Wall clock time and date at job start Wed Apr 1 2020 03:00:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.40466 * 119.77006 * 2 1
4 4 C 1.36597 * 118.31846 * 180.22186 * 3 2 1
5 5 C 1.50706 * 121.10036 * 179.77049 * 4 3 2
6 6 F 1.39900 * 109.46715 * 359.72279 * 5 4 3
7 7 F 1.39897 * 109.47068 * 119.72190 * 5 4 3
8 8 F 1.39895 * 109.47042 * 239.72499 * 5 4 3
9 9 C 1.41158 * 117.80646 * 359.50620 * 4 3 2
10 10 O 1.22062 * 120.34989 * 180.24939 * 9 4 3
11 11 N 1.34678 * 119.30151 * 0.26498 * 9 4 3
12 12 C 1.46494 * 119.16903 * 180.02562 * 11 9 4
13 13 N 1.46908 * 109.47039 * 105.00541 * 12 11 9
14 14 C 1.46854 * 110.99708 * 279.20757 * 13 12 11
15 15 C 1.53031 * 109.52116 * 174.16108 * 14 13 12
16 16 C 1.53113 * 109.28384 * 59.17731 * 15 14 13
17 17 C 1.53122 * 109.16236 * 302.35048 * 16 15 14
18 18 H 1.09002 * 109.49870 * 297.70888 * 17 16 15
19 19 C 1.50694 * 109.50730 * 177.59135 * 17 16 15
20 20 H 1.07997 * 120.00400 * 240.19266 * 19 17 16
21 21 C 1.37883 * 119.99679 * 60.18985 * 19 17 16
22 22 N 1.31502 * 120.00480 * 0.02562 * 21 19 17
23 23 Si 1.86809 * 119.99729 * 180.02562 * 21 19 17
24 24 H 1.48504 * 109.46823 * 60.00413 * 23 21 19
25 25 H 1.48491 * 109.47001 * 180.02562 * 23 21 19
26 26 H 1.48501 * 109.46928 * 300.00619 * 23 21 19
27 27 C 1.46843 * 111.00312 * 154.99939 * 13 12 11
28 28 N 1.28384 * 121.65483 * 359.97438 * 11 9 4
29 29 H 1.09003 * 109.47194 * 180.28853 * 1 2 3
30 30 H 1.09001 * 109.46923 * 300.28698 * 1 2 3
31 31 H 1.08994 * 109.47317 * 60.28666 * 1 2 3
32 32 H 1.08004 * 120.83965 * 0.02562 * 3 2 1
33 33 H 1.09000 * 109.47237 * 225.00193 * 12 11 9
34 34 H 1.09000 * 109.47829 * 345.00687 * 12 11 9
35 35 H 1.09001 * 109.46173 * 294.17623 * 14 13 12
36 36 H 1.09006 * 109.46078 * 54.14449 * 14 13 12
37 37 H 1.09003 * 109.50403 * 299.23719 * 15 14 13
38 38 H 1.09002 * 109.50547 * 179.12490 * 15 14 13
39 39 H 1.08993 * 109.53249 * 182.43908 * 16 15 14
40 40 H 1.09007 * 109.57071 * 62.27956 * 16 15 14
41 41 H 0.96998 * 120.00456 * 179.97438 * 22 21 19
42 42 H 1.09002 * 109.46186 * 305.85760 * 27 13 12
43 43 H 1.08999 * 109.46049 * 65.81886 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2044 1.2193 0.0000
4 6 3.5700 1.1847 -0.0047
5 6 4.3808 2.4550 -0.0101
6 9 3.5199 3.5577 -0.0158
7 9 5.1869 2.4986 1.1325
8 9 5.1883 2.4879 -1.1520
9 6 4.1966 -0.0802 0.0016
10 8 5.4143 -0.1652 0.0024
11 7 3.4369 -1.1922 0.0063
12 6 4.0903 -2.5033 0.0133
13 7 3.9864 -3.0950 1.3540
14 6 5.0097 -2.5451 2.2525
15 6 4.7812 -3.0721 3.6709
16 6 4.8535 -4.6015 3.6599
17 6 3.8108 -5.1469 2.6802
18 1 2.8131 -4.8643 3.0162
19 6 3.9151 -6.6490 2.6189
20 1 4.1418 -7.1368 1.6825
21 6 3.7212 -7.4006 3.7586
22 7 3.4448 -6.8067 4.8988
23 14 3.8513 -9.2626 3.6827
24 1 5.2120 -9.6455 3.2276
25 1 3.6016 -9.8315 5.0314
26 1 2.8433 -9.7907 2.7287
27 6 4.0673 -4.5598 1.2905
28 7 2.1544 -1.1320 0.0058
29 1 -0.3634 -1.0277 0.0052
30 1 -0.3633 0.5183 0.8874
31 1 -0.3633 0.5093 -0.8925
32 1 1.6744 2.1603 0.0004
33 1 3.6026 -3.1562 -0.7106
34 1 5.1410 -2.3872 -0.2521
35 1 5.9977 -2.8491 1.9068
36 1 4.9445 -1.4570 2.2544
37 1 3.7988 -2.7568 4.0225
38 1 5.5500 -2.6762 4.3345
39 1 4.6485 -4.9832 4.6600
40 1 5.8484 -4.9177 3.3462
41 1 3.3080 -7.3354 5.7004
42 1 3.3179 -4.9350 0.5936
43 1 5.0598 -4.8542 0.9494
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000853523416.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:58
Heat of formation + Delta-G solvation = -134.668375 kcal
Electronic energy + Delta-G solvation = -31392.978952 eV
Core-core repulsion = 26637.914156 eV
Total energy + Delta-G solvation = -4755.064795 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.141 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-51.29384 -48.81596 -48.74910 -43.34655 -39.91916 -39.20532 -36.88750 -35.25326
-33.79927 -33.28135 -31.79083 -29.89620 -27.91708 -27.42767 -26.96549 -25.01276
-23.82672 -23.59393 -23.00720 -20.55980 -20.35975 -19.65588 -19.54990 -18.65622
-18.56734 -17.94926 -17.84743 -17.56390 -16.61650 -16.18051 -15.86339 -15.61656
-15.60136 -15.26208 -15.19908 -15.16773 -14.91706 -14.87608 -14.80105 -14.76422
-14.47684 -14.24954 -14.07799 -13.63670 -13.55342 -13.40016 -13.18225 -12.87110
-12.80353 -12.64245 -12.56317 -12.44298 -11.95926 -11.83351 -11.79318 -11.47494
-11.09621 -10.96307 -10.72661 -10.39683 -9.82093 -9.46331 -8.07492 -6.21486
-0.96539 0.37646 0.84318 1.44299 1.45008 1.47660 1.52474 1.94542
2.43522 2.45494 2.58221 2.82823 3.11415 3.20432 3.22466 3.42709
3.71065 3.79345 3.92455 3.97051 4.08872 4.14131 4.29930 4.35342
4.44377 4.50662 4.57115 4.75291 4.79352 4.87544 4.94608 4.94745
5.02581 5.07712 5.27203 5.41814 5.43029 5.63035 5.80544 5.93962
6.02739 6.13138 6.25096 6.39600 6.90159 7.00304 7.46655 8.97299
Molecular weight = 345.14amu
Principal moments of inertia in cm(-1)
A = 0.020020 B = 0.002761 C = 0.002616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1398.285234 B =10140.010117 C =10700.999547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C 0.048 3.952
3 C 0.048 3.952
4 C -0.303 4.303
5 C 0.540 3.460
6 F -0.159 7.159
7 F -0.181 7.181
8 F -0.178 7.178
9 C 0.490 3.510
10 O -0.557 6.557
11 N -0.328 5.328
12 C 0.275 3.725
13 N -0.550 5.550
14 C 0.075 3.925
15 C -0.106 4.106
16 C -0.103 4.103
17 C 0.057 3.943
18 H 0.000 1.000
19 C -0.535 4.535
20 H 0.057 0.943
21 C 0.015 3.985
22 N -0.916 5.916
23 Si 0.954 3.046
24 H -0.273 1.273
25 H -0.287 1.287
26 H -0.269 1.269
27 C 0.087 3.913
28 N -0.196 5.196
29 H 0.077 0.923
30 H 0.106 0.894
31 H 0.115 0.885
32 H 0.212 0.788
33 H 0.128 0.872
34 H 0.088 0.912
35 H 0.032 0.968
36 H 0.054 0.946
37 H 0.049 0.951
38 H 0.065 0.935
39 H 0.061 0.939
40 H 0.026 0.974
41 H 0.260 0.740
42 H 0.076 0.924
43 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.855 19.697 -12.128 24.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.121 4.121
3 C 0.023 3.977
4 C -0.316 4.316
5 C 0.485 3.515
6 F -0.140 7.140
7 F -0.162 7.162
8 F -0.159 7.159
9 C 0.288 3.712
10 O -0.438 6.438
11 N -0.147 5.147
12 C 0.065 3.935
13 N -0.276 5.276
14 C -0.053 4.053
15 C -0.144 4.144
16 C -0.141 4.141
17 C 0.038 3.962
18 H 0.019 0.981
19 C -0.573 4.573
20 H 0.076 0.924
21 C -0.184 4.184
22 N -0.555 5.555
23 Si 0.780 3.220
24 H -0.198 1.198
25 H -0.213 1.213
26 H -0.194 1.194
27 C -0.039 4.039
28 N -0.021 5.021
29 H 0.096 0.904
30 H 0.125 0.875
31 H 0.133 0.867
32 H 0.229 0.771
33 H 0.146 0.854
34 H 0.106 0.894
35 H 0.051 0.949
36 H 0.073 0.927
37 H 0.068 0.932
38 H 0.084 0.916
39 H 0.079 0.921
40 H 0.045 0.955
41 H 0.069 0.931
42 H 0.095 0.905
43 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -6.662 18.762 -11.756 23.122
hybrid contribution 1.616 -0.358 0.184 1.665
sum -5.046 18.404 -11.572 22.318
Atomic orbital electron populations
1.20801 0.82259 1.05449 1.05898 1.22787 1.00283 0.86000 1.03049
1.22873 0.91096 1.02915 0.80820 1.21359 0.96894 0.92871 1.20520
1.17322 0.77581 0.82794 0.73799 1.93194 1.69306 1.55247 1.96239
1.93223 1.74984 1.96687 1.51315 1.93215 1.74833 1.96703 1.51141
1.17569 0.88229 0.85680 0.79696 1.91015 1.13124 1.86826 1.52787
1.46863 1.02465 1.09170 1.56200 1.22424 0.97631 0.80505 0.92904
1.61570 1.49653 1.07759 1.08582 1.21945 0.92244 0.97557 0.93564
1.21550 1.00741 0.97079 0.95062 1.21480 0.97747 0.92483 1.02419
1.18557 0.94071 0.93313 0.90288 0.98136 1.21456 1.48323 0.92457
0.95093 0.92437 1.25706 0.94749 1.02740 0.95194 1.70020 1.48808
1.36679 0.99983 0.85675 0.78740 0.80529 0.77068 1.19805 1.21270
1.19430 1.22039 0.99322 0.82696 0.99873 1.71016 0.94282 1.30312
1.06497 0.90396 0.87522 0.86665 0.77094 0.85385 0.89403 0.94940
0.92738 0.93227 0.91622 0.92073 0.95547 0.93093 0.90514 0.95236
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.61 10.17 71.24 0.72 0.11 16
2 C 0.05 0.75 6.88 43.31 0.30 1.05 16
3 C 0.05 0.66 9.26 22.43 0.21 0.86 16
4 C -0.30 -6.89 5.41 -19.53 -0.11 -7.00 16
5 C 0.54 12.42 3.05 71.24 0.22 12.64 16
6 F -0.16 -2.66 16.10 44.97 0.72 -1.93 16
7 F -0.18 -4.98 17.08 44.97 0.77 -4.22 16
8 F -0.18 -4.61 17.08 44.97 0.77 -3.84 16
9 C 0.49 14.70 6.78 84.97 0.58 15.28 16
10 O -0.56 -20.32 15.37 -5.52 -0.08 -20.41 16
11 N -0.33 -9.32 3.37 -481.96 -1.62 -10.94 16
12 C 0.27 8.25 5.59 170.81 0.96 9.21 16
13 N -0.55 -19.83 4.75 -908.71 -4.32 -24.15 16
14 C 0.07 2.79 5.31 86.32 0.46 3.25 16
15 C -0.11 -4.32 6.09 30.64 0.19 -4.14 16
16 C -0.10 -4.95 5.03 30.67 0.15 -4.80 16
17 C 0.06 2.80 2.26 -11.49 -0.03 2.78 16
18 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16
19 C -0.53 -28.71 8.56 25.60 0.22 -28.50 16
20 H 0.06 2.98 7.74 -2.91 -0.02 2.95 16
21 C 0.02 0.82 5.30 84.66 0.45 1.27 16
22 N -0.92 -52.53 11.36 21.45 0.24 -52.29 16
23 Si 0.95 42.90 29.54 68.60 2.03 44.92 16
24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
25 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16
26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
27 C 0.09 3.50 4.62 86.32 0.40 3.89 16
28 N -0.20 -4.75 10.79 -47.22 -0.51 -5.26 16
29 H 0.08 0.79 8.11 -2.39 -0.02 0.77 16
30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16
31 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16
32 H 0.21 0.84 7.28 -2.91 -0.02 0.82 16
33 H 0.13 3.29 7.71 -2.39 -0.02 3.27 16
34 H 0.09 2.72 6.76 -2.39 -0.02 2.71 16
35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.05 2.03 7.13 -2.38 -0.02 2.02 16
37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
39 H 0.06 3.32 6.16 -2.39 -0.01 3.31 16
40 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16
41 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16
42 H 0.08 2.89 7.91 -2.39 -0.02 2.87 16
43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
Total: -1.00 -69.49 363.33 3.75 -65.74
By element:
Atomic # 1 Polarization: 5.41 SS G_CDS: 1.05 Total: 6.46 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: 4.71 Total: 5.91 kcal
Atomic # 7 Polarization: -86.43 SS G_CDS: -6.21 Total: -92.64 kcal
Atomic # 8 Polarization: -20.32 SS G_CDS: -0.08 Total: -20.41 kcal
Atomic # 9 Polarization: -12.25 SS G_CDS: 2.26 Total: -9.99 kcal
Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal
Total: -69.49 3.75 -65.74 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000853523416.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.930 kcal
(2) G-P(sol) polarization free energy of solvation -69.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.421 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds