Wall clock time and date at job start Wed Apr 1 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38231 * 120.41756 * 2 1 4 4 N 1.31859 * 120.76099 * 179.74986 * 3 2 1 5 5 C 1.31885 * 121.72208 * 0.56668 * 4 3 2 6 6 C 1.50710 * 119.61558 * 179.71105 * 5 4 3 7 7 C 1.52993 * 109.46879 * 269.73054 * 6 5 4 8 8 N 1.46503 * 109.47149 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00142 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00227 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99732 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47152 * 34.99791 * 12 11 9 14 14 C 1.50697 * 109.47036 * 154.99631 * 12 11 9 15 15 H 1.07998 * 119.99990 * 84.75538 * 14 12 11 16 16 C 1.37880 * 120.00278 * 264.75466 * 14 12 11 17 17 N 1.31510 * 120.00460 * 184.14817 * 16 14 12 18 18 Si 1.86804 * 119.99827 * 4.42121 * 16 14 12 19 19 H 1.48497 * 109.47229 * 269.77761 * 18 16 14 20 20 H 1.48499 * 109.46840 * 29.77616 * 18 16 14 21 21 H 1.48496 * 109.47128 * 149.77575 * 18 16 14 22 22 C 1.52997 * 109.47159 * 274.99455 * 12 11 9 23 23 F 1.39891 * 109.47237 * 305.14956 * 22 12 11 24 24 F 1.39906 * 109.46874 * 65.14911 * 22 12 11 25 25 F 1.39899 * 109.46935 * 185.14689 * 22 12 11 26 26 C 1.38184 * 120.76765 * 359.43594 * 5 4 3 27 27 C 1.50703 * 120.41845 * 180.29696 * 26 5 4 28 28 C 1.38628 * 120.41760 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47281 * 269.97315 * 1 2 3 30 30 H 1.09005 * 109.47238 * 29.97059 * 1 2 3 31 31 H 1.08995 * 109.47589 * 149.97534 * 1 2 3 32 32 H 1.07993 * 119.62023 * 0.04522 * 3 2 1 33 33 H 1.08993 * 109.46799 * 149.72861 * 6 5 4 34 34 H 1.09002 * 109.46701 * 29.72433 * 6 5 4 35 35 H 1.08996 * 109.47923 * 59.99909 * 7 6 5 36 36 H 1.09004 * 109.47365 * 299.99873 * 7 6 5 37 37 H 0.96996 * 119.99479 * 359.97438 * 8 7 6 38 38 H 0.96997 * 120.00461 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00500 * 180.27171 * 17 16 14 40 40 H 1.08998 * 109.46902 * 89.99779 * 27 26 5 41 41 H 1.08991 * 109.47031 * 209.99826 * 27 26 5 42 42 H 1.09003 * 109.47009 * 330.00280 * 27 26 5 43 43 H 1.07999 * 120.79442 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 0.0049 5 6 4.2256 0.0823 -0.0010 6 6 5.7313 0.1468 -0.0016 7 6 6.2402 0.1691 -1.4442 8 7 7.7039 0.2324 -1.4448 9 6 8.3767 0.2611 -2.6122 10 8 7.7690 0.2341 -3.6650 11 7 9.7232 0.3188 -2.6127 12 6 10.4546 0.3495 -3.8817 13 1 9.8822 0.9146 -4.6174 14 6 11.7940 1.0081 -3.6737 15 1 12.6324 0.4268 -3.3193 16 6 11.9492 2.3528 -3.9358 17 7 13.1359 2.9102 -3.8329 18 14 10.4724 3.3847 -4.4298 19 1 10.3314 3.3714 -5.9080 20 1 9.2458 2.8216 -3.8105 21 1 10.6661 4.7812 -3.9635 22 6 10.6621 -1.0801 -4.3855 23 9 11.2934 -1.8373 -3.3930 24 9 9.4220 -1.6518 -4.6901 25 9 11.4604 -1.0585 -5.5341 26 6 3.5947 -1.1471 -0.0011 27 6 4.4026 -2.4193 -0.0013 28 6 2.2088 -1.1955 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6675 2.1276 0.0007 33 1 6.1325 -0.7269 0.5119 34 1 6.0563 1.0515 0.5123 35 1 5.8390 1.0428 -1.9577 36 1 5.9151 -0.7355 -1.9582 37 1 8.1886 0.2535 -0.6049 38 1 10.2081 0.3400 -1.7728 39 1 13.2444 3.8571 -4.0134 40 1 4.5974 -2.7260 1.0264 41 1 3.8461 -3.2030 -0.5151 42 1 5.3487 -2.2488 -0.5151 43 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932897051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:46 Heat of formation + Delta-G solvation = -192.059444 kcal Electronic energy + Delta-G solvation = -30319.620789 eV Core-core repulsion = 25562.067330 eV Total energy + Delta-G solvation = -4757.553459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.83913 -48.34352 -48.33208 -41.51659 -40.89503 -37.22716 -36.31406 -34.87819 -34.55353 -34.44192 -31.91213 -30.32246 -28.32554 -27.40736 -26.86933 -24.73846 -23.44580 -23.00378 -21.96990 -21.59357 -20.33848 -19.34635 -19.03991 -18.59087 -18.36715 -18.00096 -17.46983 -17.00908 -16.42088 -16.17142 -15.77578 -15.35596 -15.31216 -15.24215 -15.10939 -14.97649 -14.87986 -14.78970 -14.53357 -14.47916 -14.44477 -14.03063 -14.01871 -13.84820 -13.61054 -13.52830 -13.33815 -13.21106 -12.99823 -12.75689 -12.61603 -12.37797 -12.11628 -12.00474 -11.80642 -11.40260 -11.00811 -10.48905 -10.38659 -10.35139 -9.80886 -9.57972 -8.55500 -6.73495 0.08783 0.32893 1.24100 1.32784 1.45529 1.66018 1.95547 2.17194 2.30418 2.71080 2.83802 3.14021 3.37276 3.38858 3.46421 3.72109 3.81344 3.86561 3.90538 4.00149 4.06994 4.20661 4.31619 4.39095 4.44880 4.57737 4.75576 4.79235 4.82367 4.84383 4.94136 4.96007 5.01263 5.14256 5.27719 5.31990 5.34670 5.47862 5.52370 5.81270 5.84273 6.15051 6.44355 7.00162 7.04225 7.18915 7.63033 8.56731 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.002644 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.845785 B =10585.910784 C =11575.717136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C 0.073 3.927 4 N -0.505 5.505 5 C 0.102 3.898 6 C -0.070 4.070 7 C 0.156 3.844 8 N -0.732 5.732 9 C 0.690 3.310 10 O -0.631 6.631 11 N -0.724 5.724 12 C 0.230 3.770 13 H 0.073 0.927 14 C -0.533 4.533 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.896 5.896 18 Si 0.922 3.078 19 H -0.269 1.269 20 H -0.260 1.260 21 H -0.271 1.271 22 C 0.439 3.561 23 F -0.186 7.186 24 F -0.193 7.193 25 F -0.186 7.186 26 C -0.128 4.128 27 C -0.115 4.115 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.413 0.587 38 H 0.410 0.590 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.036 -7.914 12.360 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C -0.084 4.084 4 N -0.213 5.213 5 C -0.036 4.036 6 C -0.108 4.108 7 C 0.031 3.969 8 N -0.390 5.390 9 C 0.390 3.610 10 O -0.512 6.512 11 N -0.380 5.380 12 C 0.124 3.876 13 H 0.091 0.909 14 C -0.571 4.571 15 H 0.087 0.913 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.746 3.254 19 H -0.195 1.195 20 H -0.184 1.184 21 H -0.196 1.196 22 C 0.383 3.617 23 F -0.168 7.168 24 F -0.175 7.175 25 F -0.168 7.168 26 C -0.130 4.130 27 C -0.172 4.172 28 C -0.112 4.112 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.250 0.750 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.017 -6.986 11.405 25.761 hybrid contribution -0.195 -0.168 0.126 0.287 sum -22.212 -7.154 11.531 26.029 Atomic orbital electron populations 1.20774 0.87951 1.04106 1.03549 1.21285 0.99207 0.93633 0.99719 1.23000 0.89289 0.98992 0.97106 1.67431 1.09576 1.31860 1.12418 1.20965 0.96048 0.88553 0.98058 1.20627 0.89233 1.05561 0.95386 1.20935 0.78131 1.00931 0.96920 1.44940 1.07110 1.79973 1.06944 1.16470 0.82425 0.77478 0.84598 1.90860 1.68739 1.59559 1.32057 1.46212 1.03772 1.77800 1.10240 1.19557 0.94460 0.87105 0.86482 0.90933 1.20661 0.92824 0.95405 1.48183 0.91303 1.25510 0.97681 0.98382 0.92604 1.69918 1.23725 1.13700 1.45757 0.86101 0.80665 0.78955 0.79690 1.19451 1.18416 1.19550 1.21624 0.72932 0.91707 0.75427 1.93067 1.82835 1.79013 1.61838 1.93151 1.43467 1.87403 1.93445 1.93098 1.74788 1.96967 1.51924 1.21021 0.95364 0.96643 1.00000 1.20888 0.99566 0.93001 1.03775 1.21752 0.93081 0.99404 0.96976 0.89707 0.90401 0.90248 0.81461 0.86874 0.89199 0.94222 0.92287 0.75011 0.75270 0.90984 0.89116 0.90056 0.91194 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.04 71.23 0.72 -0.17 16 2 C -0.14 -2.08 5.90 -19.77 -0.12 -2.19 16 3 C 0.07 1.42 10.86 84.69 0.92 2.34 16 4 N -0.50 -12.40 10.27 -183.87 -1.89 -14.29 16 5 C 0.10 2.22 6.03 42.54 0.26 2.48 16 6 C -0.07 -1.37 4.93 29.85 0.15 -1.22 16 7 C 0.16 4.18 5.52 86.38 0.48 4.66 16 8 N -0.73 -21.01 5.56 -478.54 -2.66 -23.67 16 9 C 0.69 27.23 8.22 179.06 1.47 28.70 16 10 O -0.63 -30.13 14.91 -3.99 -0.06 -30.18 16 11 N -0.72 -28.87 4.91 -461.41 -2.27 -31.13 16 12 C 0.23 10.72 1.54 44.24 0.07 10.78 16 13 H 0.07 3.65 5.07 -2.38 -0.01 3.64 16 14 C -0.53 -27.43 8.52 25.60 0.22 -27.22 16 15 H 0.07 3.85 8.00 -2.91 -0.02 3.82 16 16 C 0.07 3.43 5.47 84.66 0.46 3.89 16 17 N -0.90 -49.80 13.96 21.45 0.30 -49.50 16 18 Si 0.92 42.54 26.95 68.60 1.85 44.38 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.26 -12.30 6.94 99.48 0.69 -11.61 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.44 19.79 2.83 71.98 0.20 19.99 16 23 F -0.19 -7.90 16.93 44.97 0.76 -7.13 16 24 F -0.19 -8.67 15.83 44.97 0.71 -7.96 16 25 F -0.19 -8.62 16.89 44.97 0.76 -7.86 16 26 C -0.13 -2.27 5.90 -19.77 -0.12 -2.39 16 27 C -0.12 -1.49 9.21 71.24 0.66 -0.84 16 28 C -0.09 -1.30 9.55 22.47 0.21 -1.09 16 29 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.08 0.55 8.09 -2.38 -0.02 0.53 16 31 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.11 1.61 6.69 -2.39 -0.02 1.59 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.66 7.41 -2.39 -0.02 1.64 16 37 H 0.41 8.77 8.49 -92.71 -0.79 7.99 16 38 H 0.41 14.11 8.61 -92.71 -0.80 13.32 16 39 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 42 H 0.07 1.03 5.87 -2.39 -0.01 1.01 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -69.87 373.30 2.57 -67.31 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.52 Total: 22.31 kcal Atomic # 6 Polarization: 32.15 SS G_CDS: 5.58 Total: 37.73 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -6.52 Total: -118.60 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.06 Total: -30.18 kcal Atomic # 9 Polarization: -25.18 SS G_CDS: 2.23 Total: -22.95 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.85 Total: 44.38 kcal Total: -69.87 2.57 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.751 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds