Wall clock time and date at job start Wed Apr 1 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38039 * 126.29005 * 2 1 4 4 C 1.47426 * 126.41739 * 359.95283 * 3 2 1 5 5 O 1.21601 * 120.00000 * 48.70163 * 4 3 2 6 6 N 1.34774 * 120.00241 * 228.70032 * 4 3 2 7 7 C 1.47151 * 120.98074 * 355.73586 * 6 4 3 8 8 C 1.53298 * 108.38633 * 129.44386 * 7 6 4 9 9 O 1.42963 * 109.26132 * 52.27634 * 8 7 6 10 10 C 1.42961 * 114.17170 * 297.49984 * 9 8 7 11 11 H 1.08999 * 109.47266 * 302.58263 * 10 9 8 12 12 C 1.50699 * 109.51236 * 182.44740 * 10 9 8 13 13 C 1.34515 * 125.78727 * 144.91802 * 12 10 9 14 14 C 1.41375 * 106.84072 * 179.89277 * 13 12 10 15 15 C 1.34513 * 106.84245 * 0.37482 * 14 13 12 16 16 O 1.34299 * 125.79110 * 325.23646 * 12 10 9 17 17 C 1.47149 * 120.98317 * 175.71725 * 6 4 3 18 18 C 1.41290 * 107.16916 * 180.21808 * 3 2 1 19 19 N 1.30446 * 108.02315 * 359.59069 * 18 3 2 20 20 N 1.34254 * 126.29013 * 179.97438 * 2 1 3 21 21 C 1.46501 * 125.75388 * 0.02562 * 20 2 1 22 22 C 1.50706 * 109.47168 * 90.00188 * 21 20 2 23 23 H 1.07999 * 119.99632 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99906 * 180.02562 * 22 21 20 25 25 N 1.31509 * 120.00114 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99695 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47225 * 89.99727 * 26 24 22 28 28 H 1.48497 * 109.47089 * 209.99417 * 26 24 22 29 29 H 1.48504 * 109.47372 * 329.99832 * 26 24 22 30 30 H 1.09000 * 109.47511 * 90.00159 * 1 2 3 31 31 H 1.08997 * 109.47588 * 210.00294 * 1 2 3 32 32 H 1.09005 * 109.47403 * 330.00237 * 1 2 3 33 33 H 1.09000 * 109.68501 * 9.72070 * 7 6 4 34 34 H 1.09002 * 109.71344 * 249.18635 * 7 6 4 35 35 H 1.08997 * 109.51641 * 172.22865 * 8 7 6 36 36 H 1.09001 * 109.51165 * 292.33096 * 8 7 6 37 37 H 1.07996 * 126.57809 * 0.03268 * 13 12 10 38 38 H 1.08003 * 126.58421 * 180.16891 * 14 13 12 39 39 H 1.08002 * 125.79299 * 179.79212 * 15 14 13 40 40 H 1.08994 * 109.68448 * 350.27499 * 17 6 4 41 41 H 1.09000 * 109.68704 * 110.80068 * 17 6 4 42 42 H 1.07998 * 125.99049 * 179.73304 * 18 3 2 43 43 H 1.09002 * 109.47164 * 209.99523 * 21 20 2 44 44 H 1.08992 * 109.47321 * 329.99852 * 21 20 2 45 45 H 0.97002 * 119.99889 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 -0.0010 5 8 1.0409 2.8946 0.7895 6 7 2.4215 3.3923 -0.8779 7 6 3.5105 2.9863 -1.7805 8 6 3.1310 3.3920 -3.2092 9 8 2.7742 4.7763 -3.2273 10 6 1.6317 5.0968 -2.4300 11 1 0.7789 4.5049 -2.7625 12 6 1.3142 6.5631 -2.5719 13 6 0.0829 7.1048 -2.5738 14 6 0.2495 8.5002 -2.7276 15 6 1.5722 8.7271 -2.8189 16 8 2.2122 7.5501 -2.7240 17 6 1.9346 4.7783 -0.9613 18 6 3.6590 0.6498 -0.0051 19 7 3.6340 -0.6544 0.0009 20 7 2.3016 -1.0821 0.0005 21 6 1.8500 -2.4758 0.0006 22 6 1.6957 -2.9539 -1.4203 23 1 1.9120 -2.2863 -2.2411 24 6 1.2774 -4.2433 -1.6721 25 7 1.0135 -5.0561 -0.6724 26 14 1.0854 -4.8358 -3.4332 27 1 2.3663 -5.4248 -3.8998 28 1 0.0160 -5.8641 -3.4958 29 1 0.7215 -3.6894 -4.3043 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 3.6461 1.9059 -1.7295 34 1 4.4345 3.4863 -1.4901 35 1 3.9798 3.2261 -3.8725 36 1 2.2841 2.7934 -3.5449 37 1 -0.8532 6.5755 -2.4744 38 1 -0.5348 9.2416 -2.7678 39 1 2.0403 9.6920 -2.9466 40 1 1.0266 4.8848 -0.3679 41 1 2.6993 5.4593 -0.5877 42 1 4.5448 1.2676 -0.0105 43 1 2.5845 -3.0957 0.5147 44 1 0.8912 -2.5470 0.5141 45 1 0.7196 -5.9634 -0.8497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896896929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:23 Heat of formation + Delta-G solvation = 0.610924 kcal Electronic energy + Delta-G solvation = -30115.241093 eV Core-core repulsion = 25907.899189 eV Total energy + Delta-G solvation = -4207.341904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.53132 -42.44858 -40.98252 -39.25142 -36.01888 -35.67549 -34.28041 -33.85094 -33.40057 -32.72223 -30.14926 -29.65189 -28.58774 -27.72953 -25.66657 -25.04389 -24.12524 -22.71800 -22.34150 -21.36149 -21.21947 -19.88916 -18.90336 -18.71774 -18.22118 -17.62933 -17.27019 -17.01727 -16.77372 -16.57423 -16.33157 -16.08334 -15.86247 -15.72653 -15.26694 -14.91560 -14.46248 -14.38056 -14.35372 -13.90615 -13.73641 -13.69586 -13.56946 -13.53595 -13.27271 -13.09874 -13.00585 -12.85712 -12.70690 -12.67728 -12.28842 -11.94651 -11.84308 -11.76000 -11.35041 -10.94211 -10.85285 -10.75130 -10.24683 -9.85739 -9.46994 -9.34071 -8.36258 -6.52639 0.68682 0.75455 1.31262 1.39048 1.40394 1.49386 1.55295 1.68063 1.81752 2.09879 2.17359 2.33853 2.53518 2.96306 3.48777 3.60896 3.70413 3.73452 3.84534 3.98267 4.02530 4.13739 4.15366 4.20021 4.26141 4.34588 4.43223 4.48991 4.58474 4.64430 4.73217 4.77952 4.83985 4.88166 4.90855 4.97816 5.00010 5.13436 5.14192 5.32469 5.50812 5.56444 5.64268 5.75929 5.91442 6.04497 6.22083 6.23736 6.56477 6.82093 7.09327 7.18559 8.71663 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002507 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.106696 B =11164.061383 C =11612.353445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.138 3.862 3 C -0.324 4.324 4 C 0.615 3.385 5 O -0.574 6.574 6 N -0.608 5.608 7 C 0.066 3.934 8 C 0.048 3.952 9 O -0.381 6.381 10 C 0.168 3.832 11 H 0.095 0.905 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.226 4.226 15 C -0.035 4.035 16 O -0.181 6.181 17 C 0.096 3.904 18 C 0.076 3.924 19 N -0.330 5.330 20 N -0.335 5.335 21 C 0.267 3.733 22 C -0.551 4.551 23 H 0.057 0.943 24 C 0.022 3.978 25 N -0.919 5.919 26 Si 0.972 3.028 27 H -0.274 1.274 28 H -0.275 1.275 29 H -0.266 1.266 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.056 0.944 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.239 0.761 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.219 0.781 43 H 0.029 0.971 44 H 0.049 0.951 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 24.616 -5.918 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.003 3.997 3 C -0.340 4.340 4 C 0.405 3.595 5 O -0.454 6.454 6 N -0.341 5.341 7 C -0.057 4.057 8 C -0.029 4.029 9 O -0.300 6.300 10 C 0.109 3.891 11 H 0.112 0.888 12 C -0.080 4.080 13 C -0.219 4.219 14 C -0.245 4.245 15 C -0.102 4.102 16 O -0.077 6.077 17 C -0.027 4.027 18 C -0.110 4.110 19 N -0.150 5.150 20 N -0.112 5.112 21 C 0.148 3.852 22 C -0.589 4.589 23 H 0.075 0.925 24 C -0.179 4.179 25 N -0.557 5.557 26 Si 0.795 3.205 27 H -0.199 1.199 28 H -0.200 1.200 29 H -0.190 1.190 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.154 0.846 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.190 0.810 39 H 0.255 0.745 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.235 0.765 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.615 23.448 -5.544 24.149 hybrid contribution -0.836 -0.264 -0.356 0.946 sum 0.779 23.184 -5.900 23.935 Atomic orbital electron populations 1.20549 0.85949 1.04214 1.04177 1.21784 0.95744 0.86431 0.95711 1.19719 0.93683 0.92426 1.28142 1.17273 0.79495 0.83799 0.78956 1.90702 1.35046 1.79365 1.40245 1.47956 1.37584 1.10841 1.37720 1.22816 0.90042 1.03225 0.89577 1.23195 1.02348 0.80971 0.96353 1.88027 1.46978 1.26722 1.68259 1.20708 0.90330 0.87277 0.90775 0.88761 1.21871 0.88162 0.88959 1.08964 1.21897 0.97594 0.95614 1.06798 1.22176 0.97634 0.96127 1.08571 1.24928 0.92537 0.88857 1.03868 1.84065 1.37716 1.15692 1.70247 1.22207 1.02149 0.82137 0.96219 1.24347 0.97169 0.91458 0.98021 1.77116 0.98365 1.14004 1.25549 1.49046 1.03227 1.07672 1.51261 1.19376 0.95195 0.72281 0.98314 1.21386 1.47667 0.98423 0.91450 0.92501 1.25744 0.93914 0.96036 1.02198 1.70003 1.44959 1.07585 1.33118 0.85343 0.78187 0.78278 0.78642 1.19949 1.20000 1.18990 0.89135 0.90694 0.88692 0.87775 0.88195 0.84593 0.92576 0.82118 0.80986 0.74456 0.88409 0.89952 0.76494 0.95248 0.93286 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.10 9.93 71.24 0.71 -2.39 16 2 C 0.14 5.42 7.01 42.14 0.30 5.71 16 3 C -0.32 -11.21 5.16 -20.15 -0.10 -11.32 16 4 C 0.61 19.61 7.35 86.66 0.64 20.25 16 5 O -0.57 -21.38 15.57 -4.03 -0.06 -21.45 16 6 N -0.61 -15.09 3.02 -821.23 -2.48 -17.57 16 7 C 0.07 1.28 5.99 86.35 0.52 1.80 16 8 C 0.05 0.87 6.98 72.08 0.50 1.37 16 9 O -0.38 -8.33 10.35 -144.40 -1.49 -9.82 16 10 C 0.17 3.53 3.24 29.95 0.10 3.63 16 11 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 12 C -0.03 -0.61 6.22 24.83 0.15 -0.45 16 13 C -0.20 -3.63 10.81 22.19 0.24 -3.39 16 14 C -0.23 -3.32 10.91 22.19 0.24 -3.08 16 15 C -0.03 -0.49 12.09 66.97 0.81 0.32 16 16 O -0.18 -3.80 10.63 2.10 0.02 -3.78 16 17 C 0.10 2.15 5.90 86.36 0.51 2.66 16 18 C 0.08 2.48 9.65 85.65 0.83 3.31 16 19 N -0.33 -13.75 12.50 -56.28 -0.70 -14.45 16 20 N -0.33 -14.90 3.56 -336.70 -1.20 -16.10 16 21 C 0.27 13.41 5.97 85.63 0.51 13.92 16 22 C -0.55 -29.17 9.39 25.60 0.24 -28.93 16 23 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 24 C 0.02 1.17 5.46 84.65 0.46 1.63 16 25 N -0.92 -50.54 13.29 21.45 0.28 -50.26 16 26 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 2.60 7.05 -2.39 -0.02 2.58 16 32 H 0.09 3.06 7.06 -2.38 -0.02 3.05 16 33 H 0.10 2.24 4.71 -2.39 -0.01 2.23 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.24 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.10 2.39 7.11 -2.39 -0.02 2.37 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.22 4.99 7.56 -2.91 -0.02 4.97 16 43 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 2.48 7.01 -2.39 -0.02 2.47 16 45 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -69.01 379.60 4.06 -64.95 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.02 Total: 20.16 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.65 Total: 5.05 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.10 Total: -98.38 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.54 Total: -35.05 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -69.01 4.06 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896896929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.562 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds