Wall clock time and date at job start Wed Apr 1 2020 03:00:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.40466 * 119.77006 * 2 1
4 4 C 1.36597 * 118.31846 * 180.22186 * 3 2 1
5 5 C 1.50706 * 121.10036 * 179.77049 * 4 3 2
6 6 F 1.39900 * 109.46715 * 359.72279 * 5 4 3
7 7 F 1.39897 * 109.47068 * 119.72190 * 5 4 3
8 8 F 1.39895 * 109.47042 * 239.72499 * 5 4 3
9 9 C 1.41158 * 117.80646 * 359.50620 * 4 3 2
10 10 O 1.22062 * 120.34989 * 180.24939 * 9 4 3
11 11 N 1.34678 * 119.30151 * 0.26498 * 9 4 3
12 12 C 1.46494 * 119.16903 * 180.02562 * 11 9 4
13 13 N 1.46908 * 109.47039 * 105.00541 * 12 11 9
14 14 C 1.46854 * 110.99708 * 279.20757 * 13 12 11
15 15 C 1.53031 * 109.52116 * 174.16108 * 14 13 12
16 16 C 1.53113 * 109.28384 * 59.17731 * 15 14 13
17 17 C 1.53122 * 109.16236 * 302.35048 * 16 15 14
18 18 H 1.09002 * 109.49870 * 297.70888 * 17 16 15
19 19 C 1.50694 * 109.50730 * 177.59135 * 17 16 15
20 20 H 1.07997 * 120.00400 * 240.19266 * 19 17 16
21 21 C 1.37883 * 119.99679 * 60.18985 * 19 17 16
22 22 N 1.31502 * 120.00480 * 0.02562 * 21 19 17
23 23 Si 1.86809 * 119.99729 * 180.02562 * 21 19 17
24 24 H 1.48504 * 109.46823 * 60.00413 * 23 21 19
25 25 H 1.48491 * 109.47001 * 180.02562 * 23 21 19
26 26 H 1.48501 * 109.46928 * 300.00619 * 23 21 19
27 27 C 1.46843 * 111.00312 * 154.99939 * 13 12 11
28 28 N 1.28384 * 121.65483 * 359.97438 * 11 9 4
29 29 H 1.09003 * 109.47194 * 180.28853 * 1 2 3
30 30 H 1.09001 * 109.46923 * 300.28698 * 1 2 3
31 31 H 1.08994 * 109.47317 * 60.28666 * 1 2 3
32 32 H 1.08004 * 120.83965 * 0.02562 * 3 2 1
33 33 H 1.09000 * 109.47237 * 225.00193 * 12 11 9
34 34 H 1.09000 * 109.47829 * 345.00687 * 12 11 9
35 35 H 1.09001 * 109.46173 * 294.17623 * 14 13 12
36 36 H 1.09006 * 109.46078 * 54.14449 * 14 13 12
37 37 H 1.09003 * 109.50403 * 299.23719 * 15 14 13
38 38 H 1.09002 * 109.50547 * 179.12490 * 15 14 13
39 39 H 1.08993 * 109.53249 * 182.43908 * 16 15 14
40 40 H 1.09007 * 109.57071 * 62.27956 * 16 15 14
41 41 H 0.96998 * 120.00456 * 179.97438 * 22 21 19
42 42 H 1.09002 * 109.46186 * 305.85760 * 27 13 12
43 43 H 1.08999 * 109.46049 * 65.81886 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2044 1.2193 0.0000
4 6 3.5700 1.1847 -0.0047
5 6 4.3808 2.4550 -0.0101
6 9 3.5199 3.5577 -0.0158
7 9 5.1869 2.4986 1.1325
8 9 5.1883 2.4879 -1.1520
9 6 4.1966 -0.0802 0.0016
10 8 5.4143 -0.1652 0.0024
11 7 3.4369 -1.1922 0.0063
12 6 4.0903 -2.5033 0.0133
13 7 3.9864 -3.0950 1.3540
14 6 5.0097 -2.5451 2.2525
15 6 4.7812 -3.0721 3.6709
16 6 4.8535 -4.6015 3.6599
17 6 3.8108 -5.1469 2.6802
18 1 2.8131 -4.8643 3.0162
19 6 3.9151 -6.6490 2.6189
20 1 4.1418 -7.1368 1.6825
21 6 3.7212 -7.4006 3.7586
22 7 3.4448 -6.8067 4.8988
23 14 3.8513 -9.2626 3.6827
24 1 5.2120 -9.6455 3.2276
25 1 3.6016 -9.8315 5.0314
26 1 2.8433 -9.7907 2.7287
27 6 4.0673 -4.5598 1.2905
28 7 2.1544 -1.1320 0.0058
29 1 -0.3634 -1.0277 0.0052
30 1 -0.3633 0.5183 0.8874
31 1 -0.3633 0.5093 -0.8925
32 1 1.6744 2.1603 0.0004
33 1 3.6026 -3.1562 -0.7106
34 1 5.1410 -2.3872 -0.2521
35 1 5.9977 -2.8491 1.9068
36 1 4.9445 -1.4570 2.2544
37 1 3.7988 -2.7568 4.0225
38 1 5.5500 -2.6762 4.3345
39 1 4.6485 -4.9832 4.6600
40 1 5.8484 -4.9177 3.3462
41 1 3.3080 -7.3354 5.7004
42 1 3.3179 -4.9350 0.5936
43 1 5.0598 -4.8542 0.9494
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000853523416.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:59
Heat of formation + Delta-G solvation = -115.794837 kcal
Electronic energy + Delta-G solvation = -31392.160534 eV
Core-core repulsion = 26637.914156 eV
Total energy + Delta-G solvation = -4754.246377 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.141 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-50.35576 -47.92040 -47.74486 -42.36354 -38.44127 -38.08422 -35.77375 -33.54761
-32.83577 -31.69388 -30.01229 -28.92186 -27.01826 -26.36366 -25.02193 -23.82349
-22.91895 -22.06772 -21.39512 -19.45672 -18.77900 -18.68495 -18.58401 -17.68921
-17.03394 -16.94492 -16.64700 -16.13070 -14.99578 -14.72875 -14.66690 -14.52387
-14.42069 -14.32533 -14.23749 -13.98322 -13.93871 -13.92493 -13.65287 -13.44603
-13.00285 -12.83512 -12.68352 -12.59103 -12.48261 -12.28420 -12.00362 -11.59653
-11.44459 -10.97697 -10.97046 -10.78883 -10.74751 -10.20262 -10.05751 -9.90574
-9.56783 -9.24437 -8.80422 -8.75887 -8.36989 -8.00278 -6.02255 -4.09165
-0.10010 1.29174 1.85100 2.41134 2.90272 3.29564 3.34764 3.36645
3.36878 3.47435 3.98242 4.15847 4.17391 4.21436 4.43457 4.45657
4.70517 4.98809 5.11459 5.21649 5.25672 5.27988 5.28700 5.47618
5.59685 5.65125 5.74011 5.87547 5.99168 6.13241 6.21657 6.39268
6.60689 6.64301 6.79562 7.09519 7.18689 7.29859 7.41933 7.54540
7.70485 7.93118 7.99281 8.09946 8.39568 8.94154 9.55506 11.03747
Molecular weight = 345.14amu
Principal moments of inertia in cm(-1)
A = 0.020020 B = 0.002761 C = 0.002616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1398.285234 B =10140.010117 C =10700.999547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C 0.026 3.974
3 C 0.017 3.983
4 C -0.283 4.283
5 C 0.537 3.463
6 F -0.176 7.176
7 F -0.166 7.166
8 F -0.168 7.168
9 C 0.501 3.499
10 O -0.514 6.514
11 N -0.318 5.318
12 C 0.269 3.731
13 N -0.544 5.544
14 C 0.064 3.936
15 C -0.116 4.116
16 C -0.111 4.111
17 C 0.058 3.942
18 H 0.036 0.964
19 C -0.518 4.518
20 H 0.054 0.946
21 C 0.065 3.935
22 N -0.887 5.887
23 Si 0.892 3.108
24 H -0.278 1.278
25 H -0.287 1.287
26 H -0.277 1.277
27 C 0.073 3.927
28 N -0.157 5.157
29 H 0.087 0.913
30 H 0.083 0.917
31 H 0.081 0.919
32 H 0.164 0.836
33 H 0.110 0.890
34 H 0.093 0.907
35 H 0.034 0.966
36 H 0.052 0.948
37 H 0.059 0.941
38 H 0.049 0.951
39 H 0.092 0.908
40 H 0.032 0.968
41 H 0.261 0.739
42 H 0.067 0.933
43 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.081 18.352 -10.832 21.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.141 4.141
3 C -0.008 4.008
4 C -0.296 4.296
5 C 0.482 3.518
6 F -0.158 7.158
7 F -0.147 7.147
8 F -0.149 7.149
9 C 0.297 3.703
10 O -0.391 6.391
11 N -0.139 5.139
12 C 0.060 3.940
13 N -0.270 5.270
14 C -0.064 4.064
15 C -0.153 4.153
16 C -0.149 4.149
17 C 0.039 3.961
18 H 0.054 0.946
19 C -0.556 4.556
20 H 0.072 0.928
21 C -0.137 4.137
22 N -0.526 5.526
23 Si 0.720 3.280
24 H -0.203 1.203
25 H -0.213 1.213
26 H -0.203 1.203
27 C -0.053 4.053
28 N 0.016 4.984
29 H 0.105 0.895
30 H 0.102 0.898
31 H 0.100 0.900
32 H 0.182 0.818
33 H 0.128 0.872
34 H 0.111 0.889
35 H 0.052 0.948
36 H 0.071 0.929
37 H 0.078 0.922
38 H 0.068 0.932
39 H 0.111 0.889
40 H 0.051 0.949
41 H 0.071 0.929
42 H 0.085 0.915
43 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -4.863 17.412 -10.439 20.876
hybrid contribution 1.235 -0.070 -0.203 1.253
sum -3.628 17.343 -10.642 20.668
Atomic orbital electron populations
1.20541 0.85432 1.05120 1.03238 1.21914 0.98567 0.86622 1.07038
1.22357 0.92535 1.01245 0.84639 1.21394 0.95536 0.94207 1.18513
1.17344 0.77678 0.82211 0.74538 1.93166 1.70088 1.56160 1.96357
1.93254 1.74399 1.96571 1.50521 1.93236 1.74396 1.96611 1.50692
1.17144 0.88496 0.84594 0.80081 1.91051 1.11525 1.86233 1.50288
1.47135 1.01814 1.09938 1.54992 1.22512 0.97258 0.79707 0.94531
1.61679 1.49733 1.08885 1.06692 1.22116 0.92112 0.97681 0.94488
1.21672 1.00740 0.99493 0.93441 1.21678 0.98531 0.90236 1.04493
1.18660 0.95883 0.93859 0.87713 0.94588 1.21060 1.48663 0.90973
0.94943 0.92750 1.24925 0.94948 0.98379 0.95467 1.69870 1.47954
1.35244 0.99490 0.86668 0.78550 0.85727 0.77090 1.20345 1.21313
1.20262 1.22364 0.99023 0.81398 1.02478 1.70952 0.95153 1.28433
1.03819 0.89450 0.89821 0.90025 0.81808 0.87156 0.88899 0.94812
0.92920 0.92227 0.93228 0.88927 0.94903 0.92915 0.91500 0.95378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.49 10.17 36.00 0.37 -0.12 16
2 C 0.03 0.25 6.88 -82.36 -0.57 -0.31 16
3 C 0.02 0.15 9.26 -39.34 -0.36 -0.21 16
4 C -0.28 -3.47 5.41 -104.10 -0.56 -4.03 16
5 C 0.54 6.57 3.05 36.01 0.11 6.68 16
6 F -0.18 -1.74 16.10 2.25 0.04 -1.70 16
7 F -0.17 -2.33 17.08 2.25 0.04 -2.29 16
8 F -0.17 -2.23 17.08 2.25 0.04 -2.19 16
9 C 0.50 7.60 6.78 -15.20 -0.10 7.50 16
10 O -0.51 -9.19 15.37 4.86 0.07 -9.12 16
11 N -0.32 -4.62 3.37 -66.35 -0.22 -4.84 16
12 C 0.27 4.06 5.59 -63.31 -0.35 3.71 16
13 N -0.54 -9.78 4.75 -238.57 -1.13 -10.91 16
14 C 0.06 1.18 5.31 -3.83 -0.02 1.16 16
15 C -0.12 -2.30 6.09 -26.66 -0.16 -2.47 16
16 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16
17 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16
18 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16
19 C -0.52 -13.68 8.56 -34.44 -0.29 -13.98 16
20 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16
21 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16
22 N -0.89 -24.79 11.36 55.43 0.63 -24.16 16
23 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16
24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
27 C 0.07 1.46 4.62 -3.84 -0.02 1.44 16
28 N -0.16 -2.03 10.79 33.72 0.36 -1.66 16
29 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16
30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16
31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16
32 H 0.16 0.82 7.28 -52.48 -0.38 0.44 16
33 H 0.11 1.45 7.71 -51.93 -0.40 1.05 16
34 H 0.09 1.42 6.76 -51.93 -0.35 1.07 16
35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.05 0.98 7.13 -51.93 -0.37 0.61 16
37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
39 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16
40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16
42 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16
43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
LS Contribution 363.33 15.07 5.48 5.48
Total: -1.00 -30.50 363.33 -7.71 -38.21
By element:
Atomic # 1 Polarization: 3.54 SS G_CDS: -5.58 Total: -2.04 kcal
Atomic # 6 Polarization: 1.87 SS G_CDS: -2.41 Total: -0.54 kcal
Atomic # 7 Polarization: -41.21 SS G_CDS: -0.36 Total: -41.57 kcal
Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal
Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -30.50 -7.71 -38.21 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000853523416.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.586 kcal
(2) G-P(sol) polarization free energy of solvation -30.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds