Wall clock time and date at job start Wed Apr 1 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.28837 * 2 1 4 4 C 1.47424 * 126.41766 * 359.97374 * 3 2 1 5 5 O 1.21601 * 119.99806 * 34.40661 * 4 3 2 6 6 N 1.34776 * 120.00258 * 214.40121 * 4 3 2 7 7 C 1.47153 * 120.98334 * 3.06020 * 6 4 3 8 8 C 1.53297 * 108.38176 * 129.44194 * 7 6 4 9 9 O 1.42959 * 109.22196 * 52.30464 * 8 7 6 10 10 C 1.42958 * 114.16938 * 297.41421 * 9 8 7 11 11 C 1.47153 * 120.98312 * 182.77995 * 6 4 3 12 12 H 1.09006 * 109.67996 * 110.83369 * 11 6 4 13 13 C 1.50704 * 109.67953 * 350.28499 * 11 6 4 14 14 C 1.34513 * 125.79198 * 116.55174 * 13 11 6 15 15 C 1.41376 * 106.84409 * 179.97438 * 14 13 11 16 16 C 1.34515 * 106.83925 * 359.97438 * 15 14 13 17 17 O 1.34297 * 125.78730 * 296.23653 * 13 11 6 18 18 C 1.41291 * 107.16935 * 179.97438 * 3 2 1 19 19 N 1.30447 * 108.02301 * 0.02562 * 18 3 2 20 20 N 1.34259 * 126.29019 * 179.97438 * 2 1 3 21 21 C 1.46494 * 125.75603 * 0.04385 * 20 2 1 22 22 C 1.50700 * 109.47379 * 269.99689 * 21 20 2 23 23 H 1.07998 * 119.99575 * 0.02562 * 22 21 20 24 24 C 1.37879 * 120.00189 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99816 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99795 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46944 * 90.00192 * 26 24 22 28 28 H 1.48503 * 109.47031 * 210.00169 * 26 24 22 29 29 H 1.48498 * 109.47222 * 330.00044 * 26 24 22 30 30 H 1.08999 * 109.47299 * 90.00412 * 1 2 3 31 31 H 1.09002 * 109.47152 * 209.99743 * 1 2 3 32 32 H 1.09005 * 109.47466 * 330.00142 * 1 2 3 33 33 H 1.08995 * 109.68365 * 249.16638 * 7 6 4 34 34 H 1.08999 * 109.67686 * 9.72553 * 7 6 4 35 35 H 1.08995 * 109.51190 * 172.23300 * 8 7 6 36 36 H 1.09002 * 109.51077 * 292.38110 * 8 7 6 37 37 H 1.09003 * 109.51276 * 182.50265 * 10 9 8 38 38 H 1.08996 * 109.51705 * 302.66088 * 10 9 8 39 39 H 1.08005 * 126.57683 * 0.03491 * 14 13 11 40 40 H 1.08001 * 126.58246 * 180.02562 * 15 14 13 41 41 H 1.08000 * 125.78913 * 180.02562 * 16 15 14 42 42 H 1.07999 * 125.99116 * 180.02562 * 18 3 2 43 43 H 1.09002 * 109.47053 * 29.99798 * 21 20 2 44 44 H 1.09001 * 109.47387 * 149.99644 * 21 20 2 45 45 H 0.96998 * 119.99320 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.8752 2.8426 0.5941 6 7 2.6051 3.4498 -0.6600 7 6 3.7939 3.0738 -1.4415 8 6 3.6676 3.6891 -2.8399 9 8 3.4059 5.0891 -2.7161 10 6 2.1750 5.3986 -2.0584 11 6 2.2215 4.8701 -0.6246 12 1 2.9571 5.4349 -0.0518 13 6 0.8630 5.0132 0.0118 14 6 0.5962 5.6629 1.1590 15 6 -0.7954 5.5484 1.3805 16 6 -1.2959 4.8360 0.3551 17 8 -0.2875 4.5186 -0.4733 18 6 3.6590 0.6499 0.0006 19 7 3.6340 -0.6543 0.0004 20 7 2.3016 -1.0822 0.0005 21 6 1.8501 -2.4758 0.0002 22 6 1.6944 -2.9537 1.4209 23 1 1.9099 -2.2860 2.2419 24 6 1.2759 -4.2431 1.6726 25 7 1.0130 -5.0561 0.6727 26 14 1.0823 -4.8353 3.4336 27 1 -0.3008 -4.5602 3.8991 28 1 1.3445 -6.2956 3.4965 29 1 2.0492 -4.1208 4.3052 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 4.6904 3.4546 -0.9524 34 1 3.8519 1.9883 -1.5220 35 1 4.5973 3.5396 -3.3888 36 1 2.8470 3.2113 -3.3752 37 1 2.0310 6.4790 -2.0450 38 1 1.3490 4.9271 -2.5908 39 1 1.3083 6.1748 1.7894 40 1 -1.3504 5.9556 2.2128 41 1 -2.3333 4.5682 0.2190 42 1 4.5448 1.2677 0.0012 43 1 0.8917 -2.5471 -0.5142 44 1 2.5850 -3.0958 -0.5132 45 1 0.7190 -5.9633 0.8499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889031160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:17 Heat of formation + Delta-G solvation = 32.408094 kcal Electronic energy + Delta-G solvation = -31206.848479 eV Core-core repulsion = 27000.885404 eV Total energy + Delta-G solvation = -4205.963076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40464 -40.99439 -39.82977 -38.03421 -34.90783 -33.98901 -33.09003 -32.47965 -32.08139 -31.06319 -29.08236 -27.83251 -27.19988 -26.57849 -24.48141 -23.45449 -22.88498 -21.65894 -21.02357 -20.72663 -19.59958 -18.57220 -17.48786 -17.02728 -16.82777 -16.50205 -15.99734 -15.69311 -15.63124 -15.29825 -15.22832 -14.68217 -14.49127 -14.39494 -13.94075 -13.71226 -13.33464 -13.09757 -12.58321 -12.57776 -12.55337 -12.47290 -12.30125 -12.19086 -12.00166 -11.85211 -11.55428 -11.51322 -11.16271 -10.96535 -10.92646 -10.42300 -10.36799 -10.29682 -9.96075 -9.79116 -9.52369 -8.73887 -8.68948 -8.62170 -8.00295 -7.86955 -6.36468 -4.44442 1.92083 2.16833 2.69759 2.72257 2.97788 3.16647 3.20103 3.23260 3.26200 3.36170 3.53399 3.65118 4.22427 4.36289 4.54903 4.72536 4.77600 4.96331 4.98046 5.01708 5.07897 5.17920 5.25086 5.27685 5.34562 5.43932 5.46627 5.53242 5.65038 5.67818 5.86074 5.96266 5.98345 6.06496 6.23492 6.34293 6.42911 6.50179 6.72586 6.73332 6.78247 6.85121 7.09509 7.36313 7.45891 7.53164 7.73367 7.74685 8.31035 8.43993 8.61662 9.22937 10.71637 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.003238 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.910072 B = 8643.926817 C = 9915.039732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.161 3.839 3 C -0.327 4.327 4 C 0.607 3.393 5 O -0.515 6.515 6 N -0.618 5.618 7 C 0.066 3.934 8 C 0.044 3.956 9 O -0.377 6.377 10 C 0.054 3.946 11 C 0.196 3.804 12 H 0.106 0.894 13 C 0.029 3.971 14 C -0.213 4.213 15 C -0.212 4.212 16 C -0.032 4.032 17 O -0.161 6.161 18 C 0.051 3.949 19 N -0.293 5.293 20 N -0.312 5.312 21 C 0.252 3.748 22 C -0.541 4.541 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.276 1.276 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.193 0.807 42 H 0.179 0.821 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 20.484 -6.296 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.024 3.976 3 C -0.343 4.343 4 C 0.398 3.602 5 O -0.392 6.392 6 N -0.355 5.355 7 C -0.057 4.057 8 C -0.033 4.033 9 O -0.295 6.295 10 C -0.023 4.023 11 C 0.092 3.908 12 H 0.124 0.876 13 C -0.022 4.022 14 C -0.234 4.234 15 C -0.231 4.231 16 C -0.100 4.100 17 O -0.056 6.056 18 C -0.135 4.135 19 N -0.113 5.113 20 N -0.089 5.089 21 C 0.134 3.866 22 C -0.580 4.580 23 H 0.084 0.916 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.734 3.266 27 H -0.202 1.202 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.210 0.790 42 H 0.196 0.804 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.055 19.139 -6.363 20.196 hybrid contribution -0.636 0.024 1.409 1.546 sum 0.419 19.163 -4.953 19.797 Atomic orbital electron populations 1.20605 0.87085 1.05251 1.02958 1.21357 0.94773 0.86438 0.95001 1.19534 0.93368 0.92043 1.29354 1.17461 0.81887 0.83896 0.76928 1.90715 1.25186 1.79385 1.43879 1.48110 1.29757 1.05702 1.51944 1.22793 0.87800 1.03274 0.91798 1.23075 1.02519 0.81640 0.96070 1.87967 1.39570 1.23727 1.78225 1.22943 0.87352 1.01607 0.90440 1.20166 0.89892 0.83455 0.97249 0.87622 1.21274 0.86326 0.98251 0.96339 1.21220 0.96492 1.07670 0.97968 1.21566 0.94725 1.05706 1.01123 1.23702 0.92582 1.01887 0.91851 1.83960 1.15195 1.60459 1.46004 1.23824 0.96258 0.92502 1.00953 1.77156 0.98655 1.12099 1.23377 1.49364 1.02404 1.08269 1.48838 1.19852 0.96370 0.70867 0.99463 1.21259 1.47504 0.98185 0.91018 0.91635 1.24917 0.94394 0.95956 0.98317 1.69912 1.44432 1.07211 1.31130 0.86324 0.78807 0.77966 0.83471 1.20182 1.20756 1.19596 0.90832 0.89533 0.88740 0.90418 0.86811 0.87326 0.92324 0.87275 0.91920 0.84508 0.84321 0.79031 0.80447 0.92630 0.92465 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.67 36.00 0.35 -1.44 16 2 C 0.16 3.21 7.00 -81.60 -0.57 2.64 16 3 C -0.33 -5.89 5.44 -105.07 -0.57 -6.46 16 4 C 0.61 10.08 7.43 -12.52 -0.09 9.99 16 5 O -0.52 -9.62 10.82 -18.79 -0.20 -9.82 16 6 N -0.62 -8.03 3.03 -167.56 -0.51 -8.54 16 7 C 0.07 0.67 5.47 -3.53 -0.02 0.65 16 8 C 0.04 0.40 6.98 37.31 0.26 0.66 16 9 O -0.38 -3.83 10.74 -35.23 -0.38 -4.21 16 10 C 0.05 0.53 6.25 37.10 0.23 0.77 16 11 C 0.20 2.25 3.53 -68.79 -0.24 2.01 16 12 H 0.11 1.06 8.11 -51.93 -0.42 0.64 16 13 C 0.03 0.40 3.52 -35.62 -0.13 0.27 16 14 C -0.21 -2.82 10.63 -39.71 -0.42 -3.24 16 15 C -0.21 -2.70 10.91 -39.70 -0.43 -3.13 16 16 C -0.03 -0.41 11.80 29.42 0.35 -0.06 16 17 O -0.16 -2.36 9.02 -18.35 -0.17 -2.53 16 18 C 0.05 0.87 9.58 -16.98 -0.16 0.70 16 19 N -0.29 -6.14 12.50 30.86 0.39 -5.75 16 20 N -0.31 -6.90 3.56 -57.78 -0.21 -7.10 16 21 C 0.25 6.17 5.78 -5.20 -0.03 6.14 16 22 C -0.54 -14.52 9.39 -34.44 -0.32 -14.85 16 23 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 24 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 25 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 26 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 32 H 0.09 1.68 6.56 -51.93 -0.34 1.34 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 1.24 4.48 -51.93 -0.23 1.01 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 39 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.18 2.28 6.76 -52.49 -0.35 1.93 16 43 H 0.06 1.35 7.62 -51.93 -0.40 0.96 16 44 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -32.08 371.12 -7.59 -39.67 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.92 Total: 4.17 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.90 Total: -3.63 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.41 Total: -45.04 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.75 Total: -16.55 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.08 -7.59 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889031160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.075 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds