Wall clock time and date at job start Wed Apr 1 2020 03:15:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38041 * 126.28837 * 2 1
4 4 C 1.47424 * 126.41766 * 359.97374 * 3 2 1
5 5 O 1.21601 * 119.99806 * 34.40661 * 4 3 2
6 6 N 1.34776 * 120.00258 * 214.40121 * 4 3 2
7 7 C 1.47153 * 120.98334 * 3.06020 * 6 4 3
8 8 C 1.53297 * 108.38176 * 129.44194 * 7 6 4
9 9 O 1.42959 * 109.22196 * 52.30464 * 8 7 6
10 10 C 1.42958 * 114.16938 * 297.41421 * 9 8 7
11 11 C 1.47153 * 120.98312 * 182.77995 * 6 4 3
12 12 H 1.09006 * 109.67996 * 110.83369 * 11 6 4
13 13 C 1.50704 * 109.67953 * 350.28499 * 11 6 4
14 14 C 1.34513 * 125.79198 * 116.55174 * 13 11 6
15 15 C 1.41376 * 106.84409 * 179.97438 * 14 13 11
16 16 C 1.34515 * 106.83925 * 359.97438 * 15 14 13
17 17 O 1.34297 * 125.78730 * 296.23653 * 13 11 6
18 18 C 1.41291 * 107.16935 * 179.97438 * 3 2 1
19 19 N 1.30447 * 108.02301 * 0.02562 * 18 3 2
20 20 N 1.34259 * 126.29019 * 179.97438 * 2 1 3
21 21 C 1.46494 * 125.75603 * 0.04385 * 20 2 1
22 22 C 1.50700 * 109.47379 * 269.99689 * 21 20 2
23 23 H 1.07998 * 119.99575 * 0.02562 * 22 21 20
24 24 C 1.37879 * 120.00189 * 179.97438 * 22 21 20
25 25 N 1.31513 * 119.99816 * 0.02562 * 24 22 21
26 26 Si 1.86800 * 119.99795 * 180.02562 * 24 22 21
27 27 H 1.48496 * 109.46944 * 90.00192 * 26 24 22
28 28 H 1.48503 * 109.47031 * 210.00169 * 26 24 22
29 29 H 1.48498 * 109.47222 * 330.00044 * 26 24 22
30 30 H 1.08999 * 109.47299 * 90.00412 * 1 2 3
31 31 H 1.09002 * 109.47152 * 209.99743 * 1 2 3
32 32 H 1.09005 * 109.47466 * 330.00142 * 1 2 3
33 33 H 1.08995 * 109.68365 * 249.16638 * 7 6 4
34 34 H 1.08999 * 109.67686 * 9.72553 * 7 6 4
35 35 H 1.08995 * 109.51190 * 172.23300 * 8 7 6
36 36 H 1.09002 * 109.51077 * 292.38110 * 8 7 6
37 37 H 1.09003 * 109.51276 * 182.50265 * 10 9 8
38 38 H 1.08996 * 109.51705 * 302.66088 * 10 9 8
39 39 H 1.08005 * 126.57683 * 0.03491 * 14 13 11
40 40 H 1.08001 * 126.58246 * 180.02562 * 15 14 13
41 41 H 1.08000 * 125.78913 * 180.02562 * 16 15 14
42 42 H 1.07999 * 125.99116 * 180.02562 * 18 3 2
43 43 H 1.09002 * 109.47053 * 29.99798 * 21 20 2
44 44 H 1.09001 * 109.47387 * 149.99644 * 21 20 2
45 45 H 0.96998 * 119.99320 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3240 1.1127 0.0000
4 6 1.8857 2.5203 -0.0005
5 8 0.8752 2.8426 0.5941
6 7 2.6051 3.4498 -0.6600
7 6 3.7939 3.0738 -1.4415
8 6 3.6676 3.6891 -2.8399
9 8 3.4059 5.0891 -2.7161
10 6 2.1750 5.3986 -2.0584
11 6 2.2215 4.8701 -0.6246
12 1 2.9571 5.4349 -0.0518
13 6 0.8630 5.0132 0.0118
14 6 0.5962 5.6629 1.1590
15 6 -0.7954 5.5484 1.3805
16 6 -1.2959 4.8360 0.3551
17 8 -0.2875 4.5186 -0.4733
18 6 3.6590 0.6499 0.0006
19 7 3.6340 -0.6543 0.0004
20 7 2.3016 -1.0822 0.0005
21 6 1.8501 -2.4758 0.0002
22 6 1.6944 -2.9537 1.4209
23 1 1.9099 -2.2860 2.2419
24 6 1.2759 -4.2431 1.6726
25 7 1.0130 -5.0561 0.6727
26 14 1.0823 -4.8353 3.4336
27 1 -0.3008 -4.5602 3.8991
28 1 1.3445 -6.2956 3.4965
29 1 2.0492 -4.1208 4.3052
30 1 -0.3634 -0.0001 -1.0276
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5138
33 1 4.6904 3.4546 -0.9524
34 1 3.8519 1.9883 -1.5220
35 1 4.5973 3.5396 -3.3888
36 1 2.8470 3.2113 -3.3752
37 1 2.0310 6.4790 -2.0450
38 1 1.3490 4.9271 -2.5908
39 1 1.3083 6.1748 1.7894
40 1 -1.3504 5.9556 2.2128
41 1 -2.3333 4.5682 0.2190
42 1 4.5448 1.2677 0.0012
43 1 0.8917 -2.5471 -0.5142
44 1 2.5850 -3.0958 -0.5132
45 1 0.7190 -5.9633 0.8499
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000889031160.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:15:17
Heat of formation + Delta-G solvation = 32.408094 kcal
Electronic energy + Delta-G solvation = -31206.848479 eV
Core-core repulsion = 27000.885404 eV
Total energy + Delta-G solvation = -4205.963076 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.40464 -40.99439 -39.82977 -38.03421 -34.90783 -33.98901 -33.09003 -32.47965
-32.08139 -31.06319 -29.08236 -27.83251 -27.19988 -26.57849 -24.48141 -23.45449
-22.88498 -21.65894 -21.02357 -20.72663 -19.59958 -18.57220 -17.48786 -17.02728
-16.82777 -16.50205 -15.99734 -15.69311 -15.63124 -15.29825 -15.22832 -14.68217
-14.49127 -14.39494 -13.94075 -13.71226 -13.33464 -13.09757 -12.58321 -12.57776
-12.55337 -12.47290 -12.30125 -12.19086 -12.00166 -11.85211 -11.55428 -11.51322
-11.16271 -10.96535 -10.92646 -10.42300 -10.36799 -10.29682 -9.96075 -9.79116
-9.52369 -8.73887 -8.68948 -8.62170 -8.00295 -7.86955 -6.36468 -4.44442
1.92083 2.16833 2.69759 2.72257 2.97788 3.16647 3.20103 3.23260
3.26200 3.36170 3.53399 3.65118 4.22427 4.36289 4.54903 4.72536
4.77600 4.96331 4.98046 5.01708 5.07897 5.17920 5.25086 5.27685
5.34562 5.43932 5.46627 5.53242 5.65038 5.67818 5.86074 5.96266
5.98345 6.06496 6.23492 6.34293 6.42911 6.50179 6.72586 6.73332
6.78247 6.85121 7.09509 7.36313 7.45891 7.53164 7.73367 7.74685
8.31035 8.43993 8.61662 9.22937 10.71637
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.014475 B = 0.003238 C = 0.002823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1933.910072 B = 8643.926817 C = 9915.039732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C 0.161 3.839
3 C -0.327 4.327
4 C 0.607 3.393
5 O -0.515 6.515
6 N -0.618 5.618
7 C 0.066 3.934
8 C 0.044 3.956
9 O -0.377 6.377
10 C 0.054 3.946
11 C 0.196 3.804
12 H 0.106 0.894
13 C 0.029 3.971
14 C -0.213 4.213
15 C -0.212 4.212
16 C -0.032 4.032
17 O -0.161 6.161
18 C 0.051 3.949
19 N -0.293 5.293
20 N -0.312 5.312
21 C 0.252 3.748
22 C -0.541 4.541
23 H 0.065 0.935
24 C 0.068 3.932
25 N -0.889 5.889
26 Si 0.908 3.092
27 H -0.276 1.276
28 H -0.282 1.282
29 H -0.271 1.271
30 H 0.073 0.927
31 H 0.086 0.914
32 H 0.094 0.906
33 H 0.078 0.922
34 H 0.114 0.886
35 H 0.109 0.891
36 H 0.058 0.942
37 H 0.109 0.891
38 H 0.062 0.938
39 H 0.137 0.863
40 H 0.139 0.861
41 H 0.193 0.807
42 H 0.179 0.821
43 H 0.056 0.944
44 H 0.057 0.943
45 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.863 20.484 -6.296 21.447
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.024 3.976
3 C -0.343 4.343
4 C 0.398 3.602
5 O -0.392 6.392
6 N -0.355 5.355
7 C -0.057 4.057
8 C -0.033 4.033
9 O -0.295 6.295
10 C -0.023 4.023
11 C 0.092 3.908
12 H 0.124 0.876
13 C -0.022 4.022
14 C -0.234 4.234
15 C -0.231 4.231
16 C -0.100 4.100
17 O -0.056 6.056
18 C -0.135 4.135
19 N -0.113 5.113
20 N -0.089 5.089
21 C 0.134 3.866
22 C -0.580 4.580
23 H 0.084 0.916
24 C -0.136 4.136
25 N -0.527 5.527
26 Si 0.734 3.266
27 H -0.202 1.202
28 H -0.208 1.208
29 H -0.196 1.196
30 H 0.092 0.908
31 H 0.105 0.895
32 H 0.113 0.887
33 H 0.096 0.904
34 H 0.132 0.868
35 H 0.127 0.873
36 H 0.077 0.923
37 H 0.127 0.873
38 H 0.081 0.919
39 H 0.155 0.845
40 H 0.157 0.843
41 H 0.210 0.790
42 H 0.196 0.804
43 H 0.074 0.926
44 H 0.075 0.925
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 1.055 19.139 -6.363 20.196
hybrid contribution -0.636 0.024 1.409 1.546
sum 0.419 19.163 -4.953 19.797
Atomic orbital electron populations
1.20605 0.87085 1.05251 1.02958 1.21357 0.94773 0.86438 0.95001
1.19534 0.93368 0.92043 1.29354 1.17461 0.81887 0.83896 0.76928
1.90715 1.25186 1.79385 1.43879 1.48110 1.29757 1.05702 1.51944
1.22793 0.87800 1.03274 0.91798 1.23075 1.02519 0.81640 0.96070
1.87967 1.39570 1.23727 1.78225 1.22943 0.87352 1.01607 0.90440
1.20166 0.89892 0.83455 0.97249 0.87622 1.21274 0.86326 0.98251
0.96339 1.21220 0.96492 1.07670 0.97968 1.21566 0.94725 1.05706
1.01123 1.23702 0.92582 1.01887 0.91851 1.83960 1.15195 1.60459
1.46004 1.23824 0.96258 0.92502 1.00953 1.77156 0.98655 1.12099
1.23377 1.49364 1.02404 1.08269 1.48838 1.19852 0.96370 0.70867
0.99463 1.21259 1.47504 0.98185 0.91018 0.91635 1.24917 0.94394
0.95956 0.98317 1.69912 1.44432 1.07211 1.31130 0.86324 0.78807
0.77966 0.83471 1.20182 1.20756 1.19596 0.90832 0.89533 0.88740
0.90418 0.86811 0.87326 0.92324 0.87275 0.91920 0.84508 0.84321
0.79031 0.80447 0.92630 0.92465 0.92093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.79 9.67 36.00 0.35 -1.44 16
2 C 0.16 3.21 7.00 -81.60 -0.57 2.64 16
3 C -0.33 -5.89 5.44 -105.07 -0.57 -6.46 16
4 C 0.61 10.08 7.43 -12.52 -0.09 9.99 16
5 O -0.52 -9.62 10.82 -18.79 -0.20 -9.82 16
6 N -0.62 -8.03 3.03 -167.56 -0.51 -8.54 16
7 C 0.07 0.67 5.47 -3.53 -0.02 0.65 16
8 C 0.04 0.40 6.98 37.31 0.26 0.66 16
9 O -0.38 -3.83 10.74 -35.23 -0.38 -4.21 16
10 C 0.05 0.53 6.25 37.10 0.23 0.77 16
11 C 0.20 2.25 3.53 -68.79 -0.24 2.01 16
12 H 0.11 1.06 8.11 -51.93 -0.42 0.64 16
13 C 0.03 0.40 3.52 -35.62 -0.13 0.27 16
14 C -0.21 -2.82 10.63 -39.71 -0.42 -3.24 16
15 C -0.21 -2.70 10.91 -39.70 -0.43 -3.13 16
16 C -0.03 -0.41 11.80 29.42 0.35 -0.06 16
17 O -0.16 -2.36 9.02 -18.35 -0.17 -2.53 16
18 C 0.05 0.87 9.58 -16.98 -0.16 0.70 16
19 N -0.29 -6.14 12.50 30.86 0.39 -5.75 16
20 N -0.31 -6.90 3.56 -57.78 -0.21 -7.10 16
21 C 0.25 6.17 5.78 -5.20 -0.03 6.14 16
22 C -0.54 -14.52 9.39 -34.44 -0.32 -14.85 16
23 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16
24 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16
25 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16
26 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16
27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
29 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16
32 H 0.09 1.68 6.56 -51.93 -0.34 1.34 16
33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.11 1.24 4.48 -51.93 -0.23 1.01 16
35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16
38 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16
39 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16
40 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16
41 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16
42 H 0.18 2.28 6.76 -52.49 -0.35 1.93 16
43 H 0.06 1.35 7.62 -51.93 -0.40 0.96 16
44 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16
45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16
LS Contribution 371.12 15.07 5.59 5.59
Total: -1.00 -32.08 371.12 -7.59 -39.67
By element:
Atomic # 1 Polarization: 10.08 SS G_CDS: -5.92 Total: 4.17 kcal
Atomic # 6 Polarization: -1.72 SS G_CDS: -1.90 Total: -3.63 kcal
Atomic # 7 Polarization: -45.45 SS G_CDS: 0.41 Total: -45.04 kcal
Atomic # 8 Polarization: -15.81 SS G_CDS: -0.75 Total: -16.55 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -32.08 -7.59 -39.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000889031160.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.075 kcal
(2) G-P(sol) polarization free energy of solvation -32.082 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.993 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds