Wall clock time and date at job start Wed Apr 1 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35471 * 126.39027 * 2 1 4 4 N 1.33165 * 108.62568 * 180.02562 * 3 2 1 5 5 C 1.32662 * 109.12022 * 0.02562 * 4 3 2 6 6 C 1.40635 * 132.14118 * 180.29486 * 5 4 3 7 7 C 1.38509 * 119.08113 * 180.19592 * 6 5 4 8 8 C 1.47515 * 120.37771 * 179.73475 * 7 6 5 9 9 O 1.21506 * 119.99571 * 359.72420 * 8 7 6 10 10 O 1.34769 * 120.00038 * 179.72303 * 8 7 6 11 11 C 1.45194 * 116.99709 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47704 * 30.00147 * 11 10 8 13 13 C 1.53001 * 109.46970 * 269.99541 * 11 10 8 14 14 C 1.50702 * 109.46803 * 150.00276 * 11 10 8 15 15 O 1.21279 * 120.00127 * 15.64681 * 14 11 10 16 16 N 1.34783 * 119.99764 * 195.37135 * 14 11 10 17 17 C 1.46495 * 120.00016 * 5.43448 * 16 14 11 18 18 C 1.46496 * 119.99686 * 185.43814 * 16 14 11 19 19 C 1.50697 * 109.47338 * 90.00156 * 18 16 14 20 20 H 1.08000 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.37886 * 120.00469 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00357 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99255 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47021 * 90.00459 * 23 21 19 25 25 H 1.48505 * 109.46643 * 210.00220 * 23 21 19 26 26 H 1.48499 * 109.47344 * 329.99723 * 23 21 19 27 27 C 1.41823 * 119.24191 * 359.45836 * 7 6 5 28 28 C 1.34522 * 120.14566 * 0.30114 * 27 7 6 29 29 N 1.36408 * 126.38846 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47414 * 269.98070 * 1 2 3 31 31 H 1.08998 * 109.47038 * 29.98464 * 1 2 3 32 32 H 1.09002 * 109.47150 * 149.97840 * 1 2 3 33 33 H 1.08002 * 125.68859 * 0.03452 * 3 2 1 34 34 H 1.07998 * 120.46079 * 359.95438 * 6 5 4 35 35 H 1.08999 * 109.47431 * 305.11903 * 13 11 10 36 36 H 1.08999 * 109.47017 * 65.11716 * 13 11 10 37 37 H 1.09000 * 109.47032 * 185.11387 * 13 11 10 38 38 H 1.09004 * 109.46983 * 84.91502 * 17 16 14 39 39 H 1.09003 * 109.47332 * 204.91639 * 17 16 14 40 40 H 1.08996 * 109.47530 * 324.91799 * 17 16 14 41 41 H 1.09000 * 109.46932 * 209.99905 * 18 16 14 42 42 H 1.08998 * 109.47726 * 329.99958 * 18 16 14 43 43 H 0.96995 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.93041 * 180.27380 * 27 7 6 45 45 H 1.07998 * 119.52035 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3107 1.0905 0.0000 4 7 3.5788 0.6842 -0.0006 5 6 3.6102 -0.6420 -0.0015 6 6 4.6750 -1.5607 0.0030 7 6 4.3941 -2.9170 -0.0036 8 6 5.4889 -3.9056 -0.0050 9 8 6.6450 -3.5317 -0.0055 10 8 5.2069 -5.2234 -0.0059 11 6 6.3340 -6.1387 -0.0067 12 1 7.1772 -5.6773 0.5073 13 6 6.7296 -6.4593 -1.4495 14 6 5.9483 -7.4110 0.7029 15 8 4.7796 -7.6584 0.9120 16 7 6.9020 -8.2767 1.1003 17 6 8.3168 -7.9275 0.9501 18 6 6.5236 -9.5668 1.6822 19 6 6.4013 -10.5951 0.5874 20 1 6.5864 -10.3156 -0.4392 21 6 6.0530 -11.8930 0.8964 22 7 5.9458 -12.7903 -0.0590 23 14 5.7336 -12.3766 2.6722 24 1 4.2961 -12.1787 2.9882 25 1 6.0915 -13.8045 2.8684 26 1 6.5592 -11.5314 3.5717 27 6 3.0418 -3.3444 -0.0031 28 6 2.0471 -2.4387 -0.0023 29 7 2.3162 -1.0981 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9784 2.1181 0.0005 34 1 5.6977 -1.2135 0.0076 35 1 5.8609 -6.8365 -1.9891 36 1 7.0946 -5.5546 -1.9357 37 1 7.5150 -7.2151 -1.4515 38 1 8.6387 -7.3385 1.8090 39 1 8.9117 -8.8389 0.8909 40 1 8.4526 -7.3451 0.0389 41 1 7.2870 -9.8823 2.3934 42 1 5.5674 -9.4674 2.1957 43 1 5.7012 -13.7034 0.1584 44 1 2.8100 -4.3992 -0.0037 45 1 1.0209 -2.7754 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848780534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:31 Heat of formation + Delta-G solvation = -38.704498 kcal Electronic energy + Delta-G solvation = -29355.554026 eV Core-core repulsion = 25146.507277 eV Total energy + Delta-G solvation = -4209.046749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.99959 -41.98958 -40.63744 -38.46329 -37.67511 -36.73184 -35.13123 -34.80850 -33.29640 -32.34347 -31.17621 -30.27650 -28.23619 -27.62241 -26.21618 -25.38756 -24.41327 -23.79829 -22.25666 -22.00479 -20.42636 -19.54059 -19.13723 -18.60525 -18.15219 -17.80544 -17.47753 -17.26414 -17.05341 -16.97708 -16.33331 -16.08247 -15.83711 -15.19366 -14.88508 -14.77317 -14.64161 -14.36488 -14.30576 -14.15576 -13.91541 -13.74666 -13.66338 -13.46612 -13.34674 -13.23343 -12.99421 -12.92357 -12.84486 -12.62465 -12.45284 -12.04888 -12.04129 -12.01742 -11.93762 -11.73839 -11.27259 -10.82798 -10.70610 -9.98020 -9.50751 -8.89596 -8.33407 -6.38833 -0.87512 -0.06550 1.04044 1.15854 1.34789 1.38051 1.43893 1.46239 1.52275 1.79438 2.25014 2.31592 2.35941 3.00720 3.07563 3.30608 3.33590 3.38397 3.58573 3.71990 3.78726 3.83674 4.00305 4.19777 4.26968 4.31091 4.43134 4.50994 4.55136 4.61164 4.70833 4.76398 4.77506 4.84765 4.86097 4.91494 4.98740 5.06685 5.09803 5.12493 5.30641 5.43235 5.51155 5.52068 5.90150 6.21348 6.37864 6.52227 6.62849 6.66658 7.12528 7.27818 8.82920 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.002169 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.917820 B =12905.397672 C =13732.280368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.043 4.043 3 C 0.019 3.981 4 N -0.501 5.501 5 C 0.169 3.831 6 C 0.010 3.990 7 C -0.118 4.118 8 C 0.517 3.483 9 O -0.516 6.516 10 O -0.330 6.330 11 C 0.082 3.918 12 H 0.127 0.873 13 C -0.161 4.161 14 C 0.505 3.495 15 O -0.571 6.571 16 N -0.597 5.597 17 C 0.064 3.936 18 C 0.223 3.777 19 C -0.537 4.537 20 H 0.035 0.965 21 C 0.013 3.987 22 N -0.942 5.942 23 Si 0.945 3.055 24 H -0.276 1.276 25 H -0.276 1.276 26 H -0.238 1.238 27 C -0.109 4.109 28 C 0.056 3.944 29 N -0.355 5.355 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.213 0.787 34 H 0.166 0.834 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.268 0.732 44 H 0.172 0.828 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 26.753 0.759 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.158 4.158 3 C -0.135 4.135 4 N -0.221 5.221 5 C -0.070 4.070 6 C -0.010 4.010 7 C -0.125 4.125 8 C 0.363 3.637 9 O -0.406 6.406 10 O -0.246 6.246 11 C 0.024 3.976 12 H 0.144 0.856 13 C -0.218 4.218 14 C 0.292 3.708 15 O -0.450 6.450 16 N -0.329 5.329 17 C -0.078 4.078 18 C 0.101 3.899 19 C -0.575 4.575 20 H 0.053 0.947 21 C -0.186 4.186 22 N -0.582 5.582 23 Si 0.768 3.232 24 H -0.202 1.202 25 H -0.201 1.201 26 H -0.161 1.161 27 C -0.129 4.129 28 C -0.064 4.064 29 N -0.028 5.028 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.184 0.816 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.189 0.811 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.772 26.988 0.844 27.838 hybrid contribution -0.480 -1.437 0.308 1.546 sum -7.252 25.551 1.151 26.585 Atomic orbital electron populations 1.20441 0.83030 1.05401 1.04332 1.22176 0.96748 0.84295 1.12595 1.23060 0.86865 1.00638 1.02893 1.70620 1.23933 1.06403 1.21133 1.20575 0.84461 0.91098 1.10893 1.20657 0.98836 0.88961 0.92559 1.18910 0.92759 0.90878 1.09927 1.21049 0.88442 0.81943 0.72251 1.90828 1.22170 1.80794 1.46810 1.86660 1.38262 1.16210 1.83446 1.22577 0.88481 0.86768 0.99766 0.85596 1.22183 1.03226 1.04398 0.92016 1.20522 0.85701 0.85367 0.79247 1.90648 1.19995 1.77443 1.56882 1.47815 1.07520 1.17052 1.60544 1.22215 0.79493 1.02866 1.03224 1.19450 0.96599 0.80189 0.93679 1.21524 1.47571 0.94286 0.94157 0.94697 1.25812 0.94222 0.96242 1.02291 1.70035 1.49315 1.03981 1.34870 0.85758 0.79389 0.78293 0.79784 1.20196 1.20148 1.16094 1.21099 0.89643 1.01905 1.00283 1.21980 1.02922 0.78935 1.02517 1.43012 1.08516 1.06813 1.44475 0.89346 0.87417 0.90320 0.76993 0.81610 0.91830 0.88723 0.88683 0.90023 0.90023 0.89471 0.92579 0.95972 0.92252 0.81063 0.77527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.30 71.23 0.73 0.38 16 2 C -0.04 -0.59 7.02 41.21 0.29 -0.30 16 3 C 0.02 0.30 11.75 83.85 0.99 1.29 16 4 N -0.50 -11.83 11.31 -194.40 -2.20 -14.03 16 5 C 0.17 3.90 7.79 133.96 1.04 4.94 16 6 C 0.01 0.23 9.70 22.92 0.22 0.46 16 7 C -0.12 -2.74 5.90 -19.88 -0.12 -2.85 16 8 C 0.52 14.23 7.87 70.27 0.55 14.79 16 9 O -0.52 -15.23 15.62 19.82 0.31 -14.92 16 10 O -0.33 -10.26 8.76 -50.55 -0.44 -10.70 16 11 C 0.08 2.54 2.14 29.85 0.06 2.61 16 12 H 0.13 3.37 6.35 -2.39 -0.02 3.35 16 13 C -0.16 -4.34 9.20 71.98 0.66 -3.67 16 14 C 0.50 20.52 6.96 87.66 0.61 21.13 16 15 O -0.57 -28.35 16.13 15.26 0.25 -28.10 16 16 N -0.60 -23.63 2.86 -851.15 -2.43 -26.06 16 17 C 0.06 1.75 9.80 127.77 1.25 3.01 16 18 C 0.22 10.52 4.25 85.63 0.36 10.88 16 19 C -0.54 -30.57 9.94 25.60 0.25 -30.31 16 20 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 21 C 0.01 0.73 5.47 84.66 0.46 1.20 16 22 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 23 Si 0.94 43.35 27.47 68.60 1.88 45.24 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 27 C -0.11 -2.06 9.56 22.31 0.21 -1.85 16 28 C 0.06 0.83 10.80 83.08 0.90 1.72 16 29 N -0.36 -6.41 2.94 -339.15 -1.00 -7.40 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.08 0.26 8.12 -2.39 -0.02 0.24 16 33 H 0.21 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.17 3.64 7.67 -2.91 -0.02 3.62 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 2.44 6.24 -2.39 -0.01 2.42 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.08 2.30 8.03 -2.39 -0.02 2.28 16 40 H 0.09 1.98 4.86 -2.39 -0.01 1.97 16 41 H 0.06 2.41 7.13 -2.39 -0.02 2.39 16 42 H 0.02 1.13 6.79 -2.39 -0.02 1.11 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.17 3.18 7.66 -2.91 -0.02 3.16 16 45 H 0.21 1.35 8.04 -2.91 -0.02 1.33 16 Total: -1.00 -82.69 384.27 6.13 -76.56 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.97 Total: 13.95 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 8.49 Total: 23.41 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.33 Total: -105.44 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: 0.11 Total: -53.72 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.24 kcal Total: -82.69 6.13 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848780534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.854 kcal (2) G-P(sol) polarization free energy of solvation -82.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds