Wall clock time and date at job start Wed Apr 1 2020 03:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35474 * 126.38505 * 2 1 4 4 N 1.33164 * 108.61647 * 180.02562 * 3 2 1 5 5 C 1.32658 * 109.12664 * 0.02562 * 4 3 2 6 6 C 1.40624 * 132.14206 * 179.97438 * 5 4 3 7 7 C 1.38508 * 119.08539 * 179.97438 * 6 5 4 8 8 C 1.47509 * 120.38285 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99661 * 359.97438 * 8 7 6 10 10 O 1.34773 * 120.00524 * 179.97438 * 8 7 6 11 11 C 1.45195 * 117.00210 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47362 * 330.00304 * 11 10 8 13 13 C 1.53005 * 109.47195 * 89.99984 * 11 10 8 14 14 C 1.50698 * 109.46982 * 209.99802 * 11 10 8 15 15 O 1.21278 * 119.99933 * 0.02562 * 14 11 10 16 16 N 1.34781 * 119.99984 * 179.97438 * 14 11 10 17 17 C 1.46503 * 119.99904 * 359.97438 * 16 14 11 18 18 C 1.46494 * 119.99865 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46914 * 90.00380 * 18 16 14 20 20 H 1.07998 * 120.00229 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99907 * 180.02562 * 19 18 16 22 22 N 1.31518 * 120.00150 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00142 * 359.97438 * 21 19 18 24 24 H 1.48509 * 109.46891 * 90.00182 * 23 21 19 25 25 H 1.48496 * 109.47160 * 209.99921 * 23 21 19 26 26 H 1.48496 * 109.47112 * 330.00603 * 23 21 19 27 27 C 1.41830 * 119.24226 * 0.02562 * 7 6 5 28 28 C 1.34525 * 120.13906 * 359.97438 * 27 7 6 29 29 N 1.36410 * 126.38918 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47043 * 269.95189 * 1 2 3 31 31 H 1.08994 * 109.46953 * 29.96135 * 1 2 3 32 32 H 1.09008 * 109.46944 * 149.95769 * 1 2 3 33 33 H 1.07994 * 125.69071 * 0.04034 * 3 2 1 34 34 H 1.08001 * 120.46330 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47143 * 59.99752 * 13 11 10 36 36 H 1.09002 * 109.47350 * 180.02562 * 13 11 10 37 37 H 1.09008 * 109.46965 * 300.00009 * 13 11 10 38 38 H 1.09001 * 109.46728 * 90.00110 * 17 16 14 39 39 H 1.08998 * 109.47021 * 209.99916 * 17 16 14 40 40 H 1.08998 * 109.47150 * 330.00795 * 17 16 14 41 41 H 1.09003 * 109.47107 * 209.99549 * 18 16 14 42 42 H 1.08998 * 109.47699 * 330.00179 * 18 16 14 43 43 H 0.96999 * 120.00257 * 179.97438 * 22 21 19 44 44 H 1.07998 * 119.93233 * 180.27393 * 27 7 6 45 45 H 1.08000 * 119.51274 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3107 1.0906 0.0000 4 7 3.5788 0.6842 -0.0006 5 6 3.6103 -0.6420 -0.0015 6 6 4.6750 -1.5605 -0.0028 7 6 4.3942 -2.9168 -0.0030 8 6 5.4890 -3.9054 -0.0038 9 8 6.6451 -3.5315 -0.0048 10 8 5.2070 -5.2233 -0.0035 11 6 6.3342 -6.1386 -0.0038 12 1 7.1770 -5.6769 -0.5179 13 6 6.7307 -6.4599 1.4387 14 6 5.9481 -7.4106 -0.7138 15 8 4.8330 -7.5334 -1.1746 16 7 6.8424 -8.4113 -0.8375 17 6 8.1900 -8.2623 -0.2823 18 6 6.4673 -9.6476 -1.5282 19 6 6.7860 -9.5197 -2.9956 20 1 7.2237 -8.6085 -3.3757 21 6 6.5177 -10.5655 -3.8530 22 7 6.7963 -10.4541 -5.1335 23 14 5.7600 -12.1413 -3.1957 24 1 4.2794 -12.0403 -3.2537 25 1 6.2105 -13.2896 -4.0225 26 1 6.1873 -12.3466 -1.7885 27 6 3.0419 -3.3444 -0.0024 28 6 2.0472 -2.4387 -0.0011 29 7 2.3163 -1.0981 -0.0005 30 1 -0.3633 -0.0009 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5145 33 1 1.9783 2.1181 0.0006 34 1 5.6977 -1.2133 -0.0029 35 1 5.8878 -6.9216 1.9529 36 1 7.5771 -7.1466 1.4385 37 1 7.0098 -5.5398 1.9522 38 1 8.2013 -8.6240 0.7458 39 1 8.8948 -8.8413 -0.8790 40 1 8.4763 -7.2107 -0.3007 41 1 7.0261 -10.4832 -1.1067 42 1 5.3992 -9.8244 -1.4025 43 1 6.6079 -11.1901 -5.7367 44 1 2.8102 -4.3992 0.0019 45 1 1.0210 -2.7755 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848780535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:36 Heat of formation + Delta-G solvation = -12.926289 kcal Electronic energy + Delta-G solvation = -29389.103658 eV Core-core repulsion = 25181.174736 eV Total energy + Delta-G solvation = -4207.928922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.25148 -40.78928 -39.18998 -37.58753 -36.49668 -35.12455 -34.35024 -32.92320 -32.05787 -31.47913 -30.42978 -28.35395 -27.49902 -26.42099 -25.11977 -24.05982 -23.58485 -22.24964 -21.55605 -20.90817 -19.00336 -18.50644 -17.72662 -17.01599 -17.00291 -16.73365 -16.52552 -16.17356 -15.93942 -15.51665 -15.11947 -14.82183 -14.40025 -14.05199 -13.96399 -13.70079 -13.58926 -13.51464 -13.41843 -13.08631 -12.91995 -12.50215 -12.43594 -12.34558 -12.19795 -12.14720 -11.88460 -11.63301 -11.34276 -11.22230 -11.01887 -10.83124 -10.78911 -10.57362 -10.50193 -10.20298 -9.59904 -9.22682 -9.09345 -8.63712 -8.16825 -7.85289 -6.13049 -4.12891 -0.00425 0.68761 2.09224 2.13827 2.22177 2.54971 3.10671 3.22294 3.25535 3.31399 3.33030 3.62061 3.89827 4.07036 4.18115 4.33554 4.35064 4.56080 4.58627 4.66805 4.84230 4.85796 4.99300 5.03856 5.06428 5.09397 5.19828 5.28610 5.40469 5.46411 5.54535 5.56703 5.62299 5.68900 5.72748 5.89607 5.99628 6.12730 6.18795 6.23327 6.59097 6.60990 6.84041 7.17496 7.41867 7.52288 7.54429 8.04460 8.40024 8.75369 8.90346 9.45996 11.00189 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002242 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.018444 B =12485.075645 C =13293.731558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.056 4.056 3 C 0.034 3.966 4 N -0.471 5.471 5 C 0.199 3.801 6 C 0.011 3.989 7 C -0.106 4.106 8 C 0.515 3.485 9 O -0.500 6.500 10 O -0.318 6.318 11 C 0.072 3.928 12 H 0.111 0.889 13 C -0.176 4.176 14 C 0.512 3.488 15 O -0.519 6.519 16 N -0.590 5.590 17 C 0.074 3.926 18 C 0.217 3.783 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.265 1.265 27 C -0.095 4.095 28 C 0.042 3.958 29 N -0.349 5.349 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 44 H 0.170 0.830 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 17.902 15.873 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.171 4.171 3 C -0.121 4.121 4 N -0.190 5.190 5 C -0.041 4.041 6 C -0.009 4.009 7 C -0.113 4.113 8 C 0.359 3.641 9 O -0.389 6.389 10 O -0.233 6.233 11 C 0.014 3.986 12 H 0.128 0.872 13 C -0.233 4.233 14 C 0.297 3.703 15 O -0.394 6.394 16 N -0.324 5.324 17 C -0.069 4.069 18 C 0.097 3.903 19 C -0.571 4.571 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.115 4.115 28 C -0.079 4.079 29 N -0.021 5.021 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.201 0.799 34 H 0.186 0.814 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.188 0.812 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.489 18.268 15.440 25.381 hybrid contribution -0.825 -1.369 0.039 1.599 sum -9.315 16.899 15.479 24.738 Atomic orbital electron populations 1.20238 0.86141 1.03858 1.03026 1.21431 0.95052 0.85202 1.15421 1.22415 0.87696 0.98831 1.03109 1.70665 1.21984 1.05928 1.20457 1.20531 0.83525 0.90934 1.09110 1.20690 0.98706 0.89015 0.92467 1.18989 0.92558 0.91419 1.08380 1.20714 0.88002 0.82396 0.72963 1.90858 1.21472 1.80790 1.45764 1.86624 1.38058 1.15478 1.83151 1.22632 0.88372 0.88840 0.98751 0.87176 1.22424 1.03650 1.03633 0.93639 1.19744 0.85840 0.84003 0.80759 1.90700 1.20830 1.80045 1.47841 1.47719 1.11696 1.17218 1.55739 1.21932 0.84883 1.01905 0.98187 1.19727 0.96898 0.80571 0.93067 1.21311 1.42518 1.02901 0.90369 0.90711 1.24864 0.94939 0.98521 0.94676 1.69896 1.47823 1.32629 1.03005 0.86841 0.80342 0.83164 0.79273 1.19864 1.21007 1.19022 1.21061 0.90057 1.01390 0.98993 1.21484 1.01639 0.79807 1.04932 1.42769 1.08818 1.05941 1.44610 0.90631 0.89460 0.91392 0.79864 0.81399 0.90940 0.88732 0.91124 0.92843 0.90025 0.91885 0.94789 0.94349 0.92477 0.81212 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.30 36.01 0.37 0.03 16 2 C -0.06 -0.47 7.02 -81.54 -0.57 -1.05 16 3 C 0.03 0.32 11.75 -17.96 -0.21 0.11 16 4 N -0.47 -5.88 11.31 -12.80 -0.14 -6.03 16 5 C 0.20 2.42 7.79 -155.97 -1.22 1.20 16 6 C 0.01 0.14 9.70 -38.58 -0.37 -0.24 16 7 C -0.11 -1.28 5.90 -104.65 -0.62 -1.90 16 8 C 0.52 7.38 7.87 34.51 0.27 7.65 16 9 O -0.50 -7.85 15.62 -19.27 -0.30 -8.16 16 10 O -0.32 -4.98 8.71 -47.37 -0.41 -5.40 16 11 C 0.07 1.13 2.18 -27.88 -0.06 1.07 16 12 H 0.11 1.69 6.42 -51.93 -0.33 1.36 16 13 C -0.18 -2.07 9.19 37.16 0.34 -1.73 16 14 C 0.51 10.33 7.15 -10.98 -0.08 10.25 16 15 O -0.52 -12.63 16.08 -14.10 -0.23 -12.86 16 16 N -0.59 -11.73 2.86 -182.96 -0.52 -12.26 16 17 C 0.07 1.07 8.80 59.85 0.53 1.60 16 18 C 0.22 5.16 4.23 -5.20 -0.02 5.14 16 19 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 20 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 21 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 23 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 27 C -0.09 -0.95 9.56 -39.52 -0.38 -1.33 16 28 C 0.04 0.36 10.80 -16.68 -0.18 0.18 16 29 N -0.35 -3.56 2.94 -58.55 -0.17 -3.73 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.28 8.12 -51.92 -0.42 -0.15 16 33 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.17 1.86 7.67 -52.49 -0.40 1.46 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.96 4.54 -51.93 -0.24 0.73 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 39 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 41 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 42 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.17 1.60 7.66 -52.49 -0.40 1.19 16 45 H 0.17 0.87 8.04 -52.49 -0.42 0.45 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -37.32 381.82 -8.30 -45.62 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.74 Total: -0.38 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -2.64 Total: 7.57 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.07 Total: -48.62 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.94 Total: -26.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.32 -8.30 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848780535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.694 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds