Wall clock time and date at job start Wed Apr 1 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99833 * 2 1 4 4 O 1.20823 * 120.00159 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99849 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46955 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.46913 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99916 * 265.56375 * 7 6 5 9 9 H 1.07999 * 120.00219 * 145.67698 * 8 7 6 10 10 C 1.38948 * 120.00120 * 325.67463 * 8 7 6 11 11 N 1.31417 * 119.99862 * 338.40514 * 10 8 7 12 12 Si 1.86800 * 120.00394 * 158.40426 * 10 8 7 13 13 H 1.48506 * 109.46976 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47005 * 119.99690 * 12 10 8 15 15 H 1.48494 * 109.47326 * 240.00150 * 12 10 8 16 16 C 1.34778 * 120.00247 * 85.56117 * 7 6 5 17 17 O 1.21297 * 119.99917 * 0.02562 * 16 7 6 18 18 C 1.50704 * 119.99921 * 179.97438 * 16 7 6 19 19 C 1.50699 * 109.46961 * 180.02562 * 18 16 7 20 20 C 1.35112 * 125.68866 * 125.58167 * 19 18 16 21 21 N 1.36831 * 107.17914 * 180.02562 * 20 19 18 22 22 C 1.36488 * 132.57076 * 179.35276 * 21 20 19 23 23 C 1.34945 * 120.61202 * 179.97438 * 22 21 20 24 24 C 1.40467 * 120.30041 * 0.02562 * 23 22 21 25 25 C 1.36028 * 119.69704 * 359.97438 * 24 23 22 26 26 C 1.50697 * 120.33709 * 179.97438 * 25 24 23 27 27 C 1.37081 * 107.00216 * 359.59497 * 21 20 19 28 28 N 1.32558 * 108.03285 * 0.10973 * 27 21 20 29 29 H 1.09000 * 109.47502 * 299.99716 * 1 2 3 30 30 H 1.08995 * 109.47124 * 60.00582 * 1 2 3 31 31 H 1.09001 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46870 * 60.00352 * 5 3 2 33 33 H 1.08995 * 109.46715 * 300.00108 * 5 3 2 34 34 H 1.08998 * 109.47158 * 60.00388 * 6 5 3 35 35 H 1.09004 * 109.47144 * 300.00136 * 6 5 3 36 36 H 0.97002 * 119.99904 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47179 * 60.00902 * 18 16 7 38 38 H 1.08995 * 109.47433 * 300.00094 * 18 16 7 39 39 H 1.08005 * 126.40478 * 359.39996 * 20 19 18 40 40 H 1.08006 * 119.68999 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.84857 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.15442 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.46529 * 90.00549 * 26 25 24 44 44 H 1.08997 * 109.47074 * 330.00307 * 26 25 24 45 45 H 1.08997 * 109.46832 * 210.00123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1429 2.9459 1.1848 9 1 7.1077 2.4762 1.3066 10 6 5.5905 3.6791 2.2279 11 7 4.6672 4.5809 1.9804 12 14 6.1602 3.3829 3.9821 13 1 7.2009 2.3235 3.9923 14 1 6.7271 4.6383 4.5370 15 1 5.0062 2.9518 4.8112 16 6 6.1407 2.7642 -1.1627 17 8 5.5393 2.6521 -2.2101 18 6 7.6457 2.8437 -1.1627 19 6 8.1530 2.7612 -2.5793 20 6 8.9718 3.6547 -3.1766 21 7 9.1891 3.2132 -4.4534 22 6 9.9148 3.7172 -5.4937 23 6 9.9638 3.0679 -6.6756 24 6 9.2658 1.8616 -6.8510 25 6 8.5386 1.3481 -5.8225 26 6 7.7837 0.0553 -5.9950 27 6 8.4930 2.0409 -4.5961 28 7 7.8777 1.7869 -3.4498 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7806 -0.8892 33 1 3.9556 0.7809 0.8908 34 1 3.6101 3.2359 0.8911 35 1 3.6107 3.2364 -0.8889 36 1 4.2814 5.0925 2.7086 37 1 8.0532 2.0163 -0.5818 38 1 7.9597 3.7885 -0.7192 39 1 9.3710 4.5548 -2.7328 40 1 10.4549 4.6442 -5.3696 41 1 10.5423 3.4776 -7.4904 42 1 9.3069 1.3437 -7.7979 43 1 8.4256 -0.7802 -5.7155 44 1 7.4803 -0.0521 -7.0363 45 1 6.8994 0.0631 -5.3578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:29 Heat of formation + Delta-G solvation = -26.504015 kcal Electronic energy + Delta-G solvation = -29794.133540 eV Core-core repulsion = 25585.615844 eV Total energy + Delta-G solvation = -4208.517696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.52354 -39.98019 -38.56062 -37.32927 -36.09992 -34.85075 -34.31882 -32.01569 -31.62573 -30.65589 -29.78433 -27.72578 -27.15579 -26.74407 -24.99293 -23.39550 -22.57798 -21.90465 -20.58406 -19.94952 -18.98592 -17.53125 -17.22858 -16.79133 -16.43194 -16.18825 -16.04380 -15.88618 -15.45515 -15.37089 -14.53972 -14.17019 -14.15328 -14.00613 -13.67574 -13.49124 -13.22766 -13.05484 -12.65264 -12.51313 -12.29577 -12.12470 -11.99940 -11.79103 -11.61746 -11.59440 -11.56352 -11.22981 -11.12385 -10.79913 -10.65959 -10.48199 -10.42498 -10.36957 -10.00627 -9.92272 -9.59336 -9.12215 -8.51127 -8.22211 -7.55773 -7.55159 -6.36902 -4.06303 0.85454 1.46646 2.74283 2.80785 3.09166 3.12357 3.16915 3.23024 3.25741 3.73106 3.97648 4.12471 4.39466 4.50798 4.77033 4.82106 4.88459 5.00964 5.09116 5.28865 5.35531 5.38116 5.41438 5.52402 5.60400 5.68232 5.69960 5.71076 5.92364 5.95608 6.01386 6.02793 6.14575 6.30639 6.33793 6.37148 6.41822 6.44797 6.66978 6.80124 6.92538 7.04691 7.33678 7.36209 7.51606 7.90328 8.25153 8.30876 8.37705 9.08707 9.53644 9.97331 10.64077 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.003233 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.594545 B = 8657.278921 C =10904.531007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.125 4.125 6 C 0.130 3.870 7 N -0.444 5.444 8 C -0.345 4.345 9 H 0.093 0.907 10 C 0.043 3.957 11 N -0.853 5.853 12 Si 0.910 3.090 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.480 3.520 17 O -0.583 6.583 18 C -0.045 4.045 19 C 0.099 3.901 20 C -0.102 4.102 21 N -0.364 5.364 22 C 0.050 3.950 23 C -0.147 4.147 24 C -0.126 4.126 25 C -0.035 4.035 26 C -0.105 4.105 27 C 0.213 3.787 28 N -0.452 5.452 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.270 0.730 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.181 0.819 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -5.447 -10.270 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.164 4.164 6 C 0.005 3.995 7 N -0.164 5.164 8 C -0.472 4.472 9 H 0.111 0.889 10 C -0.163 4.163 11 N -0.489 5.489 12 Si 0.737 3.263 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.268 3.732 17 O -0.466 6.466 18 C -0.086 4.086 19 C -0.035 4.035 20 C -0.233 4.233 21 N -0.036 5.036 22 C -0.073 4.073 23 C -0.168 4.168 24 C -0.149 4.149 25 C -0.037 4.037 26 C -0.162 4.162 27 C -0.030 4.030 28 N -0.171 5.171 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.198 0.802 40 H 0.175 0.825 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.950 -5.665 -10.447 13.290 hybrid contribution 0.568 0.914 0.883 1.392 sum 6.518 -4.751 -9.563 12.511 Atomic orbital electron populations 1.23155 0.77506 1.02961 1.02282 1.86545 1.22646 1.34501 1.84683 1.24129 0.92453 0.80836 0.71638 1.90643 1.67289 1.36235 1.45138 1.21928 0.85662 1.03593 1.05202 1.21151 0.82259 0.90741 1.05309 1.43387 1.04359 1.63652 1.04984 1.19487 1.05463 1.32295 0.90002 0.88902 1.25355 0.96958 0.93639 1.00389 1.69942 1.27370 1.18680 1.32875 0.86144 0.78889 0.78533 0.82770 1.19033 1.20739 1.20558 1.20129 0.88783 0.80519 0.83761 1.90586 1.70178 1.54243 1.31604 1.19848 0.95157 1.04543 0.89058 1.20551 0.95310 0.91202 0.96437 1.22394 1.11538 1.05304 0.84027 1.42766 1.32031 1.18872 1.09930 1.21502 0.98035 1.00447 0.87291 1.20643 1.02884 0.96788 0.96520 1.20799 0.98620 0.96507 0.98999 1.19013 0.98350 0.97197 0.89177 1.20663 1.00448 0.92620 1.02484 1.20859 0.97870 0.87653 0.96644 1.70674 1.21207 1.26836 0.98396 0.92214 0.92224 0.88675 0.88285 0.87897 0.86477 0.92041 0.91956 0.88463 0.87850 0.80192 0.82536 0.83764 0.84619 0.90775 0.91280 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.30 10.57 -39.24 -0.41 -6.72 16 3 C 0.47 9.41 7.96 36.01 0.29 9.70 16 4 O -0.51 -11.47 15.73 -18.75 -0.29 -11.77 16 5 C -0.12 -2.61 6.11 -27.88 -0.17 -2.78 16 6 C 0.13 3.19 4.21 -4.04 -0.02 3.17 16 7 N -0.44 -10.99 2.55 -114.81 -0.29 -11.28 16 8 C -0.34 -8.35 8.70 -14.93 -0.13 -8.48 16 9 H 0.09 2.10 6.98 -52.49 -0.37 1.73 16 10 C 0.04 1.06 4.94 -17.47 -0.09 0.97 16 11 N -0.85 -22.39 11.31 55.50 0.63 -21.76 16 12 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.48 11.69 7.60 -10.98 -0.08 11.61 16 17 O -0.58 -15.81 15.21 5.54 0.08 -15.72 16 18 C -0.05 -0.91 4.92 -29.03 -0.14 -1.05 16 19 C 0.10 1.95 5.85 -82.97 -0.49 1.46 16 20 C -0.10 -1.69 11.63 -16.43 -0.19 -1.88 16 21 N -0.36 -5.70 2.94 -62.66 -0.18 -5.88 16 22 C 0.05 0.56 10.95 -16.65 -0.18 0.38 16 23 C -0.15 -1.42 9.98 -39.91 -0.40 -1.82 16 24 C -0.13 -1.35 9.72 -39.54 -0.38 -1.74 16 25 C -0.03 -0.49 5.90 -104.40 -0.62 -1.11 16 26 C -0.11 -1.27 10.03 36.00 0.36 -0.91 16 27 C 0.21 3.78 7.52 -156.04 -1.17 2.61 16 28 N -0.45 -9.41 10.66 -9.00 -0.10 -9.51 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 34 H 0.12 3.11 5.30 -51.93 -0.28 2.83 16 35 H 0.06 1.64 7.52 -51.93 -0.39 1.25 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 37 H 0.10 1.82 7.65 -51.93 -0.40 1.42 16 38 H 0.10 1.91 8.06 -51.93 -0.42 1.50 16 39 H 0.18 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 45 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -34.35 387.51 -8.16 -42.51 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.05 Total: 8.82 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -2.35 Total: 11.67 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.05 Total: -48.44 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.63 Total: -34.21 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.35 -8.16 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.007 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds