Wall clock time and date at job start Wed Apr 1 2020 04:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29954 * 126.28702 * 2 1 4 4 O 1.21301 * 110.25079 * 179.68617 * 3 2 1 5 5 C 1.33646 * 109.81205 * 0.46312 * 4 3 2 6 6 C 1.50700 * 126.55278 * 179.80078 * 5 4 3 7 7 H 1.08998 * 109.47037 * 194.69310 * 6 5 4 8 8 C 1.52999 * 109.46823 * 74.69387 * 6 5 4 9 9 N 1.46497 * 109.46990 * 314.69280 * 6 5 4 10 10 C 1.46504 * 119.99967 * 60.00081 * 9 6 5 11 11 C 1.34776 * 119.99835 * 239.99534 * 9 6 5 12 12 O 1.21282 * 120.00169 * 0.02562 * 11 9 6 13 13 C 1.50699 * 119.99736 * 180.02562 * 11 9 6 14 14 C 1.50705 * 109.46833 * 180.02562 * 13 11 9 15 15 C 1.38301 * 119.92683 * 269.72537 * 14 13 11 16 16 C 1.38108 * 120.06749 * 179.72981 * 15 14 13 17 17 C 1.38877 * 119.92599 * 0.56614 * 16 15 14 18 18 O 1.35756 * 120.06639 * 179.68510 * 17 16 15 19 19 C 1.34829 * 116.99780 * 174.48327 * 18 17 16 20 20 H 1.08000 * 120.00313 * 5.06696 * 19 18 17 21 21 C 1.38655 * 119.99933 * 185.05368 * 19 18 17 22 22 N 1.31558 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00231 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47236 * 90.00412 * 23 21 19 25 25 H 1.48497 * 109.47318 * 210.00584 * 23 21 19 26 26 H 1.48505 * 109.47030 * 330.00487 * 23 21 19 27 27 C 1.38881 * 119.86885 * 359.70710 * 17 16 15 28 28 C 1.38107 * 119.92554 * 359.97438 * 27 17 16 29 29 N 1.31132 * 106.89446 * 359.54359 * 5 4 3 30 30 H 1.09004 * 109.47356 * 270.02375 * 1 2 3 31 31 H 1.09003 * 109.47689 * 30.02561 * 1 2 3 32 32 H 1.09005 * 109.47206 * 150.02797 * 1 2 3 33 33 H 1.08998 * 109.47251 * 299.99792 * 8 6 5 34 34 H 1.08998 * 109.47187 * 59.99915 * 8 6 5 35 35 H 1.08997 * 109.46922 * 180.02562 * 8 6 5 36 36 H 1.08997 * 109.46818 * 89.99939 * 10 9 6 37 37 H 1.09003 * 109.46622 * 209.99694 * 10 9 6 38 38 H 1.08998 * 109.47239 * 329.99541 * 10 9 6 39 39 H 1.08998 * 109.47351 * 300.00047 * 13 11 9 40 40 H 1.08996 * 109.47234 * 60.00325 * 13 11 9 41 41 H 1.08001 * 119.96974 * 359.97438 * 15 14 13 42 42 H 1.07991 * 120.03559 * 180.27392 * 16 15 14 43 43 H 0.97007 * 119.99581 * 179.97438 * 22 21 19 44 44 H 1.07991 * 120.03929 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96346 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0062 5 6 3.5299 -0.6211 0.0008 6 6 4.7970 -1.4369 0.0013 7 1 4.5652 -2.4683 -0.2645 8 6 5.4274 -1.3988 1.3948 9 7 5.7365 -0.8803 -0.9752 10 6 6.2048 0.5009 -0.8363 11 6 6.1701 -1.6389 -2.0013 12 8 5.7822 -2.7822 -2.1166 13 6 7.1371 -1.0665 -3.0055 14 6 7.4604 -2.1105 -4.0431 15 6 8.5313 -2.9647 -3.8521 16 6 8.8268 -3.9262 -4.7984 17 6 8.0545 -4.0270 -5.9483 18 8 8.3464 -4.9669 -6.8833 19 6 7.4910 -5.0867 -7.9186 20 1 6.6660 -4.3970 -8.0201 21 6 7.6706 -6.0950 -8.8532 22 7 8.6753 -6.9352 -8.7295 23 14 6.4859 -6.2605 -10.2880 24 1 6.9785 -5.4525 -11.4324 25 1 6.3939 -7.6865 -10.6921 26 1 5.1434 -5.7740 -9.8801 27 6 6.9833 -3.1642 -6.1398 28 6 6.6889 -2.2091 -5.1867 29 7 2.3030 -1.0840 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3634 -0.8903 -0.5134 33 1 5.6592 -0.3674 1.6607 34 1 4.7283 -1.8129 2.1214 35 1 6.3441 -1.9885 1.3951 36 1 7.1094 0.5184 -0.2284 37 1 6.4216 0.9119 -1.8223 38 1 5.4318 1.0999 -0.3548 39 1 6.6871 -0.2001 -3.4903 40 1 8.0523 -0.7636 -2.4969 41 1 9.1347 -2.8823 -2.9602 42 1 9.6604 -4.5957 -4.6467 43 1 8.8007 -7.6409 -9.3832 44 1 6.3812 -3.2399 -7.0331 45 1 5.8557 -1.5380 -5.3348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847211697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:00 Heat of formation + Delta-G solvation = 13.681589 kcal Electronic energy + Delta-G solvation = -29250.285523 eV Core-core repulsion = 25043.510405 eV Total energy + Delta-G solvation = -4206.775118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.75384 -41.34799 -40.55729 -38.40324 -37.46238 -37.20071 -34.56927 -34.30441 -32.96479 -31.79395 -31.64903 -30.15635 -28.24882 -27.83089 -27.04608 -25.78723 -24.39927 -23.62816 -23.00941 -21.86892 -20.27684 -19.82610 -19.31895 -18.82862 -18.51291 -18.25949 -17.45462 -16.85652 -16.36557 -16.33335 -15.88905 -15.77857 -15.49101 -15.12852 -15.03417 -14.61502 -14.52667 -14.37924 -14.32370 -14.08642 -13.96247 -13.64197 -13.59492 -13.38729 -13.26952 -13.05687 -12.94992 -12.77496 -12.62012 -12.48570 -12.41086 -12.29227 -12.19952 -12.13896 -12.12468 -11.17454 -11.08525 -10.92426 -10.74380 -9.95564 -9.74891 -8.89378 -8.47483 -6.15389 -0.06560 0.62929 0.66919 1.03944 1.33275 1.41134 1.42644 1.51071 1.74945 1.81000 2.17277 2.61951 2.83014 2.95950 3.15554 3.53405 3.63445 3.77283 3.85606 3.98187 4.05165 4.17132 4.20244 4.26500 4.38921 4.46643 4.52377 4.57053 4.60348 4.65424 4.69715 4.72277 4.80327 4.83584 4.84463 5.01246 5.06665 5.11365 5.14302 5.15241 5.31221 5.33843 5.57822 5.72751 5.78491 6.03196 6.16666 6.29593 6.97215 7.01172 7.12016 7.78725 8.75898 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.002183 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.497032 B =12821.729982 C =13964.232364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.161 3.839 3 N -0.404 5.404 4 O 0.084 5.916 5 C 0.182 3.818 6 C 0.231 3.769 7 H 0.119 0.881 8 C -0.151 4.151 9 N -0.613 5.613 10 C 0.059 3.941 11 C 0.516 3.484 12 O -0.569 6.569 13 C -0.073 4.073 14 C -0.147 4.147 15 C -0.053 4.053 16 C -0.205 4.205 17 C 0.112 3.888 18 O -0.233 6.233 19 C -0.414 4.414 20 H 0.098 0.902 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.257 1.257 27 C -0.245 4.245 28 C -0.062 4.062 29 N -0.503 5.503 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.114 0.886 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 20.770 22.297 31.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 N -0.114 5.114 4 O 0.028 5.972 5 C -0.041 4.041 6 C 0.124 3.876 7 H 0.137 0.863 8 C -0.209 4.209 9 N -0.347 5.347 10 C -0.082 4.082 11 C 0.306 3.694 12 O -0.446 6.446 13 C -0.112 4.112 14 C -0.148 4.148 15 C -0.071 4.071 16 C -0.224 4.224 17 C 0.062 3.938 18 O -0.140 6.140 19 C -0.490 4.490 20 H 0.116 0.884 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.180 1.180 27 C -0.265 4.265 28 C -0.080 4.080 29 N -0.238 5.238 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.103 20.365 22.109 31.711 hybrid contribution -0.384 -0.774 -1.023 1.340 sum -10.487 19.591 21.085 30.633 Atomic orbital electron populations 1.20361 0.80462 1.05640 1.05751 1.26638 1.02188 0.82784 0.99508 1.74594 0.89918 1.24400 1.22465 1.85272 1.22014 1.24375 1.65542 1.29562 0.97303 0.82364 0.94829 1.19589 0.79751 0.95179 0.93072 0.86316 1.22163 1.02321 1.05246 0.91172 1.48073 1.44845 1.15711 1.26118 1.22357 1.01695 0.78894 1.05279 1.21390 0.81440 0.85348 0.81192 1.90775 1.58718 1.20333 1.74764 1.20589 1.00300 0.97208 0.93123 1.19254 0.98038 1.01041 0.96434 1.20905 0.96587 0.92380 0.97240 1.20470 1.03341 1.04251 0.94385 1.19963 0.94455 0.89510 0.89904 1.83936 1.48168 1.50523 1.31348 1.21792 1.09241 1.16129 1.01825 0.88433 1.26590 0.99614 0.94114 1.01790 1.70187 1.30990 1.17403 1.37288 0.84594 0.77226 0.78416 0.76001 1.18472 1.19454 1.18046 1.21205 1.01487 1.00894 1.02882 1.20906 0.97913 0.96234 0.92955 1.71941 1.00471 1.30487 1.20883 0.87408 0.88195 0.88504 0.89305 0.90126 0.88977 0.88592 0.88470 0.90429 0.85538 0.84127 0.82999 0.86844 0.91828 0.86790 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.23 0.75 -0.02 16 2 C 0.16 3.28 8.22 138.46 1.14 4.42 16 3 N -0.40 -8.52 12.16 -60.29 -0.73 -9.25 16 4 O 0.08 1.57 8.86 74.81 0.66 2.23 16 5 C 0.18 3.58 7.18 88.38 0.63 4.21 16 6 C 0.23 3.92 3.19 44.25 0.14 4.06 16 7 H 0.12 2.72 6.90 -2.39 -0.02 2.71 16 8 C -0.15 -1.45 9.18 71.98 0.66 -0.79 16 9 N -0.61 -9.49 2.75 -826.80 -2.28 -11.76 16 10 C 0.06 0.40 9.26 127.77 1.18 1.59 16 11 C 0.52 11.77 7.67 87.66 0.67 12.44 16 12 O -0.57 -19.60 15.36 -3.03 -0.05 -19.65 16 13 C -0.07 -1.34 4.38 29.10 0.13 -1.21 16 14 C -0.15 -4.51 4.38 -19.83 -0.09 -4.60 16 15 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 16 C -0.21 -9.07 9.99 22.39 0.22 -8.85 16 17 C 0.11 5.84 6.65 22.58 0.15 5.99 16 18 O -0.23 -14.59 9.76 -22.79 -0.22 -14.82 16 19 C -0.41 -25.09 9.49 67.92 0.64 -24.44 16 20 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 22 N -0.92 -57.97 13.67 21.61 0.30 -57.67 16 23 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 27 C -0.25 -11.35 9.17 22.39 0.21 -11.15 16 28 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 29 N -0.50 -11.79 11.55 -303.16 -3.50 -15.30 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 0.52 7.67 -2.39 -0.02 0.50 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.10 0.40 6.44 -2.39 -0.02 0.39 16 38 H 0.08 0.57 5.48 -2.39 -0.01 0.56 16 39 H 0.13 1.63 7.34 -2.39 -0.02 1.61 16 40 H 0.14 1.48 8.05 -2.39 -0.02 1.46 16 41 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 43 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 44 H 0.11 5.40 5.64 -2.91 -0.02 5.39 16 45 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -87.44 383.18 4.58 -82.86 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.03 Total: 19.82 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 7.34 Total: -22.89 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -6.22 Total: -93.98 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: 0.39 Total: -32.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -87.44 4.58 -82.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847211697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.541 kcal (2) G-P(sol) polarization free energy of solvation -87.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds