Wall clock time and date at job start Wed Apr 1 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.52536 * 2 1 4 4 C 1.53195 * 109.49936 * 120.08195 * 2 1 3 5 5 N 1.46924 * 108.89360 * 174.65724 * 4 2 1 6 6 C 1.36933 * 120.63127 * 126.29882 * 5 4 2 7 7 H 1.07998 * 119.99887 * 331.84628 * 6 5 4 8 8 C 1.38813 * 120.00151 * 151.83748 * 6 5 4 9 9 N 1.31618 * 120.00004 * 343.07604 * 8 6 5 10 10 Si 1.86806 * 119.99953 * 163.07494 * 8 6 5 11 11 H 1.48500 * 109.46925 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46793 * 120.00276 * 10 8 6 13 13 H 1.48498 * 109.46814 * 240.00176 * 10 8 6 14 14 C 1.46928 * 118.73914 * 306.31794 * 5 4 2 15 15 C 1.53195 * 108.77487 * 53.61259 * 14 5 4 16 16 C 1.53040 * 109.31169 * 305.36632 * 15 14 5 17 17 H 1.09010 * 109.45898 * 301.34046 * 16 15 14 18 18 N 1.46499 * 109.46104 * 181.37574 * 16 15 14 19 19 C 1.34776 * 120.00416 * 84.99622 * 18 16 15 20 20 O 1.21276 * 119.99684 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99932 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.35120 * 319.29464 * 21 19 18 23 23 C 1.54070 * 109.35824 * 79.01248 * 21 19 18 24 24 C 1.55560 * 104.31613 * 165.43404 * 23 21 19 25 25 S 1.83455 * 100.68529 * 321.99497 * 24 23 21 26 26 O 1.42101 * 111.24612 * 270.77438 * 25 24 23 27 27 O 1.42094 * 111.24893 * 131.51864 * 25 24 23 28 28 N 1.47065 * 109.35538 * 199.58213 * 21 19 18 29 29 H 1.09004 * 109.47274 * 299.92187 * 1 2 3 30 30 H 1.09010 * 109.47040 * 59.91590 * 1 2 3 31 31 H 1.08993 * 109.47282 * 179.91425 * 1 2 3 32 32 H 1.08996 * 109.47023 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47064 * 300.08426 * 3 2 1 34 34 H 1.09002 * 109.46746 * 60.08108 * 3 2 1 35 35 H 1.09003 * 109.58174 * 54.79619 * 4 2 1 36 36 H 1.08994 * 109.58137 * 294.51770 * 4 2 1 37 37 H 0.96996 * 119.99787 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.58480 * 173.39745 * 14 5 4 39 39 H 1.08996 * 109.58996 * 293.68545 * 14 5 4 40 40 H 1.09000 * 109.50054 * 65.31338 * 15 14 5 41 41 H 1.09000 * 109.49778 * 185.37705 * 15 14 5 42 42 H 0.97007 * 119.99618 * 264.99823 * 18 16 15 43 43 H 1.09002 * 110.46647 * 284.08274 * 23 21 19 44 44 H 1.09005 * 110.46586 * 46.67287 * 23 21 19 45 45 H 1.09001 * 111.14430 * 204.16110 * 24 23 21 46 46 H 1.09004 * 111.26104 * 79.87614 * 24 23 21 47 47 H 0.96996 * 126.30132 * 30.82435 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5048 -0.8291 1.1730 6 6 4.2914 -0.3773 2.1988 7 1 3.9461 0.4286 2.8295 8 6 5.5324 -0.9554 2.4283 9 7 5.8199 -2.1272 1.9025 10 14 6.7944 -0.0700 3.4833 11 1 6.2293 1.2205 3.9526 12 1 7.1395 -0.9142 4.6552 13 1 8.0173 0.1870 2.6811 14 6 4.1083 -1.4278 -0.0254 15 6 3.5766 -0.6974 -1.2626 16 6 2.0465 -0.7255 -1.2484 17 1 1.7025 -1.7598 -1.2351 18 7 1.5349 -0.0564 -2.4470 19 6 1.4083 -0.7429 -3.5999 20 8 1.7183 -1.9145 -3.6451 21 6 0.8825 -0.0544 -4.8330 22 1 0.0586 0.6033 -4.5559 23 6 2.0093 0.7800 -5.4716 24 6 1.4783 1.1187 -6.8940 25 16 0.6301 -0.4504 -7.3230 26 8 1.5193 -1.3599 -7.9567 27 8 -0.6769 -0.2087 -7.8253 28 7 0.4002 -1.0644 -5.7870 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5152 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1313 1.4410 -0.0005 33 1 1.6772 1.9567 -0.8892 34 1 1.6796 1.9558 0.8907 35 1 1.6052 -1.7216 1.2980 36 1 1.7615 -0.1593 2.1389 37 1 6.6872 -2.5309 2.0625 38 1 5.1924 -1.3255 0.0216 39 1 3.8428 -2.4835 -0.0796 40 1 3.9215 0.3366 -1.2509 41 1 3.9418 -1.1925 -2.1623 42 1 1.2873 0.8808 -2.4109 43 1 2.1774 1.6935 -4.9011 44 1 2.9270 0.1953 -5.5358 45 1 2.2989 1.3232 -7.5817 46 1 0.7751 1.9511 -6.8656 47 1 0.0184 -1.9279 -5.5650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941226759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:45 Heat of formation + Delta-G solvation = -78.396649 kcal Electronic energy + Delta-G solvation = -29919.523049 eV Core-core repulsion = 25844.199071 eV Total energy + Delta-G solvation = -4075.323978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.43501 -38.64401 -37.35500 -36.64008 -36.14916 -34.73075 -33.24592 -32.12517 -31.44732 -30.08564 -27.49708 -26.97894 -25.89580 -24.88937 -23.23827 -22.18036 -20.78380 -20.42061 -19.88630 -18.72908 -17.83871 -17.63417 -16.94331 -16.45903 -16.06598 -15.78028 -15.27644 -15.00804 -14.77903 -14.46328 -14.15418 -13.90143 -13.87450 -13.78613 -13.58287 -13.11124 -12.97073 -12.71239 -12.44092 -12.31896 -12.30809 -12.26570 -11.94117 -11.84528 -11.56420 -11.41212 -11.07459 -11.00065 -10.96267 -10.73831 -10.65902 -10.48897 -10.23564 -10.18305 -10.02789 -9.80464 -9.70998 -9.43620 -8.80843 -8.46840 -6.71954 -5.82878 -3.26038 -0.13708 2.14812 2.50084 3.08594 3.22686 3.33642 3.41815 3.43393 3.55777 3.87219 4.02726 4.34470 4.44776 4.48652 4.76251 4.86085 4.98416 4.99148 5.17512 5.21412 5.25653 5.29983 5.38041 5.51701 5.73978 5.80138 5.86436 6.02479 6.06943 6.19492 6.22687 6.33401 6.42843 6.47094 6.59790 6.72505 6.73738 6.77312 6.84774 6.91850 7.31371 7.52317 7.63579 7.75934 8.18743 8.40243 9.16458 9.79697 10.36180 11.25509 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002643 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.176469 B =10591.628239 C =11058.658074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.159 3.841 5 N -0.588 5.588 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.173 3.827 15 C -0.149 4.149 16 C 0.162 3.838 17 H 0.082 0.918 18 N -0.716 5.716 19 C 0.509 3.491 20 O -0.520 6.520 21 C 0.094 3.906 22 H 0.105 0.895 23 C -0.120 4.120 24 C -0.596 4.596 25 S 2.579 3.421 26 O -0.953 6.953 27 O -0.957 6.957 28 N -1.082 6.082 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.254 0.746 38 H 0.089 0.911 39 H 0.020 0.980 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.396 0.604 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 10.494 -14.516 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C -0.188 4.188 4 C 0.032 3.968 5 N -0.310 5.310 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.190 4.190 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.368 5.368 19 C 0.292 3.708 20 O -0.395 6.395 21 C -0.018 4.018 22 H 0.123 0.877 23 C -0.160 4.160 24 C -0.726 4.726 25 S 2.673 3.327 26 O -0.942 6.942 27 O -0.947 6.947 28 N -0.849 5.849 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.231 0.769 43 H 0.138 0.862 44 H 0.123 0.877 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -11.051 9.168 -15.417 21.068 hybrid contribution 0.688 0.907 1.181 1.641 sum -10.363 10.075 -14.236 20.287 Atomic orbital electron populations 1.21799 0.95214 1.01470 1.00937 1.21425 0.94295 0.96735 0.96739 1.21789 1.03153 0.94313 0.99559 1.20903 0.86131 0.96345 0.93442 1.44048 0.99125 1.71220 1.16618 1.19174 0.98478 1.11868 1.08696 0.91634 1.25057 1.00015 0.95311 0.99165 1.70039 1.22087 1.14428 1.47844 0.86260 0.81726 0.79188 0.79798 1.20283 1.21764 1.21599 1.20749 0.99411 0.93114 0.82023 1.22628 0.93695 1.01806 1.00831 1.21135 0.94670 0.96549 0.81722 0.89977 1.46360 1.65739 1.14339 1.10359 1.20204 0.78975 0.87514 0.84155 1.90762 1.48656 1.15848 1.84194 1.21654 0.97848 0.90687 0.91627 0.87710 1.22641 0.98362 1.02009 0.92947 1.30842 1.14583 1.20903 1.06299 1.06133 0.75674 0.77741 0.73181 1.93651 1.66832 1.59770 1.73966 1.93636 1.37362 1.85663 1.78014 1.54968 1.79053 1.27917 1.23005 0.92653 0.93461 0.92941 0.90557 0.94758 0.93080 0.96318 0.92379 0.93617 0.89258 0.96206 0.92106 0.92881 0.76942 0.86215 0.87733 0.83572 0.83662 0.71897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.32 37.15 0.31 -1.32 16 2 C -0.09 -1.31 0.56 -154.23 -0.09 -1.40 16 3 C -0.13 -1.78 7.83 37.16 0.29 -1.49 16 4 C 0.16 3.04 5.18 -3.71 -0.02 3.02 16 5 N -0.59 -13.63 2.44 -172.32 -0.42 -14.05 16 6 C -0.25 -6.51 9.58 -15.06 -0.14 -6.66 16 7 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 9 N -0.90 -25.47 11.20 55.49 0.62 -24.84 16 10 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 15 C -0.15 -2.69 5.31 -26.61 -0.14 -2.83 16 16 C 0.16 2.49 1.58 -67.73 -0.11 2.39 16 17 H 0.08 1.48 7.58 -51.92 -0.39 1.09 16 18 N -0.72 -8.09 4.30 -53.61 -0.23 -8.32 16 19 C 0.51 6.12 7.02 -10.99 -0.08 6.04 16 20 O -0.52 -8.69 16.06 5.56 0.09 -8.60 16 21 C 0.09 0.74 3.41 -68.22 -0.23 0.50 16 22 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 23 C -0.12 -0.67 6.09 -24.81 -0.15 -0.82 16 24 C -0.60 -2.53 7.51 38.52 0.29 -2.25 16 25 S 2.58 22.45 6.49 -107.50 -0.70 21.75 16 26 O -0.95 -12.35 18.14 -57.41 -1.04 -13.39 16 27 O -0.96 -11.10 18.13 -57.41 -1.04 -12.14 16 28 N -1.08 -9.94 6.31 -5.08 -0.03 -9.97 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.47 7.40 -51.92 -0.38 0.09 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.26 5.97 -51.93 -0.31 0.95 16 33 H 0.03 0.35 6.59 -51.93 -0.34 0.01 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.40 3.26 6.68 -40.82 -0.27 2.99 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.15 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.15 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.44 4.20 8.74 -40.34 -0.35 3.85 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -36.29 375.62 -9.61 -45.90 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.31 Total: 2.92 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.18 Total: -0.85 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.06 Total: -57.18 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.99 Total: -34.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 22.45 SS G_CDS: -0.70 Total: 21.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.29 -9.61 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941226759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.498 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds