Wall clock time and date at job start Wed Apr 1 2020 03:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.52517 * 2 1 4 4 C 1.53194 * 109.48291 * 239.91223 * 2 1 3 5 5 N 1.46933 * 108.76358 * 185.40355 * 4 2 1 6 6 C 1.36936 * 120.62598 * 233.63932 * 5 4 2 7 7 H 1.08002 * 119.99351 * 151.80429 * 6 5 4 8 8 C 1.38806 * 120.00130 * 331.80191 * 6 5 4 9 9 N 1.31610 * 120.00463 * 343.09319 * 8 6 5 10 10 Si 1.86805 * 119.99842 * 163.08712 * 8 6 5 11 11 H 1.48500 * 109.47060 * 89.99812 * 10 8 6 12 12 H 1.48500 * 109.47287 * 210.00148 * 10 8 6 13 13 H 1.48504 * 109.47240 * 330.00270 * 10 8 6 14 14 C 1.46920 * 118.73899 * 53.61348 * 5 4 2 15 15 C 1.53196 * 108.77772 * 306.39353 * 14 5 4 16 16 C 1.53040 * 109.31236 * 54.63770 * 15 14 5 17 17 H 1.09002 * 109.46192 * 58.64030 * 16 15 14 18 18 N 1.46498 * 109.46337 * 178.61554 * 16 15 14 19 19 C 1.34773 * 119.99940 * 275.02565 * 18 16 15 20 20 O 1.21284 * 120.00130 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00045 * 179.97438 * 19 18 16 22 22 H 1.08998 * 109.75522 * 40.72888 * 21 19 18 23 23 C 1.54114 * 109.76767 * 279.99985 * 21 19 18 24 24 C 1.54918 * 105.89700 * 194.68605 * 23 21 19 25 25 S 1.83174 * 102.71280 * 25.16865 * 24 23 21 26 26 O 1.42102 * 111.27309 * 109.61429 * 25 24 23 27 27 O 1.42096 * 111.27691 * 248.81208 * 25 24 23 28 28 N 1.48326 * 109.77506 * 161.28865 * 21 19 18 29 29 H 1.08997 * 109.46933 * 299.92083 * 1 2 3 30 30 H 1.08997 * 109.46897 * 59.91541 * 1 2 3 31 31 H 1.09000 * 109.47315 * 179.91748 * 1 2 3 32 32 H 1.09002 * 109.47220 * 180.08418 * 3 2 1 33 33 H 1.08998 * 109.47093 * 300.08277 * 3 2 1 34 34 H 1.09003 * 109.47289 * 60.08199 * 3 2 1 35 35 H 1.08992 * 109.58646 * 65.62396 * 4 2 1 36 36 H 1.09002 * 109.71431 * 305.25614 * 4 2 1 37 37 H 0.97006 * 120.00642 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.58607 * 186.60639 * 14 5 4 39 39 H 1.08998 * 109.58742 * 66.17881 * 14 5 4 40 40 H 1.08996 * 109.49863 * 294.68601 * 15 14 5 41 41 H 1.09002 * 109.49663 * 174.58276 * 15 14 5 42 42 H 0.96996 * 120.00076 * 95.02089 * 18 16 15 43 43 H 1.09008 * 110.16016 * 75.57935 * 23 21 19 44 44 H 1.09000 * 110.22610 * 313.83318 * 23 21 19 45 45 H 1.09001 * 110.76425 * 266.86246 * 24 23 21 46 46 H 1.09000 * 110.76022 * 143.47847 * 24 23 21 47 47 H 0.96994 * 127.91631 * 343.83288 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0410 -0.7240 -1.2496 5 7 3.5044 -0.8292 -1.1698 6 6 4.2931 -0.3785 -2.1944 7 1 5.2954 -0.0311 -1.9916 8 6 3.8044 -0.3681 -3.4936 9 7 2.7415 -1.0800 -3.8026 10 14 4.6553 0.6567 -4.8033 11 1 5.7023 -0.1601 -5.4681 12 1 3.6583 1.0989 -5.8111 13 1 5.2819 1.8458 -4.1720 14 6 4.1052 -1.4265 0.0305 15 6 3.5708 -0.6948 1.2658 16 6 2.0408 -0.7232 1.2484 17 1 1.6969 -1.7574 1.2352 18 7 1.5265 -0.0530 2.4453 19 6 1.3979 -0.7385 3.5986 20 8 1.7084 -1.9099 3.6456 21 6 0.8694 -0.0490 4.8300 22 1 0.0446 0.6098 4.5580 23 6 1.9944 0.7703 5.4920 24 6 1.4844 1.1213 6.9121 25 16 0.2807 -0.2173 7.2504 26 8 0.7679 -1.1100 8.2429 27 8 -1.0495 0.2813 7.2825 28 7 0.3981 -1.0598 5.8078 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 3.1314 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8892 34 1 1.6797 1.9558 0.8907 35 1 1.7633 -0.1583 -2.1389 36 1 1.6052 -1.7219 -1.3004 37 1 2.4002 -1.0731 -4.7106 38 1 5.1895 -1.3243 -0.0141 39 1 3.8376 -2.4816 0.0867 40 1 3.9157 0.3391 1.2538 41 1 3.9336 -1.1894 2.1669 42 1 1.2786 0.8840 2.4078 43 1 2.1800 1.6816 4.9234 44 1 2.9058 0.1758 5.5562 45 1 0.9921 2.0938 6.9165 46 1 2.3017 1.0975 7.6329 47 1 0.2043 -1.9969 5.6498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941226761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:54 Heat of formation + Delta-G solvation = -78.004343 kcal Electronic energy + Delta-G solvation = -29923.238483 eV Core-core repulsion = 25847.931516 eV Total energy + Delta-G solvation = -4075.306967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.44497 -38.61278 -37.41880 -36.62227 -36.18970 -34.72672 -33.00356 -32.11174 -32.04022 -29.68158 -27.48280 -26.83981 -25.97731 -24.93026 -23.25450 -22.20895 -20.68966 -20.52626 -19.88377 -18.74958 -17.87634 -17.48669 -17.01542 -16.36469 -16.22423 -15.68915 -15.33761 -15.09529 -14.90664 -14.45411 -14.05841 -13.91410 -13.81125 -13.73030 -13.46539 -13.21950 -13.00352 -12.66092 -12.47776 -12.36000 -12.33074 -12.22314 -11.90421 -11.73202 -11.58142 -11.39108 -11.13759 -11.04536 -10.94413 -10.74050 -10.66274 -10.32867 -10.19153 -10.16004 -10.03993 -9.87572 -9.72433 -9.48562 -8.83464 -8.51393 -6.72864 -5.85070 -3.27252 -0.15869 2.11310 2.45143 3.03325 3.24145 3.32758 3.40550 3.41628 3.59993 3.85970 3.99563 4.31811 4.43800 4.44288 4.68550 4.78821 5.02728 5.08996 5.20315 5.21787 5.28669 5.33889 5.47456 5.49819 5.76769 5.84524 5.99512 5.99747 6.10389 6.22259 6.32096 6.36300 6.38849 6.53180 6.61998 6.74536 6.80710 6.82515 6.90270 6.95940 7.24390 7.46688 7.58892 7.74388 8.13099 8.38848 9.15064 9.78193 10.34986 11.23662 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.002486 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.371090 B =11260.177305 C =11372.260982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.127 4.127 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.714 5.714 19 C 0.519 3.481 20 O -0.524 6.524 21 C 0.083 3.917 22 H 0.112 0.888 23 C -0.115 4.115 24 C -0.600 4.600 25 S 2.578 3.422 26 O -0.958 6.958 27 O -0.952 6.952 28 N -1.080 6.080 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.020 0.980 37 H 0.254 0.746 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.397 0.603 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 7.907 18.258 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.184 4.184 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.546 5.546 10 Si 0.729 3.271 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.365 5.365 19 C 0.301 3.699 20 O -0.399 6.399 21 C -0.030 4.030 22 H 0.130 0.870 23 C -0.155 4.155 24 C -0.731 4.731 25 S 2.672 3.328 26 O -0.947 6.947 27 O -0.941 6.941 28 N -0.849 5.849 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.233 0.767 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.162 0.838 46 H 0.164 0.836 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.796 6.846 18.924 20.688 hybrid contribution 0.631 0.890 -1.304 1.700 sum -4.165 7.736 17.620 19.689 Atomic orbital electron populations 1.21771 0.95307 1.01413 1.00761 1.21582 0.94519 0.96849 0.97048 1.21748 1.02644 0.94606 0.99427 1.20820 0.83119 0.96794 0.93288 1.44046 1.01623 1.69206 1.16238 1.19127 0.97969 1.35336 0.85687 0.91734 1.25028 0.98459 0.98957 0.96990 1.70011 1.25630 1.40160 1.18787 0.86348 0.78710 0.80362 0.81648 1.21417 1.21594 1.20504 1.20874 0.96688 0.94284 0.86186 1.22450 0.94596 1.01660 0.99556 1.21085 0.93957 0.96883 0.82171 0.89923 1.46358 1.65385 1.14514 1.10284 1.19888 0.78781 0.87306 0.83884 1.90742 1.49133 1.15814 1.84213 1.22113 0.98116 0.90840 0.91921 0.87032 1.22408 0.98671 1.01885 0.92514 1.30761 1.17822 1.18505 1.05996 1.06166 0.76417 0.76988 0.73247 1.93620 1.81775 1.61335 1.58004 1.93662 1.33448 1.81238 1.85774 1.55394 1.84421 1.20024 1.25016 0.93820 0.92503 0.93026 0.91030 0.92850 0.95185 0.88892 0.96237 0.93583 0.92542 0.96263 0.91730 0.92779 0.76735 0.86817 0.88057 0.83808 0.83644 0.71507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.31 37.16 0.31 -1.59 16 2 C -0.10 -1.57 0.56 -154.39 -0.09 -1.66 16 3 C -0.13 -1.90 7.83 37.15 0.29 -1.61 16 4 C 0.19 4.04 3.98 -3.71 -0.01 4.02 16 5 N -0.59 -13.60 2.43 -172.32 -0.42 -14.02 16 6 C -0.25 -6.47 9.58 -15.06 -0.14 -6.61 16 7 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 8 C 0.00 0.12 4.92 -17.44 -0.09 0.03 16 9 N -0.90 -24.99 11.20 55.49 0.62 -24.37 16 10 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 15 C -0.14 -2.31 5.31 -26.61 -0.14 -2.45 16 16 C 0.16 2.48 1.57 -67.89 -0.11 2.37 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.71 -8.09 4.29 -53.76 -0.23 -8.32 16 19 C 0.52 6.08 7.06 -10.99 -0.08 6.00 16 20 O -0.52 -8.30 15.96 5.55 0.09 -8.22 16 21 C 0.08 0.65 3.29 -67.49 -0.22 0.43 16 22 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 23 C -0.11 -0.61 6.12 -25.14 -0.15 -0.76 16 24 C -0.60 -2.49 7.49 38.17 0.29 -2.20 16 25 S 2.58 21.45 6.39 -107.50 -0.69 20.76 16 26 O -0.96 -11.60 18.14 -57.42 -1.04 -12.64 16 27 O -0.95 -10.82 18.14 -57.42 -1.04 -11.86 16 28 N -1.08 -9.79 6.64 -4.33 -0.03 -9.82 16 29 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.22 5.97 -51.93 -0.31 0.91 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.34 6.58 -51.93 -0.34 -0.01 16 35 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.40 3.43 6.66 -40.82 -0.27 3.16 16 43 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.14 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.15 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.44 4.26 8.55 -40.75 -0.35 3.91 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -35.21 375.37 -9.58 -44.79 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.30 Total: 3.45 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.17 Total: -1.13 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.06 Total: -56.53 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.99 Total: -32.72 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: 21.45 SS G_CDS: -0.69 Total: 20.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.21 -9.58 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941226761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.215 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds