Wall clock time and date at job start Wed Apr 1 2020 03:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.52536 * 2 1 4 4 C 1.53195 * 109.49936 * 120.08195 * 2 1 3 5 5 N 1.46924 * 108.89360 * 174.65724 * 4 2 1 6 6 C 1.36933 * 120.63127 * 126.29882 * 5 4 2 7 7 H 1.07998 * 119.99887 * 331.84628 * 6 5 4 8 8 C 1.38813 * 120.00151 * 151.83748 * 6 5 4 9 9 N 1.31618 * 120.00004 * 343.07604 * 8 6 5 10 10 Si 1.86806 * 119.99953 * 163.07494 * 8 6 5 11 11 H 1.48500 * 109.46925 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46793 * 120.00276 * 10 8 6 13 13 H 1.48498 * 109.46814 * 240.00176 * 10 8 6 14 14 C 1.46928 * 118.73914 * 306.31794 * 5 4 2 15 15 C 1.53195 * 108.77487 * 53.61259 * 14 5 4 16 16 C 1.53040 * 109.31169 * 305.36632 * 15 14 5 17 17 H 1.09010 * 109.45898 * 301.34046 * 16 15 14 18 18 N 1.46499 * 109.46104 * 181.37574 * 16 15 14 19 19 C 1.34776 * 120.00416 * 84.99622 * 18 16 15 20 20 O 1.21276 * 119.99684 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99932 * 180.02562 * 19 18 16 22 22 H 1.09000 * 109.35120 * 319.29464 * 21 19 18 23 23 C 1.54070 * 109.35824 * 79.01248 * 21 19 18 24 24 C 1.55560 * 104.31613 * 165.43404 * 23 21 19 25 25 S 1.83455 * 100.68529 * 321.99497 * 24 23 21 26 26 O 1.42101 * 111.24612 * 270.77438 * 25 24 23 27 27 O 1.42094 * 111.24893 * 131.51864 * 25 24 23 28 28 N 1.47065 * 109.35538 * 199.58213 * 21 19 18 29 29 H 1.09004 * 109.47274 * 299.92187 * 1 2 3 30 30 H 1.09010 * 109.47040 * 59.91590 * 1 2 3 31 31 H 1.08993 * 109.47282 * 179.91425 * 1 2 3 32 32 H 1.08996 * 109.47023 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47064 * 300.08426 * 3 2 1 34 34 H 1.09002 * 109.46746 * 60.08108 * 3 2 1 35 35 H 1.09003 * 109.58174 * 54.79619 * 4 2 1 36 36 H 1.08994 * 109.58137 * 294.51770 * 4 2 1 37 37 H 0.96996 * 119.99787 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.58480 * 173.39745 * 14 5 4 39 39 H 1.08996 * 109.58996 * 293.68545 * 14 5 4 40 40 H 1.09000 * 109.50054 * 65.31338 * 15 14 5 41 41 H 1.09000 * 109.49778 * 185.37705 * 15 14 5 42 42 H 0.97007 * 119.99618 * 264.99823 * 18 16 15 43 43 H 1.09002 * 110.46647 * 284.08274 * 23 21 19 44 44 H 1.09005 * 110.46586 * 46.67287 * 23 21 19 45 45 H 1.09001 * 111.14430 * 204.16110 * 24 23 21 46 46 H 1.09004 * 111.26104 * 79.87614 * 24 23 21 47 47 H 0.96996 * 126.30132 * 30.82435 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5048 -0.8291 1.1730 6 6 4.2914 -0.3773 2.1988 7 1 3.9461 0.4286 2.8295 8 6 5.5324 -0.9554 2.4283 9 7 5.8199 -2.1272 1.9025 10 14 6.7944 -0.0700 3.4833 11 1 6.2293 1.2205 3.9526 12 1 7.1395 -0.9142 4.6552 13 1 8.0173 0.1870 2.6811 14 6 4.1083 -1.4278 -0.0254 15 6 3.5766 -0.6974 -1.2626 16 6 2.0465 -0.7255 -1.2484 17 1 1.7025 -1.7598 -1.2351 18 7 1.5349 -0.0564 -2.4470 19 6 1.4083 -0.7429 -3.5999 20 8 1.7183 -1.9145 -3.6451 21 6 0.8825 -0.0544 -4.8330 22 1 0.0586 0.6033 -4.5559 23 6 2.0093 0.7800 -5.4716 24 6 1.4783 1.1187 -6.8940 25 16 0.6301 -0.4504 -7.3230 26 8 1.5193 -1.3599 -7.9567 27 8 -0.6769 -0.2087 -7.8253 28 7 0.4002 -1.0644 -5.7870 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5152 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1313 1.4410 -0.0005 33 1 1.6772 1.9567 -0.8892 34 1 1.6796 1.9558 0.8907 35 1 1.6052 -1.7216 1.2980 36 1 1.7615 -0.1593 2.1389 37 1 6.6872 -2.5309 2.0625 38 1 5.1924 -1.3255 0.0216 39 1 3.8428 -2.4835 -0.0796 40 1 3.9215 0.3366 -1.2509 41 1 3.9418 -1.1925 -2.1623 42 1 1.2873 0.8808 -2.4109 43 1 2.1774 1.6935 -4.9011 44 1 2.9270 0.1953 -5.5358 45 1 2.2989 1.3232 -7.5817 46 1 0.7751 1.9511 -6.8656 47 1 0.0184 -1.9279 -5.5650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941226759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:44 Heat of formation + Delta-G solvation = -108.839446 kcal Electronic energy + Delta-G solvation = -29920.843148 eV Core-core repulsion = 25844.199071 eV Total energy + Delta-G solvation = -4076.644077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50577 -39.86007 -38.12268 -37.43861 -36.91351 -36.31287 -34.52561 -33.18691 -32.67072 -31.69612 -28.36747 -28.05798 -27.43988 -26.34762 -24.16916 -23.35925 -22.43354 -21.40808 -20.57181 -19.77329 -18.95179 -18.60164 -18.28267 -17.45956 -17.08469 -16.74134 -16.54487 -16.08750 -15.84961 -15.69138 -15.51539 -15.18391 -14.93782 -14.82526 -14.53176 -14.20543 -14.19417 -13.83951 -13.44747 -13.24785 -13.12876 -13.07323 -13.06419 -12.96996 -12.80294 -12.71190 -12.51193 -12.47488 -12.25906 -12.23462 -12.05558 -11.91926 -11.56838 -11.51905 -11.31968 -11.18976 -10.97075 -10.55299 -10.42102 -9.94654 -8.66582 -7.85145 -5.30878 -0.73216 1.45494 1.47440 1.49657 1.59733 1.64835 2.17331 2.52754 2.65678 2.97975 3.30873 3.39331 3.49337 3.64435 3.72700 3.77979 3.94808 4.01939 4.10725 4.28943 4.39917 4.43593 4.48837 4.66873 4.67969 4.73621 4.82808 4.87274 4.89177 4.93381 4.98866 5.06965 5.08684 5.17704 5.26024 5.33516 5.43944 5.47712 5.58567 5.65681 5.69184 5.79508 6.01766 6.40358 6.61975 7.15749 7.29264 7.87042 8.39818 9.21621 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002643 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.176469 B =10591.628239 C =11058.658074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.153 3.847 5 N -0.601 5.601 6 C -0.251 4.251 7 H 0.073 0.927 8 C -0.055 4.055 9 N -0.940 5.940 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.298 1.298 13 H -0.293 1.293 14 C 0.182 3.818 15 C -0.132 4.132 16 C 0.175 3.825 17 H 0.048 0.952 18 N -0.698 5.698 19 C 0.507 3.493 20 O -0.575 6.575 21 C 0.095 3.905 22 H 0.153 0.847 23 C -0.125 4.125 24 C -0.548 4.548 25 S 2.566 3.434 26 O -1.011 7.011 27 O -0.994 6.994 28 N -1.093 6.093 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.056 0.944 35 H -0.001 1.001 36 H 0.061 0.939 37 H 0.247 0.753 38 H 0.054 0.946 39 H -0.020 1.020 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.418 0.582 43 H 0.163 0.837 44 H 0.087 0.913 45 H 0.171 0.829 46 H 0.187 0.813 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 15.391 -15.121 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.080 4.080 3 C -0.183 4.183 4 C 0.027 3.973 5 N -0.323 5.323 6 C -0.381 4.381 7 H 0.091 0.909 8 C -0.250 4.250 9 N -0.586 5.586 10 Si 0.794 3.206 11 H -0.185 1.185 12 H -0.226 1.226 13 H -0.220 1.220 14 C 0.056 3.944 15 C -0.172 4.172 16 C 0.070 3.930 17 H 0.067 0.933 18 N -0.351 5.351 19 C 0.292 3.708 20 O -0.453 6.453 21 C -0.017 4.017 22 H 0.171 0.829 23 C -0.165 4.165 24 C -0.683 4.683 25 S 2.666 3.334 26 O -1.000 7.000 27 O -0.983 6.983 28 N -0.858 5.858 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.072 0.928 39 H -0.002 1.002 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.257 0.743 43 H 0.181 0.819 44 H 0.106 0.894 45 H 0.189 0.811 46 H 0.205 0.795 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -12.714 14.094 -16.046 24.855 hybrid contribution 1.164 -0.629 1.428 1.947 sum -11.550 13.465 -14.618 22.987 Atomic orbital electron populations 1.21759 0.92328 1.01517 1.03199 1.21241 0.96380 0.96900 0.93449 1.21739 1.01187 0.93254 1.02132 1.21104 0.83694 0.96130 0.96384 1.44236 1.00835 1.71031 1.16235 1.19536 0.98682 1.11306 1.08564 0.90929 1.25829 1.02086 0.95986 1.01077 1.70217 1.22112 1.16225 1.50059 0.85234 0.79134 0.78499 0.77741 1.18478 1.22563 1.21976 1.20449 0.97583 0.91789 0.84596 1.22349 0.95904 1.01456 0.97511 1.20639 0.92562 0.95680 0.84130 0.93332 1.45987 1.65146 1.15168 1.08832 1.21022 0.77623 0.86932 0.85196 1.90759 1.50842 1.18642 1.85100 1.22044 1.00022 0.90527 0.89099 0.82937 1.22865 0.96704 1.03040 0.93907 1.30650 1.15053 1.17086 1.05502 1.06292 0.74982 0.79421 0.72693 1.93581 1.67632 1.63376 1.75404 1.93586 1.39434 1.86556 1.78749 1.55035 1.78959 1.28247 1.23581 0.91389 0.90163 0.94134 0.93564 0.90227 0.92520 0.98260 0.92015 0.94366 0.92764 1.00182 0.90608 0.93755 0.74295 0.81883 0.89417 0.81097 0.79520 0.72678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.32 71.98 0.60 -2.05 16 2 C -0.08 -2.10 0.56 -52.00 -0.03 -2.13 16 3 C -0.13 -2.91 7.83 71.98 0.56 -2.34 16 4 C 0.15 5.87 5.18 86.36 0.45 6.32 16 5 N -0.60 -28.64 2.44 -699.10 -1.70 -30.34 16 6 C -0.25 -13.11 9.58 84.03 0.81 -12.31 16 7 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 8 C -0.05 -3.00 4.92 84.86 0.42 -2.59 16 9 N -0.94 -55.88 11.20 21.65 0.24 -55.63 16 10 Si 0.97 43.87 29.59 68.60 2.03 45.90 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 14 C 0.18 8.84 5.30 86.36 0.46 9.30 16 15 C -0.13 -4.81 5.31 30.67 0.16 -4.65 16 16 C 0.18 5.22 1.58 45.12 0.07 5.29 16 17 H 0.05 1.81 7.58 -2.38 -0.02 1.79 16 18 N -0.70 -13.38 4.30 -441.91 -1.90 -15.28 16 19 C 0.51 11.08 7.02 87.66 0.62 11.69 16 20 O -0.58 -19.52 16.06 -3.02 -0.05 -19.56 16 21 C 0.09 1.11 3.41 44.50 0.15 1.26 16 22 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 23 C -0.13 -0.75 6.09 31.84 0.19 -0.56 16 24 C -0.55 -1.71 7.51 72.86 0.55 -1.16 16 25 S 2.57 41.42 6.49 -56.49 -0.37 41.06 16 26 O -1.01 -26.98 18.14 -127.77 -2.32 -29.30 16 27 O -0.99 -22.13 18.13 -127.77 -2.32 -24.44 16 28 N -1.09 -18.75 6.31 -169.99 -1.07 -19.82 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 1.13 7.40 -2.38 -0.02 1.12 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.38 5.97 -2.39 -0.01 1.37 16 33 H 0.08 1.12 6.59 -2.39 -0.02 1.10 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 37 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.05 2.99 6.06 -2.39 -0.01 2.98 16 39 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.08 2.55 6.34 -2.39 -0.02 2.53 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.42 4.31 6.68 -92.70 -0.62 3.69 16 43 H 0.16 -0.29 8.14 -2.39 -0.02 -0.30 16 44 H 0.09 0.92 8.10 -2.38 -0.02 0.90 16 45 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.19 -0.74 8.14 -2.38 -0.02 -0.76 16 47 H 0.43 8.49 8.74 -93.02 -0.81 7.68 16 Total: -1.00 -88.76 375.62 -2.88 -91.65 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -0.43 Total: 9.71 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.00 Total: 6.07 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -4.43 Total: -121.08 kcal Atomic # 8 Polarization: -68.62 SS G_CDS: -4.68 Total: -73.30 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 41.42 SS G_CDS: -0.37 Total: 41.06 kcal Total: -88.76 -2.88 -91.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941226759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.194 kcal (2) G-P(sol) polarization free energy of solvation -88.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds