Wall clock time and date at job start Wed Apr 1 2020 03:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47195 * 109.51295 * 2 1 4 4 N 2.60796 * 109.51482 * 359.97438 * 2 1 3 5 5 C 1.52874 * 109.58408 * 239.97694 * 2 1 3 6 6 N 1.47156 * 108.60921 * 187.92481 * 5 2 1 7 7 C 1.34776 * 120.98139 * 230.50410 * 6 5 2 8 8 O 1.21582 * 120.00323 * 354.73418 * 7 6 5 9 9 N 1.34773 * 119.99620 * 174.73798 * 7 6 5 10 10 C 1.46504 * 120.00048 * 185.16763 * 9 7 6 11 11 C 1.50701 * 109.47489 * 179.97438 * 10 9 7 12 12 C 1.38296 * 119.92872 * 89.99589 * 11 10 9 13 13 C 1.38104 * 120.06417 * 180.02562 * 12 11 10 14 14 C 1.38874 * 119.93223 * 359.97438 * 13 12 11 15 15 O 1.35751 * 120.06708 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00156 * 5.49261 * 15 14 13 17 17 H 1.07996 * 119.99842 * 354.95002 * 16 15 14 18 18 C 1.38657 * 119.99917 * 174.67176 * 16 15 14 19 19 N 1.31559 * 120.00120 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46972 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46890 * 119.99922 * 20 18 16 23 23 H 1.48501 * 109.47036 * 239.99716 * 20 18 16 24 24 C 1.38876 * 119.86388 * 0.27486 * 14 13 12 25 25 C 1.38103 * 119.92728 * 359.49062 * 24 14 13 26 26 C 1.47153 * 118.03376 * 50.22918 * 6 5 2 27 27 C 1.53299 * 108.38294 * 309.71762 * 26 6 5 28 28 O 1.42959 * 109.50895 * 120.10071 * 2 1 3 29 29 H 1.08997 * 109.47367 * 299.90256 * 1 2 3 30 30 H 1.09003 * 109.46742 * 59.90045 * 1 2 3 31 31 H 1.08996 * 109.47361 * 179.89718 * 1 2 3 32 32 H 1.09002 * 109.61698 * 68.10779 * 5 2 1 33 33 H 1.08999 * 109.52933 * 307.69137 * 5 2 1 34 34 H 0.97004 * 120.00744 * 5.16762 * 9 7 6 35 35 H 1.09004 * 109.46624 * 59.99983 * 10 9 7 36 36 H 1.09001 * 109.47357 * 299.99988 * 10 9 7 37 37 H 1.08000 * 119.96787 * 0.02562 * 12 11 10 38 38 H 1.08002 * 120.03273 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99873 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.03420 * 179.72631 * 24 14 13 41 41 H 1.08003 * 119.96302 * 180.23631 * 25 24 14 42 42 H 1.09004 * 109.68080 * 69.43513 * 26 6 5 43 43 H 1.08995 * 109.68145 * 189.99037 * 26 6 5 44 44 H 1.09003 * 109.50954 * 172.22351 * 27 26 6 45 45 H 1.08999 * 109.51235 * 292.32265 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3874 0.0000 4 7 2.4012 2.4581 -0.0011 5 6 2.0424 -0.7207 -1.2471 6 7 3.5012 -0.8768 -1.1330 7 6 4.3194 -0.5045 -2.1372 8 8 3.8518 -0.1214 -3.1921 9 7 5.6559 -0.5570 -1.9720 10 6 6.5441 -0.0467 -3.0194 11 6 7.9783 -0.2207 -2.5908 12 6 8.6560 -1.3846 -2.9048 13 6 9.9702 -1.5472 -2.5129 14 6 10.6114 -0.5403 -1.8033 15 8 11.9030 -0.6974 -1.4162 16 6 12.5416 -1.8032 -1.8492 17 1 12.0022 -2.5551 -2.4060 18 6 13.8921 -1.9724 -1.5843 19 7 14.5503 -1.0542 -0.9102 20 14 14.7769 -3.5041 -2.1848 21 1 13.8194 -4.3757 -2.9119 22 1 15.8813 -3.1122 -3.0969 23 1 15.3331 -4.2421 -1.0224 24 6 9.9265 0.6252 -1.4850 25 6 8.6139 0.7838 -1.8839 26 6 4.0406 -1.4458 0.1122 27 6 3.4311 -0.6849 1.2952 28 8 2.0074 -0.6758 1.1658 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0276 -0.0018 32 1 1.8044 -0.1325 -2.1334 33 1 1.5728 -1.7016 -1.3198 34 1 6.0299 -0.9325 -1.1596 35 1 6.3404 1.0113 -3.1848 36 1 6.3711 -0.5987 -3.9433 37 1 8.1569 -2.1672 -3.4571 38 1 10.4991 -2.4562 -2.7588 39 1 15.4952 -1.1724 -0.7253 40 1 10.4211 1.4082 -0.9294 41 1 8.0820 1.6916 -1.6400 42 1 3.7754 -2.5011 0.1787 43 1 5.1251 -1.3377 0.1256 44 1 3.7088 -1.1777 2.2270 45 1 3.8036 0.3395 1.3000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892712921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:25 Heat of formation + Delta-G solvation = -51.215881 kcal Electronic energy + Delta-G solvation = -29278.091574 eV Core-core repulsion = 25068.502290 eV Total energy + Delta-G solvation = -4209.589283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.92004 -40.89282 -40.16305 -38.54268 -37.42532 -36.00437 -35.77314 -34.36030 -34.14386 -31.87626 -31.41179 -29.89699 -28.11585 -27.36551 -25.87164 -24.76999 -24.06886 -23.67421 -22.23310 -21.23306 -19.91693 -19.56714 -19.11475 -18.82647 -17.85172 -17.13382 -16.75968 -16.53550 -16.38643 -16.27880 -15.89653 -15.73042 -15.51994 -15.32648 -15.15829 -15.12419 -14.80301 -14.59483 -14.43714 -14.24768 -13.88464 -13.66005 -13.47022 -13.33991 -13.16786 -13.11393 -12.98618 -12.74994 -12.69664 -12.57400 -12.37390 -12.27066 -12.09140 -11.97707 -11.60631 -11.27207 -11.21762 -10.82901 -10.26932 -9.84680 -9.58444 -9.05083 -8.49439 -6.17702 0.48028 0.54626 1.30051 1.35967 1.42741 1.51731 1.53941 1.57978 2.02895 2.16232 2.50414 2.64268 2.70822 2.94523 3.17130 3.42691 3.46356 3.76663 3.81415 3.87823 4.00152 4.06926 4.14257 4.17840 4.37236 4.42274 4.53714 4.62834 4.65237 4.70777 4.77825 4.80014 4.83830 4.87031 5.00725 5.12862 5.23061 5.23771 5.29972 5.39514 5.49233 5.66465 5.72109 5.75569 5.79835 6.00126 6.12431 6.27560 6.82291 6.95475 7.42326 7.74235 8.73496 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.001985 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.072102 B =14104.469306 C =14202.397111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.206 3.794 3 C 0.199 3.801 4 N -0.460 5.460 5 C 0.110 3.890 6 N -0.638 5.638 7 C 0.705 3.295 8 O -0.627 6.627 9 N -0.731 5.731 10 C 0.203 3.797 11 C -0.183 4.183 12 C -0.041 4.041 13 C -0.241 4.241 14 C 0.125 3.875 15 O -0.228 6.228 16 C -0.412 4.412 17 H 0.106 0.894 18 C -0.023 4.023 19 N -0.919 5.919 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.271 1.271 23 H -0.268 1.268 24 C -0.204 4.204 25 C -0.045 4.045 26 C 0.073 3.927 27 C 0.039 3.961 28 O -0.347 6.347 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.406 0.594 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.273 0.727 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.147 0.853 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.358 -5.778 2.955 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 C -0.120 4.120 4 N -0.138 5.138 5 C -0.014 4.014 6 N -0.376 5.376 7 C 0.406 3.594 8 O -0.508 6.508 9 N -0.389 5.389 10 C 0.080 3.920 11 C -0.184 4.184 12 C -0.059 4.059 13 C -0.260 4.260 14 C 0.074 3.926 15 O -0.134 6.134 16 C -0.488 4.488 17 H 0.123 0.877 18 C -0.221 4.221 19 N -0.557 5.557 20 Si 0.838 3.162 21 H -0.172 1.172 22 H -0.196 1.196 23 H -0.193 1.193 24 C -0.224 4.224 25 C -0.063 4.063 26 C -0.049 4.049 27 C -0.038 4.038 28 O -0.263 6.263 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.165 0.835 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -27.871 -3.803 2.550 28.245 hybrid contribution 1.516 -0.422 0.130 1.579 sum -26.355 -4.225 2.680 26.825 Atomic orbital electron populations 1.21905 0.85542 1.06988 1.04858 1.19766 0.98108 0.77726 0.88206 1.30625 0.92645 0.96157 0.92584 1.81213 1.09427 1.14717 1.08449 1.22285 0.78661 1.03621 0.96847 1.47376 1.06693 1.66960 1.16537 1.15972 0.81758 0.78186 0.83461 1.90890 1.76071 1.56176 1.27693 1.45425 1.03612 1.66617 1.23226 1.19719 0.83677 0.98948 0.89674 1.19446 0.95774 0.96193 1.06983 1.20934 0.92272 0.96719 0.96016 1.21252 0.97136 1.00594 1.07047 1.19965 0.85243 0.94677 0.92744 1.83954 1.20725 1.43446 1.65307 1.21887 0.93169 0.97149 1.36610 0.87723 1.26606 0.96111 1.02745 0.96607 1.70189 1.10216 1.36125 1.39140 0.84523 0.78031 0.75388 0.78257 1.17234 1.19617 1.19346 1.20407 0.96265 0.96875 1.08824 1.20821 0.92206 0.98570 0.94745 1.22617 0.99949 1.00043 0.82333 1.23267 0.80165 0.99927 1.00437 1.88173 1.21978 1.74255 1.41896 0.90272 0.88724 0.86504 0.88611 0.85097 0.75611 0.91918 0.90953 0.84049 0.85925 0.91807 0.86851 0.84275 0.86881 0.88580 0.83505 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 8.80 71.98 0.63 0.03 16 2 C 0.21 2.35 1.05 -12.64 -0.01 2.34 16 3 C 0.20 3.98 12.35 89.44 1.10 5.08 16 4 N -0.46 -12.43 18.54 20.00 0.37 -12.05 16 5 C 0.11 1.35 5.24 86.21 0.45 1.80 16 6 N -0.64 -10.49 2.77 -836.15 -2.32 -12.81 16 7 C 0.70 17.07 8.31 179.06 1.49 18.56 16 8 O -0.63 -20.08 15.85 -3.97 -0.06 -20.14 16 9 N -0.73 -16.27 5.46 -482.29 -2.64 -18.91 16 10 C 0.20 5.12 5.80 85.63 0.50 5.62 16 11 C -0.18 -5.27 5.25 -19.84 -0.10 -5.37 16 12 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16 13 C -0.24 -9.68 9.17 22.39 0.21 -9.48 16 14 C 0.12 5.87 6.65 22.58 0.15 6.02 16 15 O -0.23 -13.22 9.76 -22.76 -0.22 -13.45 16 16 C -0.41 -23.09 9.49 67.92 0.64 -22.44 16 17 H 0.11 5.33 5.20 -2.91 -0.02 5.31 16 18 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 19 N -0.92 -55.17 13.67 21.61 0.30 -54.88 16 20 Si 1.02 41.49 29.55 68.60 2.03 43.51 16 21 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 24 C -0.20 -8.23 9.99 22.39 0.22 -8.01 16 25 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 26 C 0.07 0.74 6.64 86.35 0.57 1.31 16 27 C 0.04 0.40 6.69 72.08 0.48 0.88 16 28 O -0.35 -3.80 10.21 -148.98 -1.52 -5.32 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.10 1.53 7.10 -2.39 -0.02 1.51 16 33 H 0.13 0.78 8.13 -2.39 -0.02 0.76 16 34 H 0.41 7.56 5.98 -92.71 -0.55 7.01 16 35 H 0.06 1.66 8.08 -2.38 -0.02 1.64 16 36 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 37 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 41 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 42 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.10 0.94 5.66 -2.39 -0.01 0.92 16 44 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 0.55 7.02 -2.39 -0.02 0.53 16 Total: -1.00 -80.41 381.53 3.66 -76.75 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.49 Total: 24.01 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 7.23 Total: -6.72 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.29 Total: -98.65 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.81 Total: -38.91 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -80.41 3.66 -76.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892712921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.534 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds