Wall clock time and date at job start Wed Apr 1 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.52517 * 2 1 4 4 C 1.53194 * 109.48291 * 239.91223 * 2 1 3 5 5 N 1.46933 * 108.76358 * 185.40355 * 4 2 1 6 6 C 1.36936 * 120.62598 * 233.63932 * 5 4 2 7 7 H 1.08002 * 119.99351 * 151.80429 * 6 5 4 8 8 C 1.38806 * 120.00130 * 331.80191 * 6 5 4 9 9 N 1.31610 * 120.00463 * 343.09319 * 8 6 5 10 10 Si 1.86805 * 119.99842 * 163.08712 * 8 6 5 11 11 H 1.48500 * 109.47060 * 89.99812 * 10 8 6 12 12 H 1.48500 * 109.47287 * 210.00148 * 10 8 6 13 13 H 1.48504 * 109.47240 * 330.00270 * 10 8 6 14 14 C 1.46920 * 118.73899 * 53.61348 * 5 4 2 15 15 C 1.53196 * 108.77772 * 306.39353 * 14 5 4 16 16 C 1.53040 * 109.31236 * 54.63770 * 15 14 5 17 17 H 1.09002 * 109.46192 * 58.64030 * 16 15 14 18 18 N 1.46498 * 109.46337 * 178.61554 * 16 15 14 19 19 C 1.34773 * 119.99940 * 275.02565 * 18 16 15 20 20 O 1.21284 * 120.00130 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00045 * 179.97438 * 19 18 16 22 22 H 1.08998 * 109.75522 * 40.72888 * 21 19 18 23 23 C 1.54114 * 109.76767 * 279.99985 * 21 19 18 24 24 C 1.54918 * 105.89700 * 194.68605 * 23 21 19 25 25 S 1.83174 * 102.71280 * 25.16865 * 24 23 21 26 26 O 1.42102 * 111.27309 * 109.61429 * 25 24 23 27 27 O 1.42096 * 111.27691 * 248.81208 * 25 24 23 28 28 N 1.48326 * 109.77506 * 161.28865 * 21 19 18 29 29 H 1.08997 * 109.46933 * 299.92083 * 1 2 3 30 30 H 1.08997 * 109.46897 * 59.91541 * 1 2 3 31 31 H 1.09000 * 109.47315 * 179.91748 * 1 2 3 32 32 H 1.09002 * 109.47220 * 180.08418 * 3 2 1 33 33 H 1.08998 * 109.47093 * 300.08277 * 3 2 1 34 34 H 1.09003 * 109.47289 * 60.08199 * 3 2 1 35 35 H 1.08992 * 109.58646 * 65.62396 * 4 2 1 36 36 H 1.09002 * 109.71431 * 305.25614 * 4 2 1 37 37 H 0.97006 * 120.00642 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.58607 * 186.60639 * 14 5 4 39 39 H 1.08998 * 109.58742 * 66.17881 * 14 5 4 40 40 H 1.08996 * 109.49863 * 294.68601 * 15 14 5 41 41 H 1.09002 * 109.49663 * 174.58276 * 15 14 5 42 42 H 0.96996 * 120.00076 * 95.02089 * 18 16 15 43 43 H 1.09008 * 110.16016 * 75.57935 * 23 21 19 44 44 H 1.09000 * 110.22610 * 313.83318 * 23 21 19 45 45 H 1.09001 * 110.76425 * 266.86246 * 24 23 21 46 46 H 1.09000 * 110.76022 * 143.47847 * 24 23 21 47 47 H 0.96994 * 127.91631 * 343.83288 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0410 -0.7240 -1.2496 5 7 3.5044 -0.8292 -1.1698 6 6 4.2931 -0.3785 -2.1944 7 1 5.2954 -0.0311 -1.9916 8 6 3.8044 -0.3681 -3.4936 9 7 2.7415 -1.0800 -3.8026 10 14 4.6553 0.6567 -4.8033 11 1 5.7023 -0.1601 -5.4681 12 1 3.6583 1.0989 -5.8111 13 1 5.2819 1.8458 -4.1720 14 6 4.1052 -1.4265 0.0305 15 6 3.5708 -0.6948 1.2658 16 6 2.0408 -0.7232 1.2484 17 1 1.6969 -1.7574 1.2352 18 7 1.5265 -0.0530 2.4453 19 6 1.3979 -0.7385 3.5986 20 8 1.7084 -1.9099 3.6456 21 6 0.8694 -0.0490 4.8300 22 1 0.0446 0.6098 4.5580 23 6 1.9944 0.7703 5.4920 24 6 1.4844 1.1213 6.9121 25 16 0.2807 -0.2173 7.2504 26 8 0.7679 -1.1100 8.2429 27 8 -1.0495 0.2813 7.2825 28 7 0.3981 -1.0598 5.8078 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 3.1314 1.4410 -0.0015 33 1 1.6773 1.9566 -0.8892 34 1 1.6797 1.9558 0.8907 35 1 1.7633 -0.1583 -2.1389 36 1 1.6052 -1.7219 -1.3004 37 1 2.4002 -1.0731 -4.7106 38 1 5.1895 -1.3243 -0.0141 39 1 3.8376 -2.4816 0.0867 40 1 3.9157 0.3391 1.2538 41 1 3.9336 -1.1894 2.1669 42 1 1.2786 0.8840 2.4078 43 1 2.1800 1.6816 4.9234 44 1 2.9058 0.1758 5.5562 45 1 0.9921 2.0938 6.9165 46 1 2.3017 1.0975 7.6329 47 1 0.2043 -1.9969 5.6498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941226761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:53 Heat of formation + Delta-G solvation = -106.917698 kcal Electronic energy + Delta-G solvation = -29924.492260 eV Core-core repulsion = 25847.931516 eV Total energy + Delta-G solvation = -4076.560744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.50747 -39.84570 -38.16158 -37.37440 -36.92222 -36.25385 -34.28181 -33.80539 -32.58174 -31.27666 -28.35161 -28.06770 -27.57927 -26.38294 -24.20947 -23.33265 -22.26156 -21.45807 -20.59369 -19.80049 -19.12057 -18.52973 -18.11167 -17.31417 -17.12714 -16.78192 -16.48359 -16.15739 -15.93781 -15.67014 -15.40685 -15.13738 -14.93550 -14.89089 -14.51197 -14.24876 -14.19108 -13.83284 -13.45479 -13.25078 -13.23202 -13.09002 -13.01989 -12.94693 -12.85793 -12.66074 -12.57482 -12.41367 -12.30872 -12.28841 -11.90717 -11.79491 -11.61383 -11.54049 -11.28831 -11.17598 -10.90981 -10.54904 -10.51498 -9.96792 -8.65098 -7.84733 -5.29659 -0.72891 1.42837 1.48452 1.50501 1.59365 1.63710 2.13407 2.53443 2.69457 3.02744 3.31051 3.38797 3.46873 3.66801 3.74934 3.82033 3.91974 4.02240 4.14890 4.19595 4.31932 4.39145 4.49183 4.62272 4.70322 4.75248 4.84479 4.87595 4.90686 4.94930 5.00524 5.03253 5.08289 5.15155 5.29383 5.35663 5.39591 5.48265 5.57292 5.64553 5.74913 5.79834 6.06800 6.41773 6.59580 7.17864 7.24601 7.88032 8.40640 9.21817 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.002486 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.371090 B =11260.177305 C =11372.260982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.121 4.121 4 C 0.195 3.805 5 N -0.603 5.603 6 C -0.255 4.255 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.936 5.936 10 Si 0.962 3.038 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.266 1.266 14 C 0.142 3.858 15 C -0.126 4.126 16 C 0.175 3.825 17 H 0.050 0.950 18 N -0.699 5.699 19 C 0.520 3.480 20 O -0.570 6.570 21 C 0.081 3.919 22 H 0.146 0.854 23 C -0.118 4.118 24 C -0.558 4.558 25 S 2.572 3.428 26 O -1.007 7.007 27 O -0.990 6.990 28 N -1.093 6.093 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.061 0.939 36 H -0.020 1.020 37 H 0.249 0.751 38 H 0.057 0.943 39 H -0.001 1.001 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.417 0.583 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.182 0.818 46 H 0.168 0.832 47 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 11.732 20.104 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.178 4.178 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.085 0.915 8 C -0.243 4.243 9 N -0.582 5.582 10 Si 0.791 3.209 11 H -0.218 1.218 12 H -0.221 1.221 13 H -0.191 1.191 14 C 0.016 3.984 15 C -0.166 4.166 16 C 0.070 3.930 17 H 0.068 0.932 18 N -0.352 5.352 19 C 0.305 3.695 20 O -0.448 6.448 21 C -0.030 4.030 22 H 0.164 0.836 23 C -0.157 4.157 24 C -0.693 4.693 25 S 2.671 3.329 26 O -0.997 6.997 27 O -0.979 6.979 28 N -0.859 5.859 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.079 0.921 36 H -0.001 1.001 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.017 0.983 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.256 0.744 43 H 0.171 0.829 44 H 0.113 0.887 45 H 0.199 0.801 46 H 0.186 0.814 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.318 10.685 20.818 23.795 hybrid contribution 0.536 -0.368 -1.890 1.999 sum -3.782 10.317 18.928 21.887 Atomic orbital electron populations 1.21742 0.93497 1.01110 1.02466 1.21334 0.95876 0.97253 0.94488 1.21681 1.01404 0.93359 1.01330 1.20601 0.82541 0.94904 0.95115 1.44273 1.02084 1.69553 1.16612 1.19450 0.98270 1.34330 0.86438 0.91479 1.25740 0.99388 1.00272 0.98942 1.70182 1.27337 1.41964 1.18733 0.85358 0.77376 0.79148 0.79038 1.21752 1.22101 1.19093 1.20982 0.96868 0.93654 0.86944 1.22234 0.95111 1.01868 0.97391 1.20590 0.93333 0.95558 0.83523 0.93158 1.46007 1.65082 1.15222 1.08880 1.20536 0.77554 0.86754 0.84676 1.90740 1.50963 1.18154 1.84989 1.22437 1.00115 0.90690 0.89786 0.83626 1.22605 0.97134 1.02892 0.93114 1.30568 1.16131 1.16878 1.05716 1.06175 0.76670 0.77688 0.72379 1.93557 1.82382 1.63993 1.59735 1.93612 1.36590 1.81662 1.86049 1.55466 1.84628 1.20076 1.25753 0.90006 0.92812 0.94449 0.92860 0.94041 0.90185 0.92058 1.00148 0.94232 0.92448 0.98321 0.90092 0.92064 0.74431 0.82851 0.88714 0.80064 0.81371 0.72359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.31 71.98 0.60 -2.89 16 2 C -0.09 -2.74 0.56 -52.10 -0.03 -2.77 16 3 C -0.12 -3.26 7.83 71.98 0.56 -2.69 16 4 C 0.19 8.79 3.98 86.36 0.34 9.13 16 5 N -0.60 -28.56 2.43 -699.10 -1.70 -30.26 16 6 C -0.25 -13.29 9.58 84.03 0.81 -12.49 16 7 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 8 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 9 N -0.94 -54.00 11.20 21.65 0.24 -53.76 16 10 Si 0.96 43.23 29.59 68.60 2.03 45.26 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 14 C 0.14 5.76 6.52 86.36 0.56 6.33 16 15 C -0.13 -3.92 5.31 30.67 0.16 -3.76 16 16 C 0.18 5.14 1.57 45.02 0.07 5.21 16 17 H 0.05 1.84 7.58 -2.39 -0.02 1.82 16 18 N -0.70 -13.36 4.29 -442.40 -1.90 -15.26 16 19 C 0.52 10.79 7.06 87.66 0.62 11.40 16 20 O -0.57 -17.73 15.96 -3.04 -0.05 -17.78 16 21 C 0.08 0.97 3.29 44.27 0.15 1.11 16 22 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 23 C -0.12 -0.59 6.12 31.63 0.19 -0.39 16 24 C -0.56 -1.60 7.49 72.64 0.54 -1.06 16 25 S 2.57 38.36 6.39 -56.49 -0.36 37.99 16 26 O -1.01 -24.31 18.14 -127.76 -2.32 -26.63 16 27 O -0.99 -21.18 18.14 -127.76 -2.32 -23.50 16 28 N -1.09 -18.28 6.64 -167.62 -1.11 -19.39 16 29 H 0.08 1.56 7.36 -2.39 -0.02 1.54 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.66 5.97 -2.39 -0.01 1.65 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.35 6.58 -2.39 -0.02 1.33 16 35 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16 36 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 37 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 38 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.08 2.30 6.33 -2.39 -0.02 2.28 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.42 4.76 6.66 -92.71 -0.62 4.15 16 43 H 0.15 -0.30 8.14 -2.38 -0.02 -0.32 16 44 H 0.09 0.70 8.10 -2.39 -0.02 0.68 16 45 H 0.18 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.44 8.50 8.55 -92.76 -0.79 7.71 16 Total: -1.00 -83.70 375.37 -2.90 -86.59 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -0.41 Total: 11.76 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.00 Total: 4.97 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -4.47 Total: -118.67 kcal Atomic # 8 Polarization: -63.23 SS G_CDS: -4.68 Total: -67.91 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 38.36 SS G_CDS: -0.36 Total: 37.99 kcal Total: -83.70 -2.90 -86.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941226761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.323 kcal (2) G-P(sol) polarization free energy of solvation -83.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds