Wall clock time and date at job start Wed Apr 1 2020 04:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29940 * 126.29174 * 2 1 4 4 O 1.21302 * 110.25752 * 179.68087 * 3 2 1 5 5 C 1.33648 * 109.80492 * 0.46970 * 4 3 2 6 6 C 1.50700 * 126.55224 * 179.80444 * 5 4 3 7 7 H 1.08990 * 109.47622 * 194.68273 * 6 5 4 8 8 C 1.52999 * 109.47194 * 74.67774 * 6 5 4 9 9 N 1.46503 * 109.46641 * 314.68663 * 6 5 4 10 10 C 1.46492 * 120.00426 * 59.99627 * 9 6 5 11 11 C 1.34783 * 119.99585 * 239.99673 * 9 6 5 12 12 O 1.21284 * 119.99976 * 0.02562 * 11 9 6 13 13 C 1.50699 * 120.00059 * 179.97438 * 11 9 6 14 14 C 1.50699 * 109.47151 * 180.02562 * 13 11 9 15 15 C 1.38328 * 119.96224 * 270.02423 * 14 13 11 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.06774 * 359.77134 * 16 15 14 18 18 C 1.38852 * 119.93464 * 0.50144 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.74702 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46908 * 119.99967 * 24 22 20 27 27 H 1.48504 * 109.47373 * 240.00300 * 24 22 20 28 28 C 1.38073 * 119.96539 * 89.99818 * 14 13 11 29 29 N 1.31134 * 106.89737 * 359.53070 * 5 4 3 30 30 H 1.08998 * 109.47542 * 270.02921 * 1 2 3 31 31 H 1.08998 * 109.46648 * 30.02972 * 1 2 3 32 32 H 1.09003 * 109.47068 * 150.03035 * 1 2 3 33 33 H 1.09003 * 109.47348 * 179.97438 * 8 6 5 34 34 H 1.08994 * 109.47720 * 300.00642 * 8 6 5 35 35 H 1.09008 * 109.47173 * 60.00365 * 8 6 5 36 36 H 1.08998 * 109.47741 * 270.00060 * 10 9 6 37 37 H 1.09001 * 109.47144 * 30.00541 * 10 9 6 38 38 H 1.09003 * 109.47209 * 149.99639 * 10 9 6 39 39 H 1.09004 * 109.46756 * 60.00007 * 13 11 9 40 40 H 1.08998 * 109.46908 * 300.00650 * 13 11 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 43 43 H 1.08006 * 120.03757 * 180.27571 * 17 16 15 44 44 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.03547 * 0.04988 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0473 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5298 -0.6213 0.0008 6 6 4.7969 -1.4372 0.0015 7 1 4.5651 -2.4685 -0.2642 8 6 5.4274 -1.3989 1.3950 9 7 5.7365 -0.8806 -0.9750 10 6 6.2048 0.5005 -0.8362 11 6 6.1702 -1.6393 -2.0011 12 8 5.7821 -2.7826 -2.1163 13 6 7.1363 -1.0667 -3.0060 14 6 7.4598 -2.1108 -4.0433 15 6 8.5275 -2.9688 -3.8503 16 6 8.8272 -3.9286 -4.7996 17 6 8.0579 -4.0363 -5.9417 18 6 6.9889 -3.1728 -6.1410 19 8 6.2341 -3.2728 -7.2648 20 6 6.6462 -4.1492 -8.2030 21 1 7.4929 -4.7906 -8.0080 22 6 5.9828 -4.2268 -9.4181 23 7 4.9518 -3.4452 -9.6558 24 14 6.5542 -5.4405 -10.7181 25 1 7.7258 -6.1971 -10.2081 26 1 5.4527 -6.3862 -11.0306 27 1 6.9379 -4.7034 -11.9489 28 6 6.6898 -2.2104 -5.1851 29 7 2.3029 -1.0842 0.0007 30 1 -0.3634 0.0005 1.0276 31 1 -0.3632 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 6.3436 -1.9894 1.3957 34 1 5.6592 -0.3676 1.6608 35 1 4.7282 -1.8130 2.1217 36 1 5.5326 1.1681 -1.3752 37 1 6.2204 0.7746 0.2187 38 1 7.2101 0.5865 -1.2486 39 1 8.0516 -0.7630 -2.4977 40 1 6.6855 -0.2007 -3.4907 41 1 9.1283 -2.8890 -2.9564 42 1 9.6612 -4.5973 -4.6460 43 1 8.2897 -4.7890 -6.6807 44 1 4.4880 -3.4993 -10.5060 45 1 5.8566 -1.5399 -5.3353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847212018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:08 Heat of formation + Delta-G solvation = 13.157970 kcal Electronic energy + Delta-G solvation = -29441.525389 eV Core-core repulsion = 25234.727566 eV Total energy + Delta-G solvation = -4206.797824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -46.76177 -41.40633 -40.56222 -38.39074 -37.51324 -37.19586 -34.59584 -34.30560 -33.41031 -31.91028 -30.83623 -30.14801 -28.48644 -27.90729 -27.25896 -25.83603 -24.44006 -23.37795 -23.05584 -22.03713 -20.40634 -19.42831 -19.33331 -18.74951 -18.54747 -18.31720 -17.35778 -16.92954 -16.72146 -16.28379 -16.10012 -15.84114 -15.46837 -15.18198 -15.03245 -14.69313 -14.55203 -14.35536 -14.28254 -14.00757 -13.96191 -13.70430 -13.60444 -13.37352 -13.20047 -13.09142 -12.96750 -12.81016 -12.57815 -12.49023 -12.40770 -12.33868 -12.21469 -12.15273 -12.08019 -11.19878 -11.12319 -10.95416 -10.80347 -10.00698 -9.63379 -8.96811 -8.47537 -6.16072 -0.07586 0.51547 0.77097 1.02044 1.33396 1.38807 1.42343 1.52395 1.69573 1.79436 2.17192 2.61249 2.83193 2.94604 3.15724 3.43757 3.58087 3.76571 3.81902 3.95895 4.11048 4.14701 4.21573 4.32614 4.37513 4.41173 4.50793 4.55633 4.58064 4.61707 4.66563 4.71595 4.75174 4.75911 4.81697 4.99672 5.01095 5.07919 5.13354 5.17743 5.30379 5.33039 5.66220 5.73717 5.76411 6.02883 6.13138 6.28266 6.97211 6.99309 7.05193 7.79541 8.76445 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002424 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.741239 B =11548.639886 C =13036.735663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.160 3.840 3 N -0.404 5.404 4 O 0.087 5.913 5 C 0.179 3.821 6 C 0.231 3.769 7 H 0.120 0.880 8 C -0.150 4.150 9 N -0.611 5.611 10 C 0.058 3.942 11 C 0.520 3.480 12 O -0.567 6.567 13 C -0.087 4.087 14 C -0.027 4.027 15 C -0.175 4.175 16 C -0.073 4.073 17 C -0.246 4.246 18 C 0.110 3.890 19 O -0.237 6.237 20 C -0.412 4.412 21 H 0.101 0.899 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.020 2.980 25 H -0.251 1.251 26 H -0.269 1.269 27 H -0.266 1.266 28 C -0.194 4.194 29 N -0.504 5.504 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.155 0.845 40 H 0.118 0.882 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.272 0.728 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 9.789 25.416 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 N -0.113 5.113 4 O 0.030 5.970 5 C -0.043 4.043 6 C 0.124 3.876 7 H 0.137 0.863 8 C -0.208 4.208 9 N -0.346 5.346 10 C -0.083 4.083 11 C 0.310 3.690 12 O -0.444 6.444 13 C -0.126 4.126 14 C -0.028 4.028 15 C -0.193 4.193 16 C -0.091 4.091 17 C -0.265 4.265 18 C 0.060 3.940 19 O -0.144 6.144 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.223 4.223 23 N -0.562 5.562 24 Si 0.839 3.161 25 H -0.174 1.174 26 H -0.195 1.195 27 H -0.191 1.191 28 C -0.214 4.214 29 N -0.238 5.238 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.173 0.827 40 H 0.136 0.864 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.368 9.873 25.129 27.102 hybrid contribution -0.438 -0.645 -1.223 1.450 sum 1.930 9.228 23.906 25.698 Atomic orbital electron populations 1.20360 0.80471 1.05556 1.05821 1.26648 1.02233 0.82822 0.99574 1.74584 0.89867 1.24376 1.22487 1.85258 1.22029 1.24353 1.65396 1.29618 0.97400 0.82445 0.94862 1.19623 0.79691 0.95064 0.93195 0.86270 1.22181 1.02456 1.05387 0.90788 1.48020 1.44761 1.15722 1.26094 1.22331 1.01951 0.78715 1.05305 1.21121 0.81467 0.85336 0.81100 1.90773 1.58673 1.20343 1.74598 1.20757 1.01122 0.97342 0.93345 1.19198 0.94311 0.96749 0.92551 1.21003 0.99796 0.97703 1.00822 1.21159 0.98155 0.97681 0.92117 1.21302 0.99819 1.03447 1.01952 1.19888 0.91278 0.94748 0.88056 1.83937 1.47555 1.58015 1.24912 1.21871 1.16542 1.16291 0.94150 0.88164 1.26627 0.95788 1.00279 0.99556 1.70200 1.21001 1.39756 1.25259 0.84510 0.78715 0.76526 0.76299 1.17398 1.19452 1.19074 1.20210 1.03524 1.01355 0.96300 1.71938 1.00519 1.30482 1.20901 0.87157 0.88324 0.88627 0.88602 0.89116 0.89953 0.92522 0.87946 0.87009 0.82713 0.86428 0.82871 0.83537 0.86573 0.91903 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.51 71.23 0.75 -0.20 16 2 C 0.16 3.72 8.22 138.46 1.14 4.86 16 3 N -0.40 -9.71 12.16 -60.31 -0.73 -10.44 16 4 O 0.09 1.86 9.85 74.78 0.74 2.60 16 5 C 0.18 3.98 7.20 88.38 0.64 4.61 16 6 C 0.23 4.29 3.19 44.24 0.14 4.44 16 7 H 0.12 2.92 6.90 -2.39 -0.02 2.91 16 8 C -0.15 -1.48 9.15 71.98 0.66 -0.82 16 9 N -0.61 -10.85 2.75 -826.81 -2.28 -13.12 16 10 C 0.06 0.52 8.86 127.77 1.13 1.65 16 11 C 0.52 13.32 7.67 87.66 0.67 13.99 16 12 O -0.57 -20.92 15.36 -3.04 -0.05 -20.97 16 13 C -0.09 -1.89 4.38 29.10 0.13 -1.76 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 15 C -0.17 -5.45 9.70 22.30 0.22 -5.24 16 16 C -0.07 -2.60 10.04 22.25 0.22 -2.37 16 17 C -0.25 -11.31 9.17 22.39 0.21 -11.11 16 18 C 0.11 5.84 6.65 22.58 0.15 5.99 16 19 O -0.24 -15.08 9.76 -22.74 -0.22 -15.30 16 20 C -0.41 -25.11 9.49 67.92 0.64 -24.47 16 21 H 0.10 5.62 5.21 -2.91 -0.02 5.61 16 22 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 23 N -0.92 -58.76 13.67 21.61 0.30 -58.47 16 24 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 C -0.19 -8.83 9.65 22.39 0.22 -8.61 16 29 N -0.50 -13.19 11.55 -303.18 -3.50 -16.70 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.53 6.66 -2.39 -0.02 0.52 16 35 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.62 7.75 -2.39 -0.02 0.60 16 37 H 0.10 0.45 6.43 -2.39 -0.02 0.44 16 38 H 0.11 0.42 6.44 -2.39 -0.02 0.41 16 39 H 0.16 1.78 7.34 -2.38 -0.02 1.76 16 40 H 0.12 2.26 8.05 -2.39 -0.02 2.24 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 43 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 45 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -89.84 383.31 4.60 -85.24 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.03 Total: 21.82 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 7.29 Total: -21.11 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -6.22 Total: -98.72 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: 0.47 Total: -33.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -89.84 4.60 -85.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847212018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.394 kcal (2) G-P(sol) polarization free energy of solvation -89.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds