Wall clock time and date at job start Wed Apr 1 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99833 * 2 1 4 4 O 1.20823 * 120.00159 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99849 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46955 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.46913 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99916 * 265.56375 * 7 6 5 9 9 H 1.07999 * 120.00219 * 145.67698 * 8 7 6 10 10 C 1.38948 * 120.00120 * 325.67463 * 8 7 6 11 11 N 1.31417 * 119.99862 * 338.40514 * 10 8 7 12 12 Si 1.86800 * 120.00394 * 158.40426 * 10 8 7 13 13 H 1.48506 * 109.46976 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47005 * 119.99690 * 12 10 8 15 15 H 1.48494 * 109.47326 * 240.00150 * 12 10 8 16 16 C 1.34778 * 120.00247 * 85.56117 * 7 6 5 17 17 O 1.21297 * 119.99917 * 0.02562 * 16 7 6 18 18 C 1.50704 * 119.99921 * 179.97438 * 16 7 6 19 19 C 1.50699 * 109.46961 * 180.02562 * 18 16 7 20 20 C 1.35112 * 125.68866 * 125.58167 * 19 18 16 21 21 N 1.36831 * 107.17914 * 180.02562 * 20 19 18 22 22 C 1.36488 * 132.57076 * 179.35276 * 21 20 19 23 23 C 1.34945 * 120.61202 * 179.97438 * 22 21 20 24 24 C 1.40467 * 120.30041 * 0.02562 * 23 22 21 25 25 C 1.36028 * 119.69704 * 359.97438 * 24 23 22 26 26 C 1.50697 * 120.33709 * 179.97438 * 25 24 23 27 27 C 1.37081 * 107.00216 * 359.59497 * 21 20 19 28 28 N 1.32558 * 108.03285 * 0.10973 * 27 21 20 29 29 H 1.09000 * 109.47502 * 299.99716 * 1 2 3 30 30 H 1.08995 * 109.47124 * 60.00582 * 1 2 3 31 31 H 1.09001 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46870 * 60.00352 * 5 3 2 33 33 H 1.08995 * 109.46715 * 300.00108 * 5 3 2 34 34 H 1.08998 * 109.47158 * 60.00388 * 6 5 3 35 35 H 1.09004 * 109.47144 * 300.00136 * 6 5 3 36 36 H 0.97002 * 119.99904 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47179 * 60.00902 * 18 16 7 38 38 H 1.08995 * 109.47433 * 300.00094 * 18 16 7 39 39 H 1.08005 * 126.40478 * 359.39996 * 20 19 18 40 40 H 1.08006 * 119.68999 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.84857 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.15442 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.46529 * 90.00549 * 26 25 24 44 44 H 1.08997 * 109.47074 * 330.00307 * 26 25 24 45 45 H 1.08997 * 109.46832 * 210.00123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1429 2.9459 1.1848 9 1 7.1077 2.4762 1.3066 10 6 5.5905 3.6791 2.2279 11 7 4.6672 4.5809 1.9804 12 14 6.1602 3.3829 3.9821 13 1 7.2009 2.3235 3.9923 14 1 6.7271 4.6383 4.5370 15 1 5.0062 2.9518 4.8112 16 6 6.1407 2.7642 -1.1627 17 8 5.5393 2.6521 -2.2101 18 6 7.6457 2.8437 -1.1627 19 6 8.1530 2.7612 -2.5793 20 6 8.9718 3.6547 -3.1766 21 7 9.1891 3.2132 -4.4534 22 6 9.9148 3.7172 -5.4937 23 6 9.9638 3.0679 -6.6756 24 6 9.2658 1.8616 -6.8510 25 6 8.5386 1.3481 -5.8225 26 6 7.7837 0.0553 -5.9950 27 6 8.4930 2.0409 -4.5961 28 7 7.8777 1.7869 -3.4498 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7806 -0.8892 33 1 3.9556 0.7809 0.8908 34 1 3.6101 3.2359 0.8911 35 1 3.6107 3.2364 -0.8889 36 1 4.2814 5.0925 2.7086 37 1 8.0532 2.0163 -0.5818 38 1 7.9597 3.7885 -0.7192 39 1 9.3710 4.5548 -2.7328 40 1 10.4549 4.6442 -5.3696 41 1 10.5423 3.4776 -7.4904 42 1 9.3069 1.3437 -7.7979 43 1 8.4256 -0.7802 -5.7155 44 1 7.4803 -0.0521 -7.0363 45 1 6.8994 0.0631 -5.3578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:28 Heat of formation + Delta-G solvation = -46.395250 kcal Electronic energy + Delta-G solvation = -29794.996089 eV Core-core repulsion = 25585.615844 eV Total energy + Delta-G solvation = -4209.380245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.67049 -41.58451 -40.37933 -38.43380 -37.65484 -36.74005 -35.38490 -33.83206 -33.20558 -32.15978 -31.04636 -29.01435 -28.35719 -27.80744 -26.87182 -25.07138 -23.67342 -22.97671 -22.02202 -21.47911 -20.81619 -19.08238 -18.56446 -18.11342 -17.87501 -17.74096 -17.58960 -17.43792 -16.76408 -16.46095 -16.19963 -15.83894 -15.69836 -15.09659 -15.02995 -14.88623 -14.61288 -14.22412 -14.11209 -13.85897 -13.81547 -13.54240 -13.44746 -13.19107 -13.02242 -12.93866 -12.70846 -12.63896 -12.53787 -12.50523 -12.28323 -12.03262 -11.92138 -11.80790 -11.62861 -11.46682 -11.04353 -10.86592 -10.34135 -9.52181 -9.50020 -8.64308 -8.25967 -6.01726 -0.08566 0.42381 1.09933 1.45422 1.53350 1.63561 1.66687 1.75936 1.94786 2.12448 2.37615 2.63336 3.04010 3.15417 3.33163 3.57733 3.83524 3.87574 4.04040 4.09757 4.12062 4.22335 4.28926 4.29511 4.34377 4.46263 4.46960 4.59366 4.64555 4.67820 4.74157 4.77617 4.79435 4.93029 4.99426 5.02372 5.13721 5.23792 5.24322 5.40492 5.42351 5.54740 5.71299 5.75954 5.99625 6.28208 6.45181 6.67251 7.07640 7.17320 7.62512 8.06820 8.76644 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.003233 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.594545 B = 8657.278921 C =10904.531007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.115 4.115 6 C 0.136 3.864 7 N -0.453 5.453 8 C -0.354 4.354 9 H 0.110 0.890 10 C 0.002 3.998 11 N -0.893 5.893 12 Si 0.982 3.018 13 H -0.250 1.250 14 H -0.281 1.281 15 H -0.284 1.284 16 C 0.467 3.533 17 O -0.619 6.619 18 C -0.032 4.032 19 C 0.057 3.943 20 C -0.101 4.101 21 N -0.368 5.368 22 C 0.033 3.967 23 C -0.135 4.135 24 C -0.097 4.097 25 C -0.080 4.080 26 C -0.098 4.098 27 C 0.194 3.806 28 N -0.511 5.511 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.026 0.974 36 H 0.270 0.730 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.212 0.788 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.177 0.823 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -6.001 -11.677 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.012 3.988 7 N -0.172 5.172 8 C -0.480 4.480 9 H 0.127 0.873 10 C -0.201 4.201 11 N -0.530 5.530 12 Si 0.805 3.195 13 H -0.173 1.173 14 H -0.206 1.206 15 H -0.210 1.210 16 C 0.257 3.743 17 O -0.505 6.505 18 C -0.072 4.072 19 C -0.076 4.076 20 C -0.232 4.232 21 N -0.039 5.039 22 C -0.088 4.088 23 C -0.155 4.155 24 C -0.120 4.120 25 C -0.083 4.083 26 C -0.155 4.155 27 C -0.050 4.050 28 N -0.231 5.231 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.228 0.772 40 H 0.211 0.789 41 H 0.211 0.789 42 H 0.194 0.806 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.319 -6.243 -11.856 15.771 hybrid contribution -0.163 1.083 1.080 1.538 sum 8.156 -5.160 -10.776 14.466 Atomic orbital electron populations 1.23592 0.74728 1.05930 1.02450 1.86510 1.25226 1.32308 1.83845 1.23821 0.92060 0.81307 0.71006 1.90631 1.67808 1.37464 1.46758 1.21674 0.86873 1.01036 1.05746 1.20890 0.82729 0.92701 1.02503 1.43633 1.04344 1.63583 1.05624 1.19903 1.06105 1.32289 0.89750 0.87270 1.26229 0.96831 0.92913 1.04151 1.70071 1.28985 1.19918 1.34048 0.85052 0.78473 0.78638 0.77306 1.17294 1.20642 1.20995 1.20921 0.90713 0.79609 0.83013 1.90545 1.71388 1.55738 1.32827 1.19705 0.91687 1.05276 0.90561 1.20572 0.97655 0.92907 0.96446 1.22703 1.10687 1.05364 0.84441 1.42961 1.32141 1.18362 1.10463 1.22392 0.97664 1.02013 0.86768 1.21326 1.01595 0.95655 0.96964 1.21394 0.95372 0.96169 0.99102 1.19392 1.01204 0.98508 0.89148 1.20611 0.98893 0.92559 1.03430 1.21392 0.97842 0.88816 0.96979 1.70522 1.23765 1.28600 1.00204 0.91989 0.92237 0.84282 0.88592 0.86319 0.88296 0.95553 0.92007 0.87757 0.86672 0.77168 0.78890 0.78887 0.80607 0.90048 0.88232 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.36 -12.33 10.57 -51.35 -0.54 -12.87 16 3 C 0.47 19.70 7.96 71.24 0.57 20.27 16 4 O -0.54 -25.36 15.73 21.97 0.35 -25.01 16 5 C -0.11 -5.00 6.11 29.85 0.18 -4.82 16 6 C 0.14 7.13 4.21 86.38 0.36 7.49 16 7 N -0.45 -23.46 2.55 -635.54 -1.62 -25.08 16 8 C -0.35 -17.42 8.70 84.04 0.73 -16.68 16 9 H 0.11 4.93 6.98 -2.91 -0.02 4.91 16 10 C 0.00 0.08 4.94 84.93 0.42 0.50 16 11 N -0.89 -48.43 11.31 21.66 0.24 -48.18 16 12 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 13 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 14 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.47 24.10 7.60 87.66 0.67 24.76 16 17 O -0.62 -35.99 15.21 -3.08 -0.05 -36.04 16 18 C -0.03 -1.34 4.92 29.10 0.14 -1.19 16 19 C 0.06 2.35 5.85 41.58 0.24 2.59 16 20 C -0.10 -3.35 11.63 83.19 0.97 -2.38 16 21 N -0.37 -11.23 2.94 -352.15 -1.04 -12.26 16 22 C 0.03 0.63 10.95 83.21 0.91 1.54 16 23 C -0.14 -1.96 9.98 22.06 0.22 -1.74 16 24 C -0.10 -1.71 9.72 22.30 0.22 -1.49 16 25 C -0.08 -2.19 5.90 -19.72 -0.12 -2.30 16 26 C -0.10 -2.37 10.03 71.23 0.71 -1.66 16 27 C 0.19 7.02 7.52 134.11 1.01 8.03 16 28 N -0.51 -22.55 10.66 -182.40 -1.94 -24.50 16 29 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 4.24 8.14 -2.39 -0.02 4.23 16 33 H 0.12 4.76 8.14 -2.39 -0.02 4.74 16 34 H 0.10 5.56 5.30 -2.39 -0.01 5.55 16 35 H 0.03 1.51 7.52 -2.39 -0.02 1.49 16 36 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.10 4.07 7.65 -2.39 -0.02 4.05 16 38 H 0.12 4.40 8.06 -2.39 -0.02 4.38 16 39 H 0.21 5.21 8.06 -2.91 -0.02 5.19 16 40 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.10 1.69 8.09 -2.39 -0.02 1.67 16 45 H 0.04 1.36 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -82.30 387.51 6.88 -75.42 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 1.01 Total: 33.11 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 8.43 Total: 34.77 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.36 Total: -110.02 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: -0.24 Total: -73.92 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -82.30 6.88 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.029 kcal (2) G-P(sol) polarization free energy of solvation -82.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds