Wall clock time and date at job start Wed Apr 1 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35935 * 117.00011 * 2 1 4 4 C 1.38753 * 119.98845 * 179.97438 * 3 2 1 5 5 C 1.38061 * 120.00842 * 180.02562 * 4 3 2 6 6 C 1.38840 * 119.98577 * 359.97438 * 5 4 3 7 7 N 1.40312 * 120.00395 * 179.97438 * 6 5 4 8 8 N 1.40205 * 126.59881 * 222.02805 * 7 6 5 9 9 N 1.28756 * 108.40180 * 179.76458 * 8 7 6 10 10 C 1.34441 * 109.56790 * 0.38248 * 9 8 7 11 11 C 1.47365 * 125.77963 * 179.87507 * 10 9 8 12 12 O 1.21514 * 119.99927 * 179.69054 * 11 10 9 13 13 O 1.34764 * 119.99818 * 359.69661 * 11 10 9 14 14 C 1.45201 * 116.99785 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.46853 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47072 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47322 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00251 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00151 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99657 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47315 * 90.00151 * 21 19 17 23 23 H 1.48497 * 109.46769 * 210.00164 * 21 19 17 24 24 H 1.48497 * 109.47185 * 329.99700 * 21 19 17 25 25 C 1.35011 * 126.60325 * 42.03173 * 7 6 5 26 26 C 1.50697 * 126.60685 * 359.97438 * 25 7 6 27 27 C 1.38830 * 119.98284 * 0.25035 * 6 5 4 28 28 C 1.38057 * 119.98828 * 359.49507 * 27 6 5 29 29 H 1.09001 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47419 * 300.00636 * 1 2 3 31 31 H 1.09000 * 109.46505 * 60.00805 * 1 2 3 32 32 H 1.07999 * 119.99662 * 359.97438 * 4 3 2 33 33 H 1.07994 * 120.00504 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46948 * 299.99669 * 14 13 11 35 35 H 1.09000 * 109.46818 * 59.99855 * 14 13 11 36 36 H 1.08999 * 109.47482 * 299.99843 * 15 14 13 37 37 H 1.09000 * 109.47118 * 60.00540 * 15 14 13 38 38 H 1.09002 * 109.47429 * 300.00290 * 16 15 14 39 39 H 1.09004 * 109.47113 * 60.00365 * 16 15 14 40 40 H 0.96996 * 119.99968 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47443 * 264.66351 * 26 25 7 42 42 H 1.09000 * 109.47300 * 24.66749 * 26 25 7 43 43 H 1.09000 * 109.47358 * 144.66311 * 26 25 7 44 44 H 1.08005 * 120.00394 * 179.72598 * 27 6 5 45 45 H 1.08010 * 119.99250 * 180.22827 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 3.4318 1.2835 0.0005 5 6 4.0590 2.5134 0.0011 6 6 3.3029 3.6779 0.0005 7 7 3.9400 4.9281 0.0016 8 7 3.5737 6.0523 0.7551 9 7 4.3984 7.0051 0.4909 10 6 5.3006 6.5823 -0.4118 11 6 6.4048 7.3846 -0.9673 12 8 7.1656 6.8928 -1.7771 13 8 6.5708 8.6638 -0.5770 14 6 7.6797 9.3937 -1.1651 15 6 7.7070 10.8175 -0.6056 16 6 8.8758 11.5864 -1.2248 17 6 8.9030 12.9886 -0.6733 18 1 8.1607 13.3002 0.0465 19 6 9.8751 13.8740 -1.0885 20 7 9.8986 15.0978 -0.6075 21 14 11.1587 13.3351 -2.3341 22 1 10.6663 13.6178 -3.7061 23 1 12.4211 14.0805 -2.0978 24 1 11.4091 11.8787 -2.1882 25 6 5.0236 5.2801 -0.7227 26 6 5.7822 4.4058 -1.6877 27 6 1.9166 3.6050 0.0047 28 6 1.2903 2.3747 -0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5137 -0.8901 32 1 4.0197 0.3776 0.0014 33 1 5.1375 2.5697 0.0011 34 1 8.6155 8.8899 -0.9231 35 1 7.5566 9.4313 -2.2475 36 1 6.7712 11.3211 -0.8480 37 1 7.8299 10.7802 0.4768 38 1 9.8115 11.0827 -0.9821 39 1 8.7534 11.6238 -2.3073 40 1 10.5826 15.7205 -0.8993 41 1 6.6345 3.9563 -1.1780 42 1 5.1251 3.6195 -2.0593 43 1 6.1358 5.0091 -2.5238 44 1 1.3281 4.5106 0.0088 45 1 0.2117 2.3179 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915403643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:40 Heat of formation + Delta-G solvation = -24.202926 kcal Electronic energy + Delta-G solvation = -28162.057701 eV Core-core repulsion = 23953.639787 eV Total energy + Delta-G solvation = -4208.417914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.74957 -41.39136 -41.13194 -38.88607 -37.89650 -35.96274 -35.58323 -33.90927 -33.68833 -32.32591 -30.61564 -29.73225 -28.94443 -28.13237 -25.73925 -25.05295 -24.22865 -23.68036 -22.15903 -22.05159 -21.59348 -19.75136 -19.22029 -18.99506 -18.02966 -17.99433 -17.64925 -17.38771 -16.76310 -16.68594 -16.28851 -15.82332 -15.62568 -15.50051 -15.00629 -14.82646 -14.80888 -14.67160 -14.40780 -14.10151 -13.97061 -13.84614 -13.77562 -13.56025 -13.24108 -12.94080 -12.84911 -12.63245 -12.58397 -12.43760 -12.14368 -12.02413 -11.96679 -11.74630 -11.62304 -11.53442 -11.39350 -11.34597 -10.75957 -10.52841 -10.28733 -9.28980 -8.28585 -6.34157 -0.59541 0.07636 0.14434 0.39797 0.72153 1.38805 1.40710 1.51774 1.53239 1.76424 2.23086 2.37865 2.40935 2.91975 3.06536 3.25879 3.41284 3.49406 3.63096 3.73993 3.93000 4.02203 4.02895 4.15318 4.26174 4.32688 4.39177 4.40622 4.41988 4.51150 4.60348 4.61798 4.74021 4.75095 4.75727 4.83935 4.95357 4.98107 5.06866 5.14663 5.23854 5.30722 5.47748 5.50510 5.59068 5.63450 6.24762 6.27334 6.43463 6.72373 6.74842 7.30238 8.88278 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.039873 B = 0.001569 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.065564 B =17836.841519 C =18365.985173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.143 3.857 4 C -0.133 4.133 5 C -0.063 4.063 6 C 0.053 3.947 7 N -0.299 5.299 8 N -0.078 5.078 9 N -0.204 5.204 10 C -0.112 4.112 11 C 0.556 3.444 12 O -0.509 6.509 13 O -0.351 6.351 14 C 0.075 3.925 15 C -0.095 4.095 16 C -0.007 4.007 17 C -0.538 4.538 18 H 0.031 0.969 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.953 3.047 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.242 1.242 25 C 0.152 3.848 26 C -0.099 4.099 27 C -0.058 4.058 28 C -0.190 4.190 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.267 0.733 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 -40.604 -2.697 44.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.096 3.904 4 C -0.152 4.152 5 C -0.083 4.083 6 C -0.036 4.036 7 N -0.078 5.078 8 N -0.056 5.056 9 N -0.077 5.077 10 C -0.249 4.249 11 C 0.399 3.601 12 O -0.398 6.398 13 O -0.266 6.266 14 C 0.003 3.997 15 C -0.133 4.133 16 C -0.044 4.044 17 C -0.576 4.576 18 H 0.049 0.951 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.776 3.224 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.166 1.166 25 C 0.015 3.985 26 C -0.156 4.156 27 C -0.077 4.077 28 C -0.209 4.209 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.154 0.846 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.661 -40.147 -1.904 44.744 hybrid contribution 0.786 0.773 -0.664 1.287 sum -18.876 -39.374 -2.568 43.740 Atomic orbital electron populations 1.23456 0.75970 1.06030 1.02692 1.86116 1.23798 1.26073 1.87633 1.19384 0.92820 0.84799 0.93377 1.20556 0.91637 0.98429 1.04589 1.21102 1.01312 0.89131 0.96749 1.17721 0.92594 0.80159 1.13160 1.47602 1.20365 1.11220 1.28601 1.82113 1.19457 0.88289 1.15789 1.74770 1.01241 1.21826 1.09877 1.20100 1.02732 0.94239 1.07860 1.19445 0.81892 0.80489 0.78277 1.90810 1.44271 1.72184 1.32510 1.86630 1.51008 1.24223 1.64778 1.23324 0.86766 0.91399 0.98260 1.21340 0.99833 0.91470 1.00653 1.19434 0.94806 0.93644 0.96522 1.21430 1.13639 0.96993 1.25493 0.95068 1.26046 1.00096 0.94536 0.98561 1.70073 1.36302 1.06705 1.46098 0.85615 0.77797 0.80023 0.78980 1.18981 1.20924 1.16554 1.22402 0.88540 0.93995 0.93525 1.21055 0.99794 0.98437 0.96359 1.20912 0.91630 0.99350 0.95850 1.21371 1.01977 0.90311 1.07209 0.86189 0.91361 0.91181 0.81563 0.82271 0.90139 0.90120 0.92260 0.92266 0.95218 0.95348 0.92409 0.86132 0.87289 0.87785 0.84622 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -2.53 10.50 -92.81 -0.97 -3.50 16 3 C 0.14 1.23 6.69 22.51 0.15 1.38 16 4 C -0.13 -0.98 9.98 22.35 0.22 -0.76 16 5 C -0.06 -0.58 8.36 22.37 0.19 -0.39 16 6 C 0.05 0.78 6.13 38.07 0.23 1.02 16 7 N -0.30 -6.28 3.71 -175.07 -0.65 -6.93 16 8 N -0.08 -2.19 13.64 37.02 0.50 -1.69 16 9 N -0.20 -6.58 12.39 -50.02 -0.62 -7.20 16 10 C -0.11 -3.25 7.02 40.79 0.29 -2.96 16 11 C 0.56 17.66 7.96 70.22 0.56 18.22 16 12 O -0.51 -15.80 14.64 19.79 0.29 -15.51 16 13 O -0.35 -12.54 10.23 -56.75 -0.58 -13.12 16 14 C 0.08 2.63 5.48 71.98 0.39 3.03 16 15 C -0.10 -3.95 5.53 30.59 0.17 -3.79 16 16 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 17 C -0.54 -31.85 9.66 25.60 0.25 -31.61 16 18 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 19 C 0.00 0.26 5.47 84.66 0.46 0.72 16 20 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 21 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 25 C 0.15 3.19 6.84 41.71 0.29 3.48 16 26 C -0.10 -1.20 8.18 71.23 0.58 -0.61 16 27 C -0.06 -0.73 9.85 22.37 0.22 -0.51 16 28 C -0.19 -1.55 9.03 22.35 0.20 -1.35 16 29 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.07 -0.01 7.66 -2.39 -0.02 -0.03 16 31 H 0.07 -0.04 7.66 -2.39 -0.02 -0.06 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.16 0.88 7.01 -2.91 -0.02 0.86 16 34 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 39 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.12 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.11 0.73 6.98 -2.39 -0.02 0.71 16 43 H 0.10 1.55 6.74 -2.39 -0.02 1.53 16 44 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.16 0.53 6.29 -2.91 -0.02 0.51 16 Total: -1.00 -78.52 385.65 6.55 -71.97 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 0.96 Total: 3.37 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 5.44 Total: -13.20 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -0.47 Total: -76.33 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.26 Total: -32.13 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -78.52 6.55 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915403643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.764 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds