Wall clock time and date at job start Wed Apr 1 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35474 * 126.38505 * 2 1 4 4 N 1.33164 * 108.61647 * 180.02562 * 3 2 1 5 5 C 1.32658 * 109.12664 * 0.02562 * 4 3 2 6 6 C 1.40624 * 132.14206 * 179.97438 * 5 4 3 7 7 C 1.38508 * 119.08539 * 179.97438 * 6 5 4 8 8 C 1.47509 * 120.38285 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99661 * 359.97438 * 8 7 6 10 10 O 1.34773 * 120.00524 * 179.97438 * 8 7 6 11 11 C 1.45195 * 117.00210 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47362 * 330.00304 * 11 10 8 13 13 C 1.53005 * 109.47195 * 89.99984 * 11 10 8 14 14 C 1.50698 * 109.46982 * 209.99802 * 11 10 8 15 15 O 1.21278 * 119.99933 * 0.02562 * 14 11 10 16 16 N 1.34781 * 119.99984 * 179.97438 * 14 11 10 17 17 C 1.46503 * 119.99904 * 359.97438 * 16 14 11 18 18 C 1.46494 * 119.99865 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46914 * 90.00380 * 18 16 14 20 20 H 1.07998 * 120.00229 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99907 * 180.02562 * 19 18 16 22 22 N 1.31518 * 120.00150 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00142 * 359.97438 * 21 19 18 24 24 H 1.48509 * 109.46891 * 90.00182 * 23 21 19 25 25 H 1.48496 * 109.47160 * 209.99921 * 23 21 19 26 26 H 1.48496 * 109.47112 * 330.00603 * 23 21 19 27 27 C 1.41830 * 119.24226 * 0.02562 * 7 6 5 28 28 C 1.34525 * 120.13906 * 359.97438 * 27 7 6 29 29 N 1.36410 * 126.38918 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47043 * 269.95189 * 1 2 3 31 31 H 1.08994 * 109.46953 * 29.96135 * 1 2 3 32 32 H 1.09008 * 109.46944 * 149.95769 * 1 2 3 33 33 H 1.07994 * 125.69071 * 0.04034 * 3 2 1 34 34 H 1.08001 * 120.46330 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47143 * 59.99752 * 13 11 10 36 36 H 1.09002 * 109.47350 * 180.02562 * 13 11 10 37 37 H 1.09008 * 109.46965 * 300.00009 * 13 11 10 38 38 H 1.09001 * 109.46728 * 90.00110 * 17 16 14 39 39 H 1.08998 * 109.47021 * 209.99916 * 17 16 14 40 40 H 1.08998 * 109.47150 * 330.00795 * 17 16 14 41 41 H 1.09003 * 109.47107 * 209.99549 * 18 16 14 42 42 H 1.08998 * 109.47699 * 330.00179 * 18 16 14 43 43 H 0.96999 * 120.00257 * 179.97438 * 22 21 19 44 44 H 1.07998 * 119.93233 * 180.27393 * 27 7 6 45 45 H 1.08000 * 119.51274 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3107 1.0906 0.0000 4 7 3.5788 0.6842 -0.0006 5 6 3.6103 -0.6420 -0.0015 6 6 4.6750 -1.5605 -0.0028 7 6 4.3942 -2.9168 -0.0030 8 6 5.4890 -3.9054 -0.0038 9 8 6.6451 -3.5315 -0.0048 10 8 5.2070 -5.2233 -0.0035 11 6 6.3342 -6.1386 -0.0038 12 1 7.1770 -5.6769 -0.5179 13 6 6.7307 -6.4599 1.4387 14 6 5.9481 -7.4106 -0.7138 15 8 4.8330 -7.5334 -1.1746 16 7 6.8424 -8.4113 -0.8375 17 6 8.1900 -8.2623 -0.2823 18 6 6.4673 -9.6476 -1.5282 19 6 6.7860 -9.5197 -2.9956 20 1 7.2237 -8.6085 -3.3757 21 6 6.5177 -10.5655 -3.8530 22 7 6.7963 -10.4541 -5.1335 23 14 5.7600 -12.1413 -3.1957 24 1 4.2794 -12.0403 -3.2537 25 1 6.2105 -13.2896 -4.0225 26 1 6.1873 -12.3466 -1.7885 27 6 3.0419 -3.3444 -0.0024 28 6 2.0472 -2.4387 -0.0011 29 7 2.3163 -1.0981 -0.0005 30 1 -0.3633 -0.0009 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5145 33 1 1.9783 2.1181 0.0006 34 1 5.6977 -1.2133 -0.0029 35 1 5.8878 -6.9216 1.9529 36 1 7.5771 -7.1466 1.4385 37 1 7.0098 -5.5398 1.9522 38 1 8.2013 -8.6240 0.7458 39 1 8.8948 -8.8413 -0.8790 40 1 8.4763 -7.2107 -0.3007 41 1 7.0261 -10.4832 -1.1067 42 1 5.3992 -9.8244 -1.4025 43 1 6.6079 -11.1901 -5.7367 44 1 2.8102 -4.3992 0.0019 45 1 1.0210 -2.7755 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848780535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:35 Heat of formation + Delta-G solvation = -36.066565 kcal Electronic energy + Delta-G solvation = -29390.107096 eV Core-core repulsion = 25181.174736 eV Total energy + Delta-G solvation = -4208.932360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.00766 -41.99834 -40.65757 -38.46493 -37.67806 -36.77717 -35.14231 -34.87470 -33.28233 -32.35733 -31.18598 -30.14099 -28.24846 -27.75496 -26.12331 -25.38071 -24.42188 -23.79434 -22.26512 -22.02451 -20.49487 -19.55783 -19.14852 -18.61255 -18.14417 -17.77550 -17.50422 -17.25108 -17.06202 -16.99194 -16.52466 -15.87930 -15.72367 -15.30960 -14.84713 -14.83335 -14.65356 -14.43665 -14.29114 -14.17699 -13.91909 -13.75421 -13.68848 -13.50277 -13.35308 -13.09064 -12.94308 -12.93252 -12.81997 -12.57536 -12.36261 -12.05944 -12.03885 -11.99462 -11.92556 -11.75340 -11.27810 -10.83825 -10.69803 -9.98679 -9.50641 -8.90176 -8.34441 -6.40875 -0.88646 -0.07187 1.02760 1.16624 1.34586 1.38576 1.43312 1.47133 1.55586 1.79017 2.24672 2.31424 2.34704 2.99879 3.07102 3.29926 3.33403 3.37630 3.58014 3.72385 3.82410 3.82829 3.99791 4.20098 4.30266 4.30997 4.42056 4.52509 4.61781 4.63147 4.70531 4.77601 4.78559 4.84040 4.87236 4.91315 4.98027 5.09308 5.10826 5.12818 5.30040 5.42925 5.50850 5.51399 5.89724 6.19762 6.37169 6.52679 6.61009 6.66121 7.13089 7.26934 8.82602 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002242 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.018444 B =12485.075645 C =13293.731558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.042 4.042 3 C 0.019 3.981 4 N -0.501 5.501 5 C 0.169 3.831 6 C 0.008 3.992 7 C -0.118 4.118 8 C 0.517 3.483 9 O -0.520 6.520 10 O -0.329 6.329 11 C 0.078 3.922 12 H 0.111 0.889 13 C -0.167 4.167 14 C 0.503 3.497 15 O -0.572 6.572 16 N -0.596 5.596 17 C 0.065 3.935 18 C 0.224 3.776 19 C -0.540 4.540 20 H 0.025 0.975 21 C 0.009 3.991 22 N -0.946 5.946 23 Si 0.951 3.049 24 H -0.276 1.276 25 H -0.277 1.277 26 H -0.232 1.232 27 C -0.108 4.108 28 C 0.057 3.943 29 N -0.355 5.355 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.214 0.786 34 H 0.164 0.836 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.024 0.976 43 H 0.269 0.731 44 H 0.174 0.826 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.531 17.756 18.421 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.158 4.158 3 C -0.135 4.135 4 N -0.222 5.222 5 C -0.070 4.070 6 C -0.013 4.013 7 C -0.125 4.125 8 C 0.362 3.638 9 O -0.410 6.410 10 O -0.245 6.245 11 C 0.020 3.980 12 H 0.129 0.871 13 C -0.223 4.223 14 C 0.290 3.710 15 O -0.452 6.452 16 N -0.328 5.328 17 C -0.077 4.077 18 C 0.103 3.897 19 C -0.579 4.579 20 H 0.044 0.956 21 C -0.189 4.189 22 N -0.586 5.586 23 Si 0.773 3.227 24 H -0.201 1.201 25 H -0.202 1.202 26 H -0.155 1.155 27 C -0.129 4.129 28 C -0.063 4.063 29 N -0.028 5.028 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.230 0.770 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.078 0.922 44 H 0.191 0.809 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.072 18.140 18.032 27.489 hybrid contribution -0.358 -1.113 -0.819 1.428 sum -10.430 17.027 17.213 26.362 Atomic orbital electron populations 1.20447 0.82918 1.05349 1.04441 1.22194 0.96782 0.84254 1.12534 1.23069 0.86839 1.00674 1.02901 1.70614 1.24009 1.06406 1.21143 1.20537 0.84476 0.91084 1.10942 1.20646 0.98814 0.89077 0.92720 1.18925 0.92865 0.90837 1.09882 1.21075 0.88427 0.82068 0.72195 1.90832 1.22362 1.80859 1.46957 1.86621 1.38318 1.16122 1.83392 1.22598 0.88042 0.86632 1.00754 0.87103 1.22433 1.04457 1.04880 0.90574 1.20549 0.85134 0.85187 0.80126 1.90659 1.23113 1.81264 1.50134 1.47792 1.13761 1.16116 1.55133 1.22304 0.81744 1.03585 1.00021 1.19440 0.96412 0.83276 0.90615 1.21557 1.41979 1.01101 0.93259 0.95648 1.25913 0.95355 1.02887 0.94763 1.70062 1.49559 1.34226 1.04791 0.85670 0.78794 0.77821 0.80387 1.20119 1.20197 1.15481 1.21107 0.89492 1.01997 1.00267 1.22005 1.02958 0.78895 1.02445 1.43013 1.08459 1.06868 1.44454 0.89063 0.87514 0.90386 0.76959 0.81853 0.90561 0.86678 0.89668 0.88514 0.90725 0.89823 0.92094 0.95766 0.92239 0.80859 0.77322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.30 71.24 0.73 0.34 16 2 C -0.04 -0.62 7.02 41.21 0.29 -0.33 16 3 C 0.02 0.32 11.75 83.85 0.99 1.30 16 4 N -0.50 -12.49 11.31 -194.42 -2.20 -14.69 16 5 C 0.17 4.13 7.79 133.96 1.04 5.17 16 6 C 0.01 0.19 9.70 22.92 0.22 0.41 16 7 C -0.12 -2.94 5.90 -19.88 -0.12 -3.06 16 8 C 0.52 15.23 7.87 70.27 0.55 15.79 16 9 O -0.52 -16.76 15.62 19.80 0.31 -16.45 16 10 O -0.33 -10.49 8.71 -50.45 -0.44 -10.93 16 11 C 0.08 2.41 2.18 29.85 0.07 2.48 16 12 H 0.11 3.40 6.42 -2.39 -0.02 3.39 16 13 C -0.17 -3.54 9.19 71.98 0.66 -2.88 16 14 C 0.50 20.50 7.15 87.66 0.63 21.13 16 15 O -0.57 -28.79 16.08 15.78 0.25 -28.53 16 16 N -0.60 -23.38 2.86 -851.13 -2.43 -25.81 16 17 C 0.06 1.73 8.80 127.77 1.12 2.85 16 18 C 0.22 10.55 4.23 85.64 0.36 10.91 16 19 C -0.54 -31.50 9.94 25.60 0.25 -31.25 16 20 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 21 C 0.01 0.51 5.47 84.65 0.46 0.98 16 22 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 23 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.23 -9.26 6.54 99.48 0.65 -8.61 16 27 C -0.11 -2.14 9.56 22.31 0.21 -1.93 16 28 C 0.06 0.87 10.80 83.08 0.90 1.77 16 29 N -0.35 -6.75 2.94 -339.15 -1.00 -7.75 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.08 0.31 8.12 -2.38 -0.02 0.29 16 33 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.16 3.96 7.67 -2.91 -0.02 3.93 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.93 4.54 -2.39 -0.01 1.92 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.10 1.79 6.95 -2.39 -0.02 1.77 16 39 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 40 H 0.08 1.88 6.01 -2.39 -0.01 1.87 16 41 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 42 H 0.02 1.22 6.85 -2.39 -0.02 1.20 16 43 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.17 3.25 7.66 -2.91 -0.02 3.23 16 45 H 0.21 1.42 8.04 -2.91 -0.02 1.40 16 Total: -1.00 -86.88 381.82 6.03 -80.85 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.97 Total: 13.82 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 8.38 Total: 23.69 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.33 Total: -107.74 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: 0.12 Total: -55.91 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -86.88 6.03 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848780535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.779 kcal (2) G-P(sol) polarization free energy of solvation -86.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds