Wall clock time and date at job start Wed Apr 1 2020 03:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35935 * 117.00011 * 2 1 4 4 C 1.38753 * 119.98845 * 179.97438 * 3 2 1 5 5 C 1.38061 * 120.00842 * 180.02562 * 4 3 2 6 6 C 1.38840 * 119.98577 * 359.97438 * 5 4 3 7 7 N 1.40312 * 120.00395 * 179.97438 * 6 5 4 8 8 N 1.40205 * 126.59881 * 222.02805 * 7 6 5 9 9 N 1.28756 * 108.40180 * 179.76458 * 8 7 6 10 10 C 1.34441 * 109.56790 * 0.38248 * 9 8 7 11 11 C 1.47365 * 125.77963 * 179.87507 * 10 9 8 12 12 O 1.21514 * 119.99927 * 179.69054 * 11 10 9 13 13 O 1.34764 * 119.99818 * 359.69661 * 11 10 9 14 14 C 1.45201 * 116.99785 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.46853 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47072 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47322 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00251 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00151 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99657 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47315 * 90.00151 * 21 19 17 23 23 H 1.48497 * 109.46769 * 210.00164 * 21 19 17 24 24 H 1.48497 * 109.47185 * 329.99700 * 21 19 17 25 25 C 1.35011 * 126.60325 * 42.03173 * 7 6 5 26 26 C 1.50697 * 126.60685 * 359.97438 * 25 7 6 27 27 C 1.38830 * 119.98284 * 0.25035 * 6 5 4 28 28 C 1.38057 * 119.98828 * 359.49507 * 27 6 5 29 29 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47419 * 300.00636 * 1 2 3 31 31 H 1.09000 * 109.46505 * 60.00805 * 1 2 3 32 32 H 1.07999 * 119.99662 * 359.97438 * 4 3 2 33 33 H 1.07994 * 120.00504 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46948 * 299.99669 * 14 13 11 35 35 H 1.09000 * 109.46818 * 59.99855 * 14 13 11 36 36 H 1.08999 * 109.47482 * 299.99843 * 15 14 13 37 37 H 1.09000 * 109.47118 * 60.00540 * 15 14 13 38 38 H 1.09002 * 109.47429 * 300.00290 * 16 15 14 39 39 H 1.09004 * 109.47113 * 60.00365 * 16 15 14 40 40 H 0.96996 * 119.99968 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47443 * 264.66351 * 26 25 7 42 42 H 1.09000 * 109.47300 * 24.66749 * 26 25 7 43 43 H 1.09000 * 109.47358 * 144.66311 * 26 25 7 44 44 H 1.08005 * 120.00394 * 179.72598 * 27 6 5 45 45 H 1.08010 * 119.99250 * 180.22827 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 3.4318 1.2835 0.0005 5 6 4.0590 2.5134 0.0011 6 6 3.3029 3.6779 0.0005 7 7 3.9400 4.9281 0.0016 8 7 3.5737 6.0523 0.7551 9 7 4.3984 7.0051 0.4909 10 6 5.3006 6.5823 -0.4118 11 6 6.4048 7.3846 -0.9673 12 8 7.1656 6.8928 -1.7771 13 8 6.5708 8.6638 -0.5770 14 6 7.6797 9.3937 -1.1651 15 6 7.7070 10.8175 -0.6056 16 6 8.8758 11.5864 -1.2248 17 6 8.9030 12.9886 -0.6733 18 1 8.1607 13.3002 0.0465 19 6 9.8751 13.8740 -1.0885 20 7 9.8986 15.0978 -0.6075 21 14 11.1587 13.3351 -2.3341 22 1 10.6663 13.6178 -3.7061 23 1 12.4211 14.0805 -2.0978 24 1 11.4091 11.8787 -2.1882 25 6 5.0236 5.2801 -0.7227 26 6 5.7822 4.4058 -1.6877 27 6 1.9166 3.6050 0.0047 28 6 1.2903 2.3747 -0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5137 -0.8901 32 1 4.0197 0.3776 0.0014 33 1 5.1375 2.5697 0.0011 34 1 8.6155 8.8899 -0.9231 35 1 7.5566 9.4313 -2.2475 36 1 6.7712 11.3211 -0.8480 37 1 7.8299 10.7802 0.4768 38 1 9.8115 11.0827 -0.9821 39 1 8.7534 11.6238 -2.3073 40 1 10.5826 15.7205 -0.8993 41 1 6.6345 3.9563 -1.1780 42 1 5.1251 3.6195 -2.0593 43 1 6.1358 5.0091 -2.5238 44 1 1.3281 4.5106 0.0088 45 1 0.2117 2.3179 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915403643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:41 Heat of formation + Delta-G solvation = -2.204779 kcal Electronic energy + Delta-G solvation = -28161.103790 eV Core-core repulsion = 23953.639787 eV Total energy + Delta-G solvation = -4207.464002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.83696 -40.85528 -39.99644 -38.42048 -36.56743 -34.88086 -34.00525 -32.97099 -31.89018 -31.76566 -30.00263 -28.70133 -27.83585 -27.42810 -24.53515 -24.23604 -23.32074 -22.60112 -21.37699 -20.69342 -20.15642 -19.02414 -18.66447 -17.24246 -17.01905 -16.83239 -16.54267 -16.45872 -16.22983 -15.85042 -15.37305 -14.74873 -14.58061 -14.36951 -14.19540 -14.16740 -13.81367 -13.57803 -13.49984 -13.27352 -13.03202 -12.72073 -12.67587 -12.37126 -12.30095 -12.10034 -11.88335 -11.76899 -11.43399 -11.02981 -10.92091 -10.90628 -10.69646 -10.41058 -9.99097 -9.88002 -9.77229 -9.69184 -9.57680 -9.20179 -8.79157 -8.52793 -6.02834 -4.01584 0.07221 0.48906 0.98109 1.35702 1.50916 2.50633 2.68881 2.88574 2.91264 3.32717 3.40104 3.43572 3.77298 3.93587 4.01949 4.13042 4.24219 4.41167 4.46479 4.46933 4.48323 4.48994 4.66446 4.81209 4.85305 5.01579 5.08131 5.18706 5.21596 5.30388 5.30522 5.48129 5.48830 5.50543 5.54333 5.64894 5.74144 5.91259 6.21532 6.34854 6.45607 6.58153 6.66116 6.84346 7.26895 7.37632 7.53468 7.76646 7.87601 8.54660 9.02300 9.58613 11.10434 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.039873 B = 0.001569 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.065564 B =17836.841519 C =18365.985173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.142 3.858 4 C -0.133 4.133 5 C -0.071 4.071 6 C 0.087 3.913 7 N -0.313 5.313 8 N -0.058 5.058 9 N -0.168 5.168 10 C -0.083 4.083 11 C 0.554 3.446 12 O -0.507 6.507 13 O -0.335 6.335 14 C 0.066 3.934 15 C -0.102 4.102 16 C -0.010 4.010 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.134 3.866 26 C -0.100 4.100 27 C -0.051 4.051 28 C -0.193 4.193 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 -36.536 -1.014 41.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.224 6.224 3 C 0.096 3.904 4 C -0.153 4.153 5 C -0.091 4.091 6 C -0.004 4.004 7 N -0.092 5.092 8 N -0.037 5.037 9 N -0.042 5.042 10 C -0.219 4.219 11 C 0.396 3.604 12 O -0.395 6.395 13 O -0.249 6.249 14 C -0.007 4.007 15 C -0.140 4.140 16 C -0.047 4.047 17 C -0.559 4.559 18 H 0.093 0.907 19 C -0.134 4.134 20 N -0.541 5.541 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.001 4.001 26 C -0.159 4.159 27 C -0.071 4.071 28 C -0.212 4.212 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.159 0.841 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.863 -36.043 -0.235 41.154 hybrid contribution 1.069 -0.325 -1.267 1.689 sum -18.794 -36.368 -1.502 40.964 Atomic orbital electron populations 1.23177 0.77610 1.04589 1.01802 1.86118 1.22028 1.26317 1.87966 1.19178 0.92393 0.84509 0.94318 1.20296 0.91469 0.98066 1.05429 1.20945 1.00586 0.89841 0.97734 1.17355 0.91906 0.80833 1.10280 1.47482 1.20814 1.11033 1.29880 1.82217 1.19246 0.87417 1.14776 1.74808 1.00282 1.20478 1.08678 1.20080 1.02429 0.92904 1.06510 1.19273 0.81520 0.81188 0.78384 1.90829 1.43983 1.72355 1.32336 1.86658 1.51022 1.22981 1.64266 1.23590 0.86034 0.93055 0.97978 1.21571 1.01493 0.89660 1.01283 1.19521 0.93088 0.96186 0.95947 1.21076 1.14535 0.94185 1.26109 0.90744 1.25014 0.97471 0.94728 0.96179 1.69911 1.34949 1.05100 1.44113 0.86784 0.81306 0.79286 0.81968 1.20240 1.21322 1.18960 1.21929 0.89011 0.94924 0.94259 1.20857 0.99003 0.98523 0.97467 1.20845 0.91901 0.98744 0.95564 1.21188 1.00849 0.91147 1.08034 0.87743 0.92156 0.92193 0.83548 0.83899 0.91252 0.91271 0.91386 0.91358 0.96256 0.96699 0.92689 0.88322 0.90051 0.86928 0.84068 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 101.05 0.99 1.04 16 2 O -0.31 -1.63 10.50 -19.53 -0.21 -1.83 16 3 C 0.14 0.79 6.69 -39.20 -0.26 0.53 16 4 C -0.13 -0.68 9.98 -39.46 -0.39 -1.08 16 5 C -0.07 -0.42 8.36 -39.42 -0.33 -0.75 16 6 C 0.09 0.70 6.13 -83.53 -0.51 0.19 16 7 N -0.31 -3.39 3.71 -6.69 -0.02 -3.41 16 8 N -0.06 -0.80 13.64 60.35 0.82 0.03 16 9 N -0.17 -2.64 12.39 32.84 0.41 -2.23 16 10 C -0.08 -1.20 7.02 -83.56 -0.59 -1.78 16 11 C 0.55 8.89 7.96 34.44 0.27 9.16 16 12 O -0.51 -8.19 14.64 -19.28 -0.28 -8.47 16 13 O -0.33 -5.96 10.23 -40.67 -0.42 -6.37 16 14 C 0.07 1.19 5.48 37.15 0.20 1.39 16 15 C -0.10 -2.11 5.53 -26.73 -0.15 -2.26 16 16 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 17 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 18 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 21 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 C 0.13 1.48 6.84 -81.75 -0.56 0.92 16 26 C -0.10 -0.74 8.18 36.00 0.29 -0.44 16 27 C -0.05 -0.35 9.85 -39.43 -0.39 -0.73 16 28 C -0.19 -0.98 9.03 -39.46 -0.36 -1.34 16 29 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 30 H 0.06 0.07 7.66 -51.93 -0.40 -0.33 16 31 H 0.06 0.06 7.66 -51.93 -0.40 -0.34 16 32 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.14 0.63 7.01 -52.49 -0.37 0.26 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 39 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.10 0.58 8.12 -51.93 -0.42 0.15 16 42 H 0.08 0.41 6.98 -51.93 -0.36 0.05 16 43 H 0.11 0.96 6.74 -51.93 -0.35 0.61 16 44 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 45 H 0.14 0.40 6.29 -52.48 -0.33 0.07 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -35.12 385.65 -6.04 -41.16 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -5.94 Total: -5.51 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -2.32 Total: -9.03 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 1.98 Total: -32.94 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.90 Total: -16.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.12 -6.04 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915403643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.953 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds