 9.47191 10.95485 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.002146 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.892865 B =13044.997393 C =13296.770226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.140 3.860 4 C -0.154 4.154 5 C -0.057 4.057 6 C -0.161 4.161 7 C 0.169 3.831 8 N -0.362 5.362 9 N -0.073 5.073 10 N -0.175 5.175 11 C -0.078 4.078 12 C 0.544 3.456 13 O -0.517 6.517 14 O -0.335 6.335 15 C 0.214 3.786 16 H 0.049 0.951 17 C -0.155 4.155 18 C -0.516 4.516 19 H 0.071 0.929 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.911 3.089 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.124 3.876 27 C -0.098 4.098 28 C -0.046 4.046 29 C -0.211 4.211 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.016 0.984 38 H 0.037 0.963 39 H 0.100 0.900 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 -12.180 24.510 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.095 3.905 4 C -0.172 4.172 5 C -0.076 4.076 6 C -0.162 4.162 7 C 0.049 3.951 8 N -0.148 5.148 9 N -0.053 5.053 10 N -0.049 5.049 11 C -0.215 4.215 12 C 0.386 3.614 13 O -0.407 6.407 14 O -0.249 6.249 15 C 0.162 3.838 16 H 0.066 0.934 17 C -0.213 4.213 18 C -0.554 4.554 19 H 0.089 0.911 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.739 3.261 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.013 4.013 27 C -0.156 4.156 28 C -0.065 4.065 29 C -0.229 4.229 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.218 -11.836 24.303 29.665 hybrid contribution 0.525 0.260 -0.513 0.779 sum -11.693 -11.576 23.790 28.925 Atomic orbital electron populations 1.23111 0.78004 1.04235 1.01588 1.86090 1.21736 1.26825 1.88267 1.19153 0.92477 0.84280 0.94629 1.20436 0.91437 0.98745 1.06599 1.20926 1.00014 0.90917 0.95727 1.19749 0.94150 0.94104 1.08201 1.20707 1.02924 0.93988 0.77486 1.50485 1.13107 1.38215 1.12970 1.81987 1.13352 1.12972 0.96985 1.74780 1.05841 1.12898 1.11371 1.20420 0.96116 1.09887 0.95063 1.19369 0.83171 0.76239 0.82616 1.90752 1.23558 1.42974 1.83456 1.86652 1.50391 1.66423 1.21445 1.20719 0.87215 0.95828 0.80028 0.93365 1.22168 1.01975 0.95470 1.01645 1.21089 1.20707 1.03445 1.10182 0.91101 1.24879 0.94737 0.97362 0.97074 1.69912 1.21874 1.33582 1.27530 0.86216 0.78082 0.82155 0.79695 1.19410 1.20820 1.20756 1.21802 0.91272 0.97344 0.90849 1.20770 0.93109 0.99719 1.02011 1.20900 0.93619 0.97578 0.94414 1.21259 1.00362 0.92147 1.09172 0.92362 0.88000 0.92475 0.84676 0.84865 0.86851 0.87268 0.96486 0.94353 0.88167 0.92538 0.88971 0.86777 0.90726 0.85086 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.75 10.50 -19.44 -0.20 -2.95 16 3 C 0.14 1.27 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.30 9.99 -39.43 -0.39 -1.69 16 5 C -0.06 -0.44 9.69 -39.61 -0.38 -0.82 16 6 C -0.16 -1.30 5.46 -104.60 -0.57 -1.88 16 7 C 0.17 1.27 6.43 -5.19 -0.03 1.24 16 8 N -0.36 -4.54 3.61 -58.01 -0.21 -4.75 16 9 N -0.07 -1.20 13.78 60.35 0.83 -0.36 16 10 N -0.18 -3.44 12.39 32.83 0.41 -3.04 16 11 C -0.08 -1.48 7.02 -83.57 -0.59 -2.07 16 12 C 0.54 12.34 7.93 34.46 0.27 12.62 16 13 O -0.52 -11.90 13.99 -19.28 -0.27 -12.17 16 14 O -0.33 -8.69 9.87 -40.64 -0.40 -9.09 16 15 C 0.21 5.97 2.56 -27.88 -0.07 5.89 16 16 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 17 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 18 C -0.52 -15.02 8.90 -34.44 -0.31 -15.33 16 19 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 22 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.12 1.77 7.02 -81.86 -0.57 1.20 16 27 C -0.10 -1.02 9.49 36.00 0.34 -0.68 16 28 C -0.05 -0.39 9.69 -39.61 -0.38 -0.77 16 29 C -0.21 -1.72 9.04 -39.44 -0.36 -2.08 16 30 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.72 7.98 -52.49 -0.42 0.30 16 35 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.11 0.50 7.09 -51.93 -0.37 0.13 16 37 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 1.45 6.45 -51.93 -0.33 1.11 16 43 H 0.07 0.48 7.18 -51.93 -0.37 0.11 16 44 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.13 0.82 6.30 -52.49 -0.33 0.48 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -35.29 387.11 -6.28 -41.57 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.81 Total: -2.34 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.07 Total: -4.32 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 1.66 Total: -33.19 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.87 Total: -24.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.29 -6.28 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.426 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds