Wall clock time and date at job start Wed Apr 1 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35471 * 126.39027 * 2 1 4 4 N 1.33165 * 108.62568 * 180.02562 * 3 2 1 5 5 C 1.32662 * 109.12022 * 0.02562 * 4 3 2 6 6 C 1.40635 * 132.14118 * 180.29486 * 5 4 3 7 7 C 1.38509 * 119.08113 * 180.19592 * 6 5 4 8 8 C 1.47515 * 120.37771 * 179.73475 * 7 6 5 9 9 O 1.21506 * 119.99571 * 359.72420 * 8 7 6 10 10 O 1.34769 * 120.00038 * 179.72303 * 8 7 6 11 11 C 1.45194 * 116.99709 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47704 * 30.00147 * 11 10 8 13 13 C 1.53001 * 109.46970 * 269.99541 * 11 10 8 14 14 C 1.50702 * 109.46803 * 150.00276 * 11 10 8 15 15 O 1.21279 * 120.00127 * 15.64681 * 14 11 10 16 16 N 1.34783 * 119.99764 * 195.37135 * 14 11 10 17 17 C 1.46495 * 120.00016 * 5.43448 * 16 14 11 18 18 C 1.46496 * 119.99686 * 185.43814 * 16 14 11 19 19 C 1.50697 * 109.47338 * 90.00156 * 18 16 14 20 20 H 1.08000 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.37886 * 120.00469 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00357 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99255 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47021 * 90.00459 * 23 21 19 25 25 H 1.48505 * 109.46643 * 210.00220 * 23 21 19 26 26 H 1.48499 * 109.47344 * 329.99723 * 23 21 19 27 27 C 1.41823 * 119.24191 * 359.45836 * 7 6 5 28 28 C 1.34522 * 120.14566 * 0.30114 * 27 7 6 29 29 N 1.36408 * 126.38846 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47414 * 269.98070 * 1 2 3 31 31 H 1.08998 * 109.47038 * 29.98464 * 1 2 3 32 32 H 1.09002 * 109.47150 * 149.97840 * 1 2 3 33 33 H 1.08002 * 125.68859 * 0.03452 * 3 2 1 34 34 H 1.07998 * 120.46079 * 359.95438 * 6 5 4 35 35 H 1.08999 * 109.47431 * 305.11903 * 13 11 10 36 36 H 1.08999 * 109.47017 * 65.11716 * 13 11 10 37 37 H 1.09000 * 109.47032 * 185.11387 * 13 11 10 38 38 H 1.09004 * 109.46983 * 84.91502 * 17 16 14 39 39 H 1.09003 * 109.47332 * 204.91639 * 17 16 14 40 40 H 1.08996 * 109.47530 * 324.91799 * 17 16 14 41 41 H 1.09000 * 109.46932 * 209.99905 * 18 16 14 42 42 H 1.08998 * 109.47726 * 329.99958 * 18 16 14 43 43 H 0.96995 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.93041 * 180.27380 * 27 7 6 45 45 H 1.07998 * 119.52035 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0905 0.0000 4 7 3.5788 0.6842 -0.0006 5 6 3.6102 -0.6420 -0.0015 6 6 4.6750 -1.5607 0.0030 7 6 4.3941 -2.9170 -0.0036 8 6 5.4889 -3.9056 -0.0050 9 8 6.6450 -3.5317 -0.0055 10 8 5.2069 -5.2234 -0.0059 11 6 6.3340 -6.1387 -0.0067 12 1 7.1772 -5.6773 0.5073 13 6 6.7296 -6.4593 -1.4495 14 6 5.9483 -7.4110 0.7029 15 8 4.7796 -7.6584 0.9120 16 7 6.9020 -8.2767 1.1003 17 6 8.3168 -7.9275 0.9501 18 6 6.5236 -9.5668 1.6822 19 6 6.4013 -10.5951 0.5874 20 1 6.5864 -10.3156 -0.4392 21 6 6.0530 -11.8930 0.8964 22 7 5.9458 -12.7903 -0.0590 23 14 5.7336 -12.3766 2.6722 24 1 4.2961 -12.1787 2.9882 25 1 6.0915 -13.8045 2.8684 26 1 6.5592 -11.5314 3.5717 27 6 3.0418 -3.3444 -0.0031 28 6 2.0471 -2.4387 -0.0023 29 7 2.3162 -1.0981 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9784 2.1181 0.0005 34 1 5.6977 -1.2135 0.0076 35 1 5.8609 -6.8365 -1.9891 36 1 7.0946 -5.5546 -1.9357 37 1 7.5150 -7.2151 -1.4515 38 1 8.6387 -7.3385 1.8090 39 1 8.9117 -8.8389 0.8909 40 1 8.4526 -7.3451 0.0389 41 1 7.2870 -9.8823 2.3934 42 1 5.5674 -9.4674 2.1957 43 1 5.7012 -13.7034 0.1584 44 1 2.8100 -4.3992 -0.0037 45 1 1.0209 -2.7754 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848780534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:32 Heat of formation + Delta-G solvation = -16.934888 kcal Electronic energy + Delta-G solvation = -29354.610025 eV Core-core repulsion = 25146.507277 eV Total energy + Delta-G solvation = -4208.102748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.28070 -40.80553 -39.16834 -37.61507 -36.52712 -35.06328 -34.38016 -32.83836 -32.09739 -31.48451 -30.45640 -28.45698 -27.53450 -26.24342 -25.17815 -24.08659 -23.61221 -22.25382 -21.58302 -20.91146 -18.93852 -18.52139 -17.74814 -17.06092 -16.98389 -16.76423 -16.55395 -16.17756 -16.00147 -15.46980 -15.13412 -14.77915 -14.45750 -14.08977 -14.02824 -13.76133 -13.56788 -13.53530 -13.22132 -13.05866 -12.91980 -12.46385 -12.35988 -12.32257 -12.21321 -12.17365 -11.96410 -11.56064 -11.51538 -11.24881 -11.01265 -10.87250 -10.80128 -10.56412 -10.53306 -10.21045 -9.61071 -9.25661 -9.09967 -8.64820 -8.19824 -7.84547 -6.14763 -4.14464 -0.03872 0.65904 2.06851 2.10471 2.19828 2.51735 3.07903 3.18533 3.25401 3.31386 3.33373 3.62200 3.87873 4.04564 4.15725 4.32176 4.34441 4.53553 4.55868 4.68975 4.81579 4.90751 5.00735 5.02184 5.05819 5.07376 5.18642 5.27278 5.42293 5.44419 5.58975 5.61304 5.64568 5.71937 5.74818 5.96601 6.01260 6.15829 6.18009 6.23900 6.58100 6.59733 6.85315 7.17940 7.38731 7.49570 7.53129 8.04582 8.38600 8.74204 8.88041 9.44768 10.98265 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.002169 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.917820 B =12905.397672 C =13732.280368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.055 4.055 3 C 0.034 3.966 4 N -0.471 5.471 5 C 0.199 3.801 6 C 0.011 3.989 7 C -0.107 4.107 8 C 0.514 3.486 9 O -0.501 6.501 10 O -0.319 6.319 11 C 0.074 3.926 12 H 0.106 0.894 13 C -0.166 4.166 14 C 0.513 3.487 15 O -0.520 6.520 16 N -0.591 5.591 17 C 0.072 3.928 18 C 0.216 3.784 19 C -0.533 4.533 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.095 4.095 28 C 0.042 3.958 29 N -0.349 5.349 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.184 0.816 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.171 0.829 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 24.912 -0.457 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.171 4.171 3 C -0.121 4.121 4 N -0.190 5.190 5 C -0.042 4.042 6 C -0.009 4.009 7 C -0.114 4.114 8 C 0.358 3.642 9 O -0.390 6.390 10 O -0.234 6.234 11 C 0.015 3.985 12 H 0.123 0.877 13 C -0.224 4.224 14 C 0.298 3.702 15 O -0.396 6.396 16 N -0.324 5.324 17 C -0.072 4.072 18 C 0.096 3.904 19 C -0.571 4.571 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.116 4.116 28 C -0.078 4.078 29 N -0.022 5.022 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.201 0.799 34 H 0.186 0.814 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.189 0.811 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.030 25.114 -0.365 25.830 hybrid contribution -0.654 -1.014 0.775 1.434 sum -6.683 24.100 0.410 25.013 Atomic orbital electron populations 1.20240 0.86126 1.03816 1.03111 1.21434 0.95065 0.85195 1.15358 1.22417 0.87694 0.98838 1.03117 1.70668 1.21984 1.05925 1.20469 1.20540 0.83533 0.90939 1.09143 1.20687 0.98678 0.89009 0.92533 1.19000 0.92578 0.91422 1.08402 1.20733 0.87986 0.82460 0.72986 1.90851 1.21473 1.80827 1.45842 1.86654 1.38196 1.15398 1.83107 1.22693 0.88006 0.88562 0.99215 0.87656 1.22190 1.03652 1.03209 0.93308 1.19740 0.86382 0.84127 0.79957 1.90687 1.17932 1.75987 1.54960 1.47737 1.05226 1.18360 1.61108 1.21887 0.82674 1.02086 1.00521 1.19745 0.96628 0.79314 0.94720 1.21306 1.48066 0.92967 0.94769 0.90627 1.24853 0.94519 0.96275 0.97305 1.69888 1.47820 1.03388 1.32218 0.86851 0.79490 0.77973 0.85388 1.19851 1.21007 1.19032 1.21082 0.90051 1.01459 0.98992 1.21498 1.01677 0.79784 1.04859 1.42776 1.08817 1.05949 1.44608 0.90575 0.89465 0.91398 0.79860 0.81419 0.90410 0.91067 0.89198 0.93213 0.89821 0.91825 0.94820 0.94275 0.92473 0.81131 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.30 36.00 0.37 0.05 16 2 C -0.06 -0.45 7.02 -81.55 -0.57 -1.02 16 3 C 0.03 0.30 11.75 -17.96 -0.21 0.09 16 4 N -0.47 -5.68 11.31 -12.80 -0.14 -5.82 16 5 C 0.20 2.32 7.79 -155.95 -1.22 1.11 16 6 C 0.01 0.13 9.70 -38.58 -0.37 -0.25 16 7 C -0.11 -1.23 5.90 -104.65 -0.62 -1.85 16 8 C 0.51 7.08 7.87 34.51 0.27 7.35 16 9 O -0.50 -7.50 15.62 -19.27 -0.30 -7.80 16 10 O -0.32 -4.93 8.76 -47.21 -0.41 -5.34 16 11 C 0.07 1.16 2.14 -27.88 -0.06 1.10 16 12 H 0.11 1.50 6.35 -51.93 -0.33 1.17 16 13 C -0.17 -2.29 9.20 37.16 0.34 -1.95 16 14 C 0.51 10.37 6.96 -10.98 -0.08 10.29 16 15 O -0.52 -12.56 16.13 -13.57 -0.22 -12.78 16 16 N -0.59 -11.83 2.86 -182.96 -0.52 -12.36 16 17 C 0.07 1.06 9.80 59.84 0.59 1.65 16 18 C 0.22 5.13 4.25 -5.20 -0.02 5.11 16 19 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16 20 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 22 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 23 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 C -0.10 -0.93 9.56 -39.53 -0.38 -1.30 16 28 C 0.04 0.35 10.80 -16.68 -0.18 0.17 16 29 N -0.35 -3.43 2.94 -58.55 -0.17 -3.60 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.17 1.76 7.67 -52.49 -0.40 1.35 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.20 6.24 -51.93 -0.32 0.87 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 40 H 0.06 0.79 4.86 -51.93 -0.25 0.54 16 41 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 42 H 0.04 1.00 6.79 -51.93 -0.35 0.64 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.17 1.58 7.66 -52.48 -0.40 1.18 16 45 H 0.17 0.84 8.04 -52.49 -0.42 0.42 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -36.42 384.27 -8.27 -44.69 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.82 Total: -0.36 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -2.58 Total: 7.35 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.07 Total: -47.97 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.93 Total: -25.92 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.42 -8.27 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848780534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.760 kcal (2) G-P(sol) polarization free energy of solvation -36.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds