Wall clock time and date at job start Wed Apr 1 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47061 * 90.00518 * 7 6 5 9 9 N 1.40204 * 126.58956 * 90.01974 * 8 7 6 10 10 N 1.28761 * 108.38485 * 180.02562 * 9 8 7 11 11 C 1.34438 * 109.51256 * 0.02562 * 10 9 8 12 12 C 1.47394 * 125.77964 * 180.02562 * 11 10 9 13 13 O 1.21512 * 119.99993 * 179.97438 * 12 11 10 14 14 O 1.34753 * 120.00042 * 359.97438 * 12 11 10 15 15 C 1.45193 * 116.99862 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.47415 * 330.00005 * 15 14 12 17 17 C 1.53000 * 109.47160 * 90.00438 * 15 14 12 18 18 C 1.50706 * 109.47153 * 209.99708 * 15 14 12 19 19 H 1.08001 * 119.99492 * 0.02562 * 18 15 14 20 20 C 1.37871 * 120.00095 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99950 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 120.00133 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46860 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47025 * 119.99706 * 22 20 18 25 25 H 1.48491 * 109.47207 * 240.00005 * 22 20 18 26 26 C 1.34785 * 126.58314 * 269.71166 * 8 7 6 27 27 C 1.50698 * 126.57937 * 359.97438 * 26 8 7 28 28 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 29 29 C 1.38137 * 120.05792 * 359.97438 * 28 6 5 30 30 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 31 31 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 33 33 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 34 34 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 35 35 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 36 36 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 37 37 H 1.09008 * 109.46620 * 300.00020 * 17 15 14 38 38 H 1.08998 * 109.47310 * 59.99503 * 17 15 14 39 39 H 1.09002 * 109.47475 * 180.02562 * 17 15 14 40 40 H 0.97007 * 120.00064 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.47329 * 90.00232 * 27 26 8 42 42 H 1.09003 * 109.47060 * 209.99691 * 27 26 8 43 43 H 1.09000 * 109.47145 * 329.99453 * 27 26 8 44 44 H 1.08007 * 119.96697 * 180.02562 * 28 6 5 45 45 H 1.08000 * 120.03391 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 7 4.2025 5.4509 -1.3936 9 7 3.3231 6.2090 -2.1795 10 7 3.8618 6.3867 -3.3354 11 6 5.0633 5.7844 -3.3682 12 6 5.9858 5.7638 -4.5176 13 8 7.0509 5.1851 -4.4315 14 8 5.6482 6.3866 -5.6638 15 6 6.6054 6.3256 -6.7538 16 1 7.6149 6.2615 -6.3478 17 6 6.3220 5.0917 -7.6130 18 6 6.4823 7.5662 -7.6005 19 1 5.7574 8.3248 -7.3446 20 6 7.2951 7.7327 -8.7017 21 7 8.1774 6.8087 -9.0135 22 14 7.1430 9.2708 -9.7508 23 1 6.0844 10.1490 -9.1912 24 1 8.4379 9.9978 -9.7540 25 1 6.7864 8.8887 -11.1407 26 6 5.2878 5.2012 -2.1528 27 6 6.5118 4.4241 -1.7419 28 6 1.9211 3.6048 -0.0001 29 6 1.2915 2.3752 0.0042 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.0209 0.3800 -0.0014 34 1 5.1345 2.5750 -0.0108 35 1 3.3600 5.7474 0.5041 36 1 4.9459 4.9394 0.4996 37 1 6.4109 4.1943 -7.0006 38 1 5.3125 5.1558 -8.0191 39 1 7.0409 5.0456 -8.4311 40 1 8.7490 6.9256 -9.7885 41 1 6.3706 3.3702 -1.9816 42 1 7.3811 4.8052 -2.2778 43 1 6.6692 4.5348 -0.6690 44 1 1.3342 4.5115 -0.0001 45 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845468029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:13 Heat of formation + Delta-G solvation = -25.484172 kcal Electronic energy + Delta-G solvation = -29275.340863 eV Core-core repulsion = 25066.867391 eV Total energy + Delta-G solvation = -4208.473473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.39620 -41.18267 -40.95644 -38.83591 -37.60616 -36.01705 -35.28986 -33.59355 -32.19084 -31.94568 -31.45846 -29.15380 -28.56299 -27.44828 -27.09107 -25.33931 -23.74390 -23.50297 -22.73436 -21.55935 -21.39102 -19.36402 -19.13736 -18.57079 -17.73960 -17.66196 -17.30557 -16.92328 -16.73821 -16.67218 -16.39665 -15.92993 -15.35525 -15.27048 -15.00300 -14.84183 -14.56505 -14.25991 -14.06945 -13.99994 -13.85280 -13.58531 -13.32825 -13.20144 -13.15493 -13.03571 -12.90575 -12.79841 -12.73656 -12.38329 -12.21652 -12.14376 -12.04020 -11.79992 -11.59485 -11.50972 -11.23203 -10.97679 -10.59521 -10.28017 -10.04731 -9.28672 -8.28073 -6.43836 -0.05109 0.15224 0.31419 0.45965 1.15982 1.42001 1.42917 1.56996 1.94211 1.99620 2.30273 2.41322 2.69601 3.02075 3.18637 3.41897 3.50873 3.58480 3.76748 3.79139 3.88640 4.16773 4.21860 4.33238 4.33511 4.40855 4.45113 4.55464 4.58644 4.61636 4.63275 4.69463 4.78837 4.80280 4.84781 4.98280 5.02310 5.15429 5.18253 5.28644 5.44207 5.46874 5.50325 5.62793 5.70046 5.88339 6.05967 6.34246 6.57333 6.77203 7.01135 7.27130 8.79989 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.002146 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.892865 B =13044.997393 C =13296.770226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.125 3.875 4 C -0.170 4.170 5 C -0.056 4.056 6 C -0.169 4.169 7 C 0.158 3.842 8 N -0.341 5.341 9 N -0.078 5.078 10 N -0.216 5.216 11 C -0.120 4.120 12 C 0.539 3.461 13 O -0.529 6.529 14 O -0.354 6.354 15 C 0.218 3.782 16 H 0.018 0.982 17 C -0.141 4.141 18 C -0.548 4.548 19 H 0.060 0.940 20 C 0.018 3.982 21 N -0.914 5.914 22 Si 0.982 3.018 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.269 1.269 26 C 0.152 3.848 27 C -0.099 4.099 28 C -0.058 4.058 29 C -0.220 4.220 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.027 0.973 38 H 0.039 0.961 39 H 0.086 0.914 40 H 0.272 0.728 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 -12.383 26.399 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.079 3.921 4 C -0.189 4.189 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.041 3.959 8 N -0.126 5.126 9 N -0.058 5.058 10 N -0.089 5.089 11 C -0.257 4.257 12 C 0.383 3.617 13 O -0.419 6.419 14 O -0.270 6.270 15 C 0.165 3.835 16 H 0.036 0.964 17 C -0.199 4.199 18 C -0.586 4.586 19 H 0.079 0.921 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.805 3.195 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.195 1.195 26 C 0.013 3.987 27 C -0.157 4.157 28 C -0.076 4.076 29 C -0.239 4.239 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.312 -12.060 26.236 31.391 hybrid contribution 0.492 0.188 -0.900 1.043 sum -11.820 -11.872 25.336 30.374 Atomic orbital electron populations 1.23347 0.76441 1.05652 1.02200 1.86063 1.23497 1.27007 1.88297 1.19432 0.93083 0.84645 0.94904 1.20717 0.91545 0.99651 1.06940 1.21250 1.01391 0.90268 0.94508 1.19838 0.94104 0.94453 1.08632 1.21340 1.05749 0.94096 0.74750 1.50832 1.11555 1.36194 1.14026 1.81853 1.13953 1.13474 0.96521 1.74748 1.06582 1.14433 1.13178 1.20224 0.96385 1.13451 0.95641 1.19918 0.83851 0.75428 0.82533 1.90722 1.24190 1.43377 1.83609 1.86632 1.50084 1.67778 1.22466 1.20454 0.86229 0.96207 0.80643 0.96403 1.21990 1.01475 0.95415 1.01042 1.21290 1.21617 1.04107 1.11579 0.92134 1.25786 0.93861 1.00646 0.97846 1.70005 1.22019 1.35144 1.27979 0.85145 0.78371 0.77964 0.77980 1.19297 1.19692 1.19451 1.22228 0.92250 0.95204 0.89022 1.20993 0.90035 0.99649 1.05035 1.21141 0.94234 0.97904 0.94341 1.21458 1.01210 0.92025 1.09167 0.92303 0.86293 0.91266 0.83956 0.82188 0.84887 0.83083 0.95402 0.94158 0.89581 0.91865 0.87206 0.89066 0.85454 0.84395 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.57 10.50 -92.47 -0.97 -6.54 16 3 C 0.13 2.12 6.69 22.51 0.15 2.27 16 4 C -0.17 -2.57 9.99 22.37 0.22 -2.35 16 5 C -0.06 -0.68 9.69 22.25 0.22 -0.46 16 6 C -0.17 -2.22 5.46 -19.85 -0.11 -2.33 16 7 C 0.16 1.73 6.43 85.64 0.55 2.28 16 8 N -0.34 -7.65 3.61 -337.45 -1.22 -8.87 16 9 N -0.08 -2.48 13.78 37.02 0.51 -1.97 16 10 N -0.22 -8.59 12.39 -50.03 -0.62 -9.21 16 11 C -0.12 -4.62 7.02 40.79 0.29 -4.34 16 12 C 0.54 25.30 7.93 70.23 0.56 25.86 16 13 O -0.53 -25.03 13.99 19.80 0.28 -24.75 16 14 O -0.35 -19.25 9.87 -56.63 -0.56 -19.81 16 15 C 0.22 12.61 2.56 29.85 0.08 12.69 16 16 H 0.02 1.13 7.16 -2.39 -0.02 1.12 16 17 C -0.14 -7.64 9.33 71.98 0.67 -6.97 16 18 C -0.55 -32.90 8.90 25.60 0.23 -32.67 16 19 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 20 C 0.02 1.05 5.30 84.65 0.45 1.50 16 21 N -0.91 -53.23 11.32 21.45 0.24 -52.99 16 22 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 C 0.15 4.04 7.02 41.74 0.29 4.33 16 27 C -0.10 -1.74 9.49 71.24 0.68 -1.06 16 28 C -0.06 -0.85 9.69 22.25 0.22 -0.63 16 29 C -0.22 -3.32 9.04 22.36 0.20 -3.12 16 30 H 0.06 0.51 7.67 -2.39 -0.02 0.50 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 33 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.16 0.96 7.98 -2.91 -0.02 0.94 16 35 H 0.13 1.03 8.08 -2.38 -0.02 1.01 16 36 H 0.15 0.46 7.09 -2.39 -0.02 0.44 16 37 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 4.87 6.07 -2.39 -0.01 4.86 16 40 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 41 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 2.16 6.45 -2.39 -0.02 2.14 16 43 H 0.13 0.88 7.18 -2.39 -0.02 0.87 16 44 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 45 H 0.14 1.63 6.30 -2.91 -0.02 1.62 16 Total: -1.00 -80.59 387.11 6.51 -74.08 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.02 Total: 7.20 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.80 Total: -3.72 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.09 Total: -73.04 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.25 Total: -51.10 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -80.59 6.51 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.597 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds