Wall clock time and date at job start Wed Apr 1 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38231 * 120.41756 * 2 1 4 4 N 1.31859 * 120.76099 * 179.74986 * 3 2 1 5 5 C 1.31885 * 121.72208 * 0.56668 * 4 3 2 6 6 C 1.50710 * 119.61558 * 179.71105 * 5 4 3 7 7 C 1.52993 * 109.46879 * 269.73054 * 6 5 4 8 8 N 1.46503 * 109.47149 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00142 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00227 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47152 * 34.99791 * 12 11 9 14 14 C 1.50697 * 109.47036 * 154.99631 * 12 11 9 15 15 H 1.07998 * 119.99990 * 84.75538 * 14 12 11 16 16 C 1.37880 * 120.00278 * 264.75466 * 14 12 11 17 17 N 1.31510 * 120.00460 * 184.14817 * 16 14 12 18 18 Si 1.86804 * 119.99827 * 4.42121 * 16 14 12 19 19 H 1.48497 * 109.47229 * 269.77761 * 18 16 14 20 20 H 1.48499 * 109.46840 * 29.77616 * 18 16 14 21 21 H 1.48496 * 109.47128 * 149.77575 * 18 16 14 22 22 C 1.52997 * 109.47159 * 274.99455 * 12 11 9 23 23 F 1.39891 * 109.47237 * 305.14956 * 22 12 11 24 24 F 1.39906 * 109.46874 * 65.14911 * 22 12 11 25 25 F 1.39899 * 109.46935 * 185.14689 * 22 12 11 26 26 C 1.38184 * 120.76765 * 359.43594 * 5 4 3 27 27 C 1.50703 * 120.41845 * 180.29696 * 26 5 4 28 28 C 1.38628 * 120.41760 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47281 * 269.97315 * 1 2 3 30 30 H 1.09005 * 109.47238 * 29.97059 * 1 2 3 31 31 H 1.08995 * 109.47589 * 149.97534 * 1 2 3 32 32 H 1.07993 * 119.62023 * 0.04522 * 3 2 1 33 33 H 1.08993 * 109.46799 * 149.72861 * 6 5 4 34 34 H 1.09002 * 109.46701 * 29.72433 * 6 5 4 35 35 H 1.08996 * 109.47923 * 59.99909 * 7 6 5 36 36 H 1.09004 * 109.47365 * 299.99873 * 7 6 5 37 37 H 0.96996 * 119.99479 * 359.97438 * 8 7 6 38 38 H 0.96997 * 120.00461 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00500 * 180.27171 * 17 16 14 40 40 H 1.08998 * 109.46902 * 89.99779 * 27 26 5 41 41 H 1.08991 * 109.47031 * 209.99826 * 27 26 5 42 42 H 1.09003 * 109.47009 * 330.00280 * 27 26 5 43 43 H 1.07999 * 120.79442 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 0.0049 5 6 4.2256 0.0823 -0.0010 6 6 5.7313 0.1468 -0.0016 7 6 6.2402 0.1691 -1.4442 8 7 7.7039 0.2324 -1.4448 9 6 8.3767 0.2611 -2.6122 10 8 7.7690 0.2341 -3.6650 11 7 9.7232 0.3188 -2.6127 12 6 10.4546 0.3495 -3.8817 13 1 9.8822 0.9146 -4.6174 14 6 11.7940 1.0081 -3.6737 15 1 12.6324 0.4268 -3.3193 16 6 11.9492 2.3528 -3.9358 17 7 13.1359 2.9102 -3.8329 18 14 10.4724 3.3847 -4.4298 19 1 10.3314 3.3714 -5.9080 20 1 9.2458 2.8216 -3.8105 21 1 10.6661 4.7812 -3.9635 22 6 10.6621 -1.0801 -4.3855 23 9 11.2934 -1.8373 -3.3930 24 9 9.4220 -1.6518 -4.6901 25 9 11.4604 -1.0585 -5.5341 26 6 3.5947 -1.1471 -0.0011 27 6 4.4026 -2.4193 -0.0013 28 6 2.2088 -1.1955 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6675 2.1276 0.0007 33 1 6.1325 -0.7269 0.5119 34 1 6.0563 1.0515 0.5123 35 1 5.8390 1.0428 -1.9577 36 1 5.9151 -0.7355 -1.9582 37 1 8.1886 0.2535 -0.6049 38 1 10.2081 0.3400 -1.7728 39 1 13.2444 3.8571 -4.0134 40 1 4.5974 -2.7260 1.0264 41 1 3.8461 -3.2030 -0.5151 42 1 5.3487 -2.2488 -0.5151 43 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932897051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:47 Heat of formation + Delta-G solvation = -170.106262 kcal Electronic energy + Delta-G solvation = -30318.668827 eV Core-core repulsion = 25562.067330 eV Total energy + Delta-G solvation = -4756.601497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.98871 -46.51276 -46.46872 -40.77285 -39.31933 -35.98870 -34.68693 -33.86525 -33.78677 -32.53442 -30.76281 -28.77823 -27.73888 -26.56897 -24.91174 -23.79967 -22.50795 -21.37586 -20.96841 -20.23129 -18.56434 -17.53215 -17.35267 -17.26120 -16.78140 -16.48771 -16.33161 -15.71177 -15.12565 -14.82133 -14.68952 -14.39993 -13.97924 -13.76598 -13.51911 -13.44234 -13.38554 -13.34939 -13.08331 -12.97461 -12.93289 -12.82873 -12.79719 -12.68786 -12.66634 -12.63085 -12.50928 -11.87046 -11.76712 -11.57570 -11.35221 -11.06607 -10.66017 -10.11749 -9.82384 -9.75306 -9.69881 -9.59476 -8.98780 -8.87767 -8.79361 -8.23159 -6.51200 -4.66410 0.79828 1.01983 3.05323 3.20172 3.24795 3.37601 3.49454 3.70207 4.03761 4.07864 4.14415 4.35954 4.44910 4.56589 4.64999 4.70456 4.86851 4.93654 4.97938 5.09839 5.11498 5.17288 5.25263 5.26782 5.32128 5.33447 5.44893 5.48763 5.55214 5.67143 5.73679 5.85733 5.97584 6.03203 6.05626 6.32495 6.46969 6.80068 6.92021 7.25024 7.47792 7.77863 7.94828 8.54001 8.68486 9.05056 9.22073 10.56939 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.002644 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.845785 B =10585.910784 C =11575.717136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.140 4.140 3 C 0.095 3.905 4 N -0.472 5.472 5 C 0.129 3.871 6 C -0.084 4.084 7 C 0.150 3.850 8 N -0.754 5.754 9 C 0.692 3.308 10 O -0.592 6.592 11 N -0.728 5.728 12 C 0.222 3.778 13 H 0.088 0.912 14 C -0.535 4.535 15 H 0.093 0.907 16 C 0.099 3.901 17 N -0.860 5.860 18 Si 0.870 3.130 19 H -0.268 1.268 20 H -0.251 1.251 21 H -0.281 1.281 22 C 0.437 3.563 23 F -0.194 7.194 24 F -0.195 7.195 25 F -0.182 7.182 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.154 0.846 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.002 -7.014 11.084 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.142 4.142 3 C -0.063 4.063 4 N -0.179 5.179 5 C -0.009 4.009 6 C -0.122 4.122 7 C 0.024 3.976 8 N -0.411 5.411 9 C 0.393 3.607 10 O -0.471 6.471 11 N -0.384 5.384 12 C 0.118 3.882 13 H 0.106 0.894 14 C -0.572 4.572 15 H 0.111 0.889 16 C -0.111 4.111 17 N -0.492 5.492 18 Si 0.695 3.305 19 H -0.193 1.193 20 H -0.175 1.175 21 H -0.206 1.206 22 C 0.381 3.619 23 F -0.175 7.175 24 F -0.177 7.177 25 F -0.164 7.164 26 C -0.126 4.126 27 C -0.174 4.174 28 C -0.104 4.104 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.227 0.773 38 H 0.231 0.769 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.982 -6.082 10.062 23.185 hybrid contribution -0.731 -0.367 0.483 0.950 sum -20.713 -6.449 10.545 24.121 Atomic orbital electron populations 1.20709 0.90230 1.03172 1.02501 1.20931 0.97559 0.94203 1.01535 1.22630 0.89654 0.97493 0.96522 1.67494 1.08254 1.30821 1.11345 1.20837 0.95869 0.87943 0.96265 1.20737 0.89221 1.04406 0.97852 1.20939 0.79494 1.02449 0.94693 1.45152 1.06485 1.81814 1.07634 1.16403 0.82797 0.77664 0.83850 1.90883 1.68128 1.57862 1.30191 1.46742 1.03376 1.77526 1.10713 1.19870 0.95573 0.86985 0.85776 0.89420 1.20738 0.92541 0.95547 1.48405 0.88928 1.25002 0.96065 0.97492 0.92504 1.69860 1.22308 1.13030 1.44042 0.86902 0.83626 0.79736 0.80266 1.19320 1.17471 1.20641 1.21769 0.72886 0.91848 0.75422 1.93054 1.82992 1.79286 1.62216 1.93147 1.43563 1.87498 1.93449 1.93105 1.74669 1.96949 1.51667 1.20754 0.94514 0.96537 1.00796 1.20852 1.00166 0.93665 1.02727 1.21368 0.93267 0.98220 0.97582 0.90968 0.91116 0.91363 0.82870 0.89365 0.89165 0.91557 0.91819 0.77272 0.76871 0.91477 0.90722 0.91178 0.90353 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.04 36.00 0.36 -0.23 16 2 C -0.14 -1.19 5.90 -104.48 -0.62 -1.81 16 3 C 0.09 0.95 10.86 -17.54 -0.19 0.76 16 4 N -0.47 -5.85 10.27 -9.47 -0.10 -5.95 16 5 C 0.13 1.47 6.03 -82.58 -0.50 0.97 16 6 C -0.08 -0.87 4.93 -27.88 -0.14 -1.01 16 7 C 0.15 2.06 5.52 -4.04 -0.02 2.04 16 8 N -0.75 -11.33 5.56 -65.23 -0.36 -11.69 16 9 C 0.69 13.98 8.22 -86.92 -0.71 13.26 16 10 O -0.59 -14.23 14.91 5.29 0.08 -14.16 16 11 N -0.73 -14.86 4.91 -59.81 -0.29 -15.15 16 12 C 0.22 5.22 1.54 -69.08 -0.11 5.11 16 13 H 0.09 2.22 5.07 -51.93 -0.26 1.95 16 14 C -0.53 -13.74 8.52 -34.44 -0.29 -14.03 16 15 H 0.09 2.56 8.00 -52.49 -0.42 2.14 16 16 C 0.10 2.63 5.47 -17.82 -0.10 2.53 16 17 N -0.86 -23.79 13.96 55.43 0.77 -23.02 16 18 Si 0.87 20.59 26.95 -169.99 -4.58 16.01 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.25 -6.08 6.94 56.52 0.39 -5.69 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.44 9.97 2.83 37.16 0.11 10.07 16 23 F -0.19 -4.21 16.93 2.25 0.04 -4.17 16 24 F -0.19 -4.46 15.83 2.25 0.04 -4.42 16 25 F -0.18 -4.25 16.89 2.25 0.04 -4.21 16 26 C -0.12 -1.20 5.90 -104.48 -0.62 -1.82 16 27 C -0.12 -0.89 9.21 36.01 0.33 -0.56 16 28 C -0.08 -0.68 9.55 -39.28 -0.37 -1.05 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.09 0.73 6.69 -51.93 -0.35 0.38 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.91 7.41 -51.93 -0.38 0.53 16 37 H 0.39 4.61 8.49 -40.82 -0.35 4.27 16 38 H 0.40 7.08 8.61 -40.82 -0.35 6.73 16 39 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.08 0.65 5.87 -51.93 -0.31 0.35 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -32.46 373.30 -6.97 -39.44 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.36 Total: 7.46 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -2.87 Total: 14.23 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.02 Total: -55.81 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 9 Polarization: -12.92 SS G_CDS: 0.11 Total: -12.80 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.58 Total: 16.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.46 -6.97 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.670 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds