Wall clock time and date at job start Wed Apr 1 2020 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29954 * 126.28702 * 2 1 4 4 O 1.21301 * 110.25079 * 179.68617 * 3 2 1 5 5 C 1.33646 * 109.81205 * 0.46312 * 4 3 2 6 6 C 1.50700 * 126.55278 * 179.80078 * 5 4 3 7 7 H 1.08998 * 109.47037 * 194.69310 * 6 5 4 8 8 C 1.52999 * 109.46823 * 74.69387 * 6 5 4 9 9 N 1.46497 * 109.46990 * 314.69280 * 6 5 4 10 10 C 1.46504 * 119.99967 * 60.00081 * 9 6 5 11 11 C 1.34776 * 119.99835 * 239.99534 * 9 6 5 12 12 O 1.21282 * 120.00169 * 0.02562 * 11 9 6 13 13 C 1.50699 * 119.99736 * 180.02562 * 11 9 6 14 14 C 1.50705 * 109.46833 * 180.02562 * 13 11 9 15 15 C 1.38301 * 119.92683 * 269.72537 * 14 13 11 16 16 C 1.38108 * 120.06749 * 179.72981 * 15 14 13 17 17 C 1.38877 * 119.92599 * 0.56614 * 16 15 14 18 18 O 1.35756 * 120.06639 * 179.68510 * 17 16 15 19 19 C 1.34829 * 116.99780 * 174.48327 * 18 17 16 20 20 H 1.08000 * 120.00313 * 5.06696 * 19 18 17 21 21 C 1.38655 * 119.99933 * 185.05368 * 19 18 17 22 22 N 1.31558 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47236 * 90.00412 * 23 21 19 25 25 H 1.48497 * 109.47318 * 210.00584 * 23 21 19 26 26 H 1.48505 * 109.47030 * 330.00487 * 23 21 19 27 27 C 1.38881 * 119.86885 * 359.70710 * 17 16 15 28 28 C 1.38107 * 119.92554 * 359.97438 * 27 17 16 29 29 N 1.31132 * 106.89446 * 359.54359 * 5 4 3 30 30 H 1.09004 * 109.47356 * 270.02375 * 1 2 3 31 31 H 1.09003 * 109.47689 * 30.02561 * 1 2 3 32 32 H 1.09005 * 109.47206 * 150.02797 * 1 2 3 33 33 H 1.08998 * 109.47251 * 299.99792 * 8 6 5 34 34 H 1.08998 * 109.47187 * 59.99915 * 8 6 5 35 35 H 1.08997 * 109.46922 * 180.02562 * 8 6 5 36 36 H 1.08997 * 109.46818 * 89.99939 * 10 9 6 37 37 H 1.09003 * 109.46622 * 209.99694 * 10 9 6 38 38 H 1.08998 * 109.47239 * 329.99541 * 10 9 6 39 39 H 1.08998 * 109.47351 * 300.00047 * 13 11 9 40 40 H 1.08996 * 109.47234 * 60.00325 * 13 11 9 41 41 H 1.08001 * 119.96974 * 359.97438 * 15 14 13 42 42 H 1.07991 * 120.03559 * 180.27392 * 16 15 14 43 43 H 0.97007 * 119.99581 * 179.97438 * 22 21 19 44 44 H 1.07991 * 120.03929 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96346 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0062 5 6 3.5299 -0.6211 0.0008 6 6 4.7970 -1.4369 0.0013 7 1 4.5652 -2.4683 -0.2645 8 6 5.4274 -1.3988 1.3948 9 7 5.7365 -0.8803 -0.9752 10 6 6.2048 0.5009 -0.8363 11 6 6.1701 -1.6389 -2.0013 12 8 5.7822 -2.7822 -2.1166 13 6 7.1371 -1.0665 -3.0055 14 6 7.4604 -2.1105 -4.0431 15 6 8.5313 -2.9647 -3.8521 16 6 8.8268 -3.9262 -4.7984 17 6 8.0545 -4.0270 -5.9483 18 8 8.3464 -4.9669 -6.8833 19 6 7.4910 -5.0867 -7.9186 20 1 6.6660 -4.3970 -8.0201 21 6 7.6706 -6.0950 -8.8532 22 7 8.6753 -6.9352 -8.7295 23 14 6.4859 -6.2605 -10.2880 24 1 6.9785 -5.4525 -11.4324 25 1 6.3939 -7.6865 -10.6921 26 1 5.1434 -5.7740 -9.8801 27 6 6.9833 -3.1642 -6.1398 28 6 6.6889 -2.2091 -5.1867 29 7 2.3030 -1.0840 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3634 -0.8903 -0.5134 33 1 5.6592 -0.3674 1.6607 34 1 4.7283 -1.8129 2.1214 35 1 6.3441 -1.9885 1.3951 36 1 7.1094 0.5184 -0.2284 37 1 6.4216 0.9119 -1.8223 38 1 5.4318 1.0999 -0.3548 39 1 6.6871 -0.2001 -3.4903 40 1 8.0523 -0.7636 -2.4969 41 1 9.1347 -2.8823 -2.9602 42 1 9.6604 -4.5957 -4.6467 43 1 8.8007 -7.6409 -9.3832 44 1 6.3812 -3.2399 -7.0331 45 1 5.8557 -1.5380 -5.3348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847211697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:01 Heat of formation + Delta-G solvation = 39.276239 kcal Electronic energy + Delta-G solvation = -29249.175655 eV Core-core repulsion = 25043.510405 eV Total energy + Delta-G solvation = -4205.665250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.93933 -40.30448 -38.89175 -36.98928 -36.43854 -36.20412 -33.67360 -32.45986 -31.78665 -30.68984 -30.12365 -29.51095 -27.26747 -26.76196 -25.31262 -24.84566 -23.61069 -21.97887 -21.89482 -20.58458 -19.33473 -18.49585 -17.95600 -17.71931 -17.35234 -16.96549 -16.58064 -15.89608 -15.11778 -14.67535 -14.54105 -14.43223 -14.25198 -13.98313 -13.74140 -13.69191 -13.47120 -13.34106 -13.27528 -13.09400 -12.85507 -12.69227 -12.66244 -12.49475 -12.45654 -11.96946 -11.85239 -11.67351 -11.51210 -11.33369 -11.24527 -10.83528 -10.74507 -10.59311 -10.40676 -10.28191 -9.82287 -9.29908 -9.17750 -8.79537 -8.12684 -7.14462 -6.42026 -4.00463 0.74247 1.83436 2.21970 2.27281 2.28443 2.63144 2.68939 3.14826 3.16426 3.21126 3.32508 3.69057 3.99630 4.32521 4.44201 4.50944 4.69641 4.75769 4.90972 4.97808 5.01945 5.05873 5.10316 5.11734 5.19527 5.21622 5.26802 5.33377 5.39174 5.40682 5.52483 5.61632 5.64279 5.70128 5.74057 5.86528 6.04799 6.24198 6.44095 6.71798 6.92175 7.02446 7.10327 7.26463 7.38988 7.47728 7.81005 7.86110 8.03286 8.06670 9.03769 9.74094 10.76041 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.002183 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.497032 B =12821.729982 C =13964.232364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.169 3.831 3 N -0.388 5.388 4 O 0.078 5.922 5 C 0.178 3.822 6 C 0.232 3.768 7 H 0.146 0.854 8 C -0.159 4.159 9 N -0.623 5.623 10 C 0.069 3.931 11 C 0.515 3.485 12 O -0.508 6.508 13 C -0.075 4.075 14 C -0.174 4.174 15 C -0.058 4.058 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.232 4.232 28 C -0.056 4.056 29 N -0.472 5.472 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 17.220 20.081 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.097 5.097 4 O 0.021 5.979 5 C -0.044 4.044 6 C 0.125 3.875 7 H 0.163 0.837 8 C -0.218 4.218 9 N -0.361 5.361 10 C -0.074 4.074 11 C 0.304 3.696 12 O -0.380 6.380 13 C -0.114 4.114 14 C -0.175 4.175 15 C -0.076 4.076 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.251 4.251 28 C -0.074 4.074 29 N -0.206 5.206 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.199 16.714 19.821 27.511 hybrid contribution -0.633 0.043 -0.699 0.944 sum -9.832 16.757 19.122 27.260 Atomic orbital electron populations 1.20161 0.82776 1.04887 1.04330 1.25962 1.00699 0.83352 1.00341 1.74619 0.89541 1.24009 1.21533 1.85290 1.22285 1.24720 1.65631 1.29367 0.97260 0.82185 0.95589 1.19519 0.79852 0.96747 0.91394 0.83700 1.22182 1.02350 1.03802 0.93425 1.48108 1.45909 1.14655 1.27384 1.22002 1.00460 0.81325 1.03563 1.21301 0.81651 0.85991 0.80650 1.90767 1.56361 1.17721 1.73172 1.20438 0.98190 0.98385 0.94414 1.18626 1.00542 1.01770 0.96602 1.20393 0.96082 0.94024 0.97146 1.20156 1.03556 1.02990 0.94349 1.19390 0.92313 0.88915 0.89038 1.83977 1.46530 1.47825 1.29755 1.21327 1.08737 1.15409 1.01222 0.89091 1.25286 0.97622 0.94847 0.98787 1.70044 1.28328 1.15982 1.35433 0.85717 0.79648 0.78041 0.80065 1.19903 1.20251 1.19197 1.21102 1.01995 0.99976 1.02073 1.20503 0.96893 0.96855 0.93157 1.71921 0.99523 1.29472 1.19722 0.89239 0.89425 0.88845 0.91274 0.90503 0.89596 0.91596 0.90077 0.90603 0.88821 0.88535 0.87311 0.86507 0.92054 0.85605 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.00 0.38 -0.05 16 2 C 0.17 1.84 8.22 -156.37 -1.28 0.56 16 3 N -0.39 -4.45 12.16 30.90 0.38 -4.07 16 4 O 0.08 0.82 8.86 18.09 0.16 0.98 16 5 C 0.18 1.91 7.18 -13.05 -0.09 1.82 16 6 C 0.23 2.20 3.19 -69.08 -0.22 1.98 16 7 H 0.15 1.68 6.90 -51.93 -0.36 1.32 16 8 C -0.16 -0.99 9.18 37.16 0.34 -0.65 16 9 N -0.62 -5.97 2.75 -175.26 -0.48 -6.46 16 10 C 0.07 0.42 9.26 59.85 0.55 0.97 16 11 C 0.51 6.77 7.67 -10.99 -0.08 6.69 16 12 O -0.51 -9.11 15.36 5.56 0.09 -9.02 16 13 C -0.07 -0.89 4.38 -29.03 -0.13 -1.01 16 14 C -0.17 -2.96 4.38 -104.57 -0.46 -3.42 16 15 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 16 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 17 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 18 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 19 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 23 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 28 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 29 N -0.47 -5.76 11.55 -9.86 -0.11 -5.87 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.34 7.67 -51.93 -0.40 -0.05 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.42 6.44 -51.93 -0.33 0.09 16 38 H 0.08 0.45 5.48 -51.93 -0.28 0.16 16 39 H 0.09 0.92 7.34 -51.93 -0.38 0.54 16 40 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 45 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -36.05 383.18 -6.73 -42.78 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.68 Total: 2.39 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.58 Total: -12.32 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.54 Total: -41.29 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.25 Total: -13.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.05 -6.73 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847211697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.060 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds