Wall clock time and date at job start Wed Apr 1 2020 03:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47195 * 109.51295 * 2 1 4 4 N 2.60796 * 109.51482 * 359.97438 * 2 1 3 5 5 C 1.52874 * 109.58408 * 239.97694 * 2 1 3 6 6 N 1.47156 * 108.60921 * 187.92481 * 5 2 1 7 7 C 1.34776 * 120.98139 * 230.50410 * 6 5 2 8 8 O 1.21582 * 120.00323 * 354.73418 * 7 6 5 9 9 N 1.34773 * 119.99620 * 174.73798 * 7 6 5 10 10 C 1.46504 * 120.00048 * 185.16763 * 9 7 6 11 11 C 1.50701 * 109.47489 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.92872 * 89.99589 * 11 10 9 13 13 C 1.38104 * 120.06417 * 180.02562 * 12 11 10 14 14 C 1.38874 * 119.93223 * 359.97438 * 13 12 11 15 15 O 1.35751 * 120.06708 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00156 * 5.49261 * 15 14 13 17 17 H 1.07996 * 119.99842 * 354.95002 * 16 15 14 18 18 C 1.38657 * 119.99917 * 174.67176 * 16 15 14 19 19 N 1.31559 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46972 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46890 * 119.99922 * 20 18 16 23 23 H 1.48501 * 109.47036 * 239.99716 * 20 18 16 24 24 C 1.38876 * 119.86388 * 0.27486 * 14 13 12 25 25 C 1.38103 * 119.92728 * 359.49062 * 24 14 13 26 26 C 1.47153 * 118.03376 * 50.22918 * 6 5 2 27 27 C 1.53299 * 108.38294 * 309.71762 * 26 6 5 28 28 O 1.42959 * 109.50895 * 120.10071 * 2 1 3 29 29 H 1.08997 * 109.47367 * 299.90256 * 1 2 3 30 30 H 1.09003 * 109.46742 * 59.90045 * 1 2 3 31 31 H 1.08996 * 109.47361 * 179.89718 * 1 2 3 32 32 H 1.09002 * 109.61698 * 68.10779 * 5 2 1 33 33 H 1.08999 * 109.52933 * 307.69137 * 5 2 1 34 34 H 0.97004 * 120.00744 * 5.16762 * 9 7 6 35 35 H 1.09004 * 109.46624 * 59.99983 * 10 9 7 36 36 H 1.09001 * 109.47357 * 299.99988 * 10 9 7 37 37 H 1.08000 * 119.96787 * 0.02562 * 12 11 10 38 38 H 1.08002 * 120.03273 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99873 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.03420 * 179.72631 * 24 14 13 41 41 H 1.08003 * 119.96302 * 180.23631 * 25 24 14 42 42 H 1.09004 * 109.68080 * 69.43513 * 26 6 5 43 43 H 1.08995 * 109.68145 * 189.99037 * 26 6 5 44 44 H 1.09003 * 109.50954 * 172.22351 * 27 26 6 45 45 H 1.08999 * 109.51235 * 292.32265 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3874 0.0000 4 7 2.4012 2.4581 -0.0011 5 6 2.0424 -0.7207 -1.2471 6 7 3.5012 -0.8768 -1.1330 7 6 4.3194 -0.5045 -2.1372 8 8 3.8518 -0.1214 -3.1921 9 7 5.6559 -0.5570 -1.9720 10 6 6.5441 -0.0467 -3.0194 11 6 7.9783 -0.2207 -2.5908 12 6 8.6560 -1.3846 -2.9048 13 6 9.9702 -1.5472 -2.5129 14 6 10.6114 -0.5403 -1.8033 15 8 11.9030 -0.6974 -1.4162 16 6 12.5416 -1.8032 -1.8492 17 1 12.0022 -2.5551 -2.4060 18 6 13.8921 -1.9724 -1.5843 19 7 14.5503 -1.0542 -0.9102 20 14 14.7769 -3.5041 -2.1848 21 1 13.8194 -4.3757 -2.9119 22 1 15.8813 -3.1122 -3.0969 23 1 15.3331 -4.2421 -1.0224 24 6 9.9265 0.6252 -1.4850 25 6 8.6139 0.7838 -1.8839 26 6 4.0406 -1.4458 0.1122 27 6 3.4311 -0.6849 1.2952 28 8 2.0074 -0.6758 1.1658 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0276 -0.0018 32 1 1.8044 -0.1325 -2.1334 33 1 1.5728 -1.7016 -1.3198 34 1 6.0299 -0.9325 -1.1596 35 1 6.3404 1.0113 -3.1848 36 1 6.3711 -0.5987 -3.9433 37 1 8.1569 -2.1672 -3.4571 38 1 10.4991 -2.4562 -2.7588 39 1 15.4952 -1.1724 -0.7253 40 1 10.4211 1.4082 -0.9294 41 1 8.0820 1.6916 -1.6400 42 1 3.7754 -2.5011 0.1787 43 1 5.1251 -1.3377 0.1256 44 1 3.7088 -1.1777 2.2270 45 1 3.8036 0.3395 1.3000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892712921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:26 Heat of formation + Delta-G solvation = -27.500088 kcal Electronic energy + Delta-G solvation = -29277.063180 eV Core-core repulsion = 25068.502290 eV Total energy + Delta-G solvation = -4208.560889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.15688 -39.51726 -39.01332 -36.94837 -36.56491 -35.16977 -34.64912 -33.61516 -32.39522 -30.33873 -30.02448 -29.33054 -27.17277 -25.74809 -24.60774 -24.21160 -23.32146 -22.09533 -20.73522 -20.29060 -18.70708 -18.49687 -18.10765 -17.17124 -16.94351 -16.35255 -15.92604 -15.67662 -15.01534 -14.91497 -14.68521 -14.47571 -14.42072 -14.23340 -14.00541 -13.91201 -13.68709 -13.48655 -13.05430 -13.00789 -12.83538 -12.79843 -12.73089 -12.54654 -12.20319 -12.15442 -12.10281 -11.72201 -11.44046 -11.35511 -11.01466 -10.92607 -10.80203 -10.73078 -10.50376 -10.26659 -9.46536 -9.23559 -8.95409 -8.78807 -8.33048 -7.37789 -6.56570 -4.15496 1.89285 2.08636 2.11946 2.31603 2.46862 3.01410 3.05274 3.07264 3.12117 3.12808 3.27658 3.72880 3.87229 4.00421 4.30541 4.38496 4.47028 4.59329 4.67901 4.94476 4.97711 5.00918 5.10321 5.12373 5.15582 5.19477 5.23653 5.31200 5.39800 5.51777 5.62476 5.77251 5.82693 5.96602 6.08175 6.31083 6.33645 6.45226 6.55974 6.61743 6.76341 6.92727 7.07071 7.10987 7.23238 7.31230 7.66725 7.77638 7.88128 8.41661 8.88803 9.56604 10.60900 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.001985 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.072102 B =14104.469306 C =14202.397111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.204 3.796 3 C 0.179 3.821 4 N -0.399 5.399 5 C 0.114 3.886 6 N -0.640 5.640 7 C 0.708 3.292 8 O -0.588 6.588 9 N -0.735 5.735 10 C 0.196 3.804 11 C -0.216 4.216 12 C -0.049 4.049 13 C -0.237 4.237 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.858 5.858 20 Si 0.943 3.057 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.195 4.195 25 C -0.054 4.054 26 C 0.075 3.925 27 C 0.040 3.960 28 O -0.350 6.350 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.271 0.729 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.119 -3.490 3.314 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.160 3.840 3 C -0.141 4.141 4 N -0.076 5.076 5 C -0.011 4.011 6 N -0.379 5.379 7 C 0.410 3.590 8 O -0.466 6.466 9 N -0.392 5.392 10 C 0.074 3.926 11 C -0.218 4.218 12 C -0.068 4.068 13 C -0.257 4.257 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.215 4.215 25 C -0.072 4.072 26 C -0.048 4.048 27 C -0.037 4.037 28 O -0.266 6.266 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.551 -1.505 2.876 24.765 hybrid contribution 0.928 -1.240 0.037 1.549 sum -23.623 -2.745 2.913 23.960 Atomic orbital electron populations 1.21796 0.88255 1.05086 1.04357 1.19409 0.96315 0.79959 0.88340 1.29781 0.94266 0.95599 0.94454 1.81207 1.07345 1.12628 1.06408 1.22044 0.79725 1.02050 0.97313 1.47285 1.06087 1.67951 1.16586 1.15853 0.81608 0.78343 0.83203 1.90913 1.75435 1.54419 1.25822 1.45687 1.03699 1.66527 1.23275 1.19871 0.85013 0.98678 0.89052 1.19198 0.95021 0.97460 1.10085 1.20645 0.93716 0.95623 0.96788 1.21163 0.95838 1.01383 1.07271 1.19439 0.85966 0.92829 0.91139 1.83981 1.18563 1.42428 1.62548 1.21411 0.92472 0.96707 1.36344 0.88832 1.25337 0.95489 0.99165 0.96525 1.70047 1.09782 1.33245 1.36176 0.85622 0.79388 0.79658 0.78626 1.19021 1.20038 1.20052 1.20213 0.95053 0.97614 1.08587 1.20539 0.93556 0.97333 0.95820 1.22380 0.99803 0.98828 0.83804 1.23161 0.80439 1.00913 0.99227 1.88145 1.21759 1.74727 1.42002 0.90312 0.89596 0.89125 0.87123 0.88488 0.76706 0.91791 0.91476 0.87338 0.85372 0.91891 0.86375 0.87050 0.89486 0.88775 0.86234 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 8.80 37.16 0.33 -0.20 16 2 C 0.20 1.43 1.05 -93.48 -0.10 1.33 16 3 C 0.18 1.88 12.35 -20.76 -0.26 1.62 16 4 N -0.40 -5.38 18.54 42.15 0.78 -4.59 16 5 C 0.11 0.86 5.24 -3.75 -0.02 0.84 16 6 N -0.64 -6.15 2.77 -178.26 -0.49 -6.65 16 7 C 0.71 9.40 8.31 -86.92 -0.72 8.68 16 8 O -0.59 -9.89 15.85 5.29 0.08 -9.80 16 9 N -0.74 -9.23 5.46 -66.41 -0.36 -9.59 16 10 C 0.20 2.78 5.80 -5.19 -0.03 2.75 16 11 C -0.22 -3.42 5.25 -104.58 -0.55 -3.97 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.24 -4.81 9.17 -39.40 -0.36 -5.17 16 14 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 15 O -0.17 -4.73 9.76 0.04 0.00 -4.73 16 16 C -0.39 -10.57 9.49 30.89 0.29 -10.27 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -24.45 13.67 55.48 0.76 -23.69 16 20 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 25 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 26 C 0.08 0.51 6.64 -3.53 -0.02 0.49 16 27 C 0.04 0.26 6.69 37.31 0.25 0.51 16 28 O -0.35 -2.48 10.21 -35.23 -0.36 -2.84 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.99 7.10 -51.93 -0.37 0.62 16 33 H 0.10 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.40 4.33 5.98 -40.82 -0.24 4.08 16 35 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.61 5.66 -51.93 -0.29 0.32 16 44 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.49 7.02 -51.93 -0.36 0.13 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -34.25 381.53 -7.19 -41.44 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.62 Total: 5.70 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.71 Total: -5.79 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.68 Total: -44.53 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.28 Total: -17.38 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.25 -7.19 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892712921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.944 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds