Wall clock time and date at job start Wed Apr 1 2020 03:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30025 * 124.84008 * 2 1 4 4 C 1.35840 * 108.85977 * 179.97438 * 3 2 1 5 5 C 1.39840 * 133.62809 * 180.02562 * 4 3 2 6 6 C 1.36282 * 120.04057 * 179.97438 * 5 4 3 7 7 C 1.40097 * 120.41618 * 0.02562 * 6 5 4 8 8 C 1.47632 * 119.92794 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00040 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99691 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99538 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47149 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.77535 * 51.76040 * 12 11 10 14 14 C 1.54315 * 110.71722 * 288.52141 * 12 11 10 15 15 N 1.47023 * 107.27241 * 219.44307 * 14 12 11 16 16 C 1.36933 * 125.65507 * 178.99274 * 15 14 12 17 17 H 1.08004 * 119.99383 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00263 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00277 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99805 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47332 * 120.00014 * 20 18 16 23 23 H 1.48503 * 109.47041 * 239.99753 * 20 18 16 24 24 C 1.47426 * 108.69981 * 358.93706 * 15 14 12 25 25 C 1.54907 * 104.82942 * 24.13288 * 24 15 14 26 26 H 1.09005 * 111.04094 * 81.08152 * 25 24 15 27 27 O 1.42903 * 111.00431 * 204.90944 * 25 24 15 28 28 C 1.39434 * 120.14683 * 0.26666 * 7 6 5 29 29 C 1.38292 * 119.61508 * 359.44179 * 28 7 6 30 30 O 1.34145 * 124.84478 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46866 * 90.02795 * 1 2 3 32 32 H 1.09008 * 109.47047 * 210.02483 * 1 2 3 33 33 H 1.08995 * 109.47444 * 330.02072 * 1 2 3 34 34 H 1.07998 * 119.97857 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.79377 * 180.02562 * 6 5 4 36 36 H 0.96993 * 120.00285 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47659 * 59.99915 * 11 10 8 38 38 H 1.09007 * 109.46961 * 299.99408 * 11 10 8 39 39 H 1.09003 * 109.88697 * 338.85781 * 14 12 11 40 40 H 1.09000 * 109.88663 * 100.02422 * 14 12 11 41 41 H 0.96999 * 120.00355 * 179.97438 * 19 18 16 42 42 H 1.08994 * 110.37345 * 265.29076 * 24 15 14 43 43 H 1.09007 * 110.36591 * 142.96519 * 24 15 14 44 44 H 0.96700 * 114.00311 * 292.19952 * 27 25 24 45 45 H 1.07996 * 120.19499 * 179.72671 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2498 1.0672 0.0000 4 6 3.5557 0.6932 0.0006 5 6 4.7619 1.4007 0.0013 6 6 5.9472 0.7282 0.0023 7 6 5.9680 -0.6726 0.0021 8 6 7.2582 -1.3902 0.0037 9 8 7.2777 -2.6058 0.0040 10 7 8.4144 -0.6976 0.0049 11 6 9.6947 -1.4096 0.0060 12 6 10.8416 -0.3968 0.0066 13 1 10.7133 0.3321 0.8068 14 6 10.9483 0.3079 -1.3621 15 7 12.3790 0.4533 -1.6679 16 6 12.8995 1.0127 -2.8042 17 1 12.2395 1.3931 -3.5699 18 6 14.2752 1.0907 -2.9721 19 7 15.0794 0.6275 -2.0388 20 14 14.9851 1.8532 -4.5227 21 1 13.8783 2.2937 -5.4092 22 1 15.8245 3.0231 -4.1594 23 1 15.8170 0.8483 -5.2322 24 6 13.1605 -0.1018 -0.5478 25 6 12.2099 -1.1170 0.1342 26 1 12.2029 -2.0669 -0.4004 27 8 12.5626 -1.3073 1.5059 28 6 4.7728 -1.3907 -0.0048 29 6 3.5678 -0.7121 0.0003 30 8 2.2734 -1.1009 0.0005 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8901 0.5135 34 1 4.7541 2.4806 0.0011 35 1 6.8765 1.2786 0.0032 36 1 8.3988 0.2722 0.0043 37 1 9.7634 -2.0352 -0.8840 38 1 9.7617 -2.0354 0.8960 39 1 10.4649 -0.2970 -2.1293 40 1 10.4785 1.2901 -1.3110 41 1 16.0407 0.6817 -2.1563 42 1 13.4362 0.6882 0.1507 43 1 14.0512 -0.6075 -0.9207 44 1 13.4105 -1.7537 1.6358 45 1 4.7879 -2.4705 -0.0094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958158632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:02 Heat of formation + Delta-G solvation = -43.387637 kcal Electronic energy + Delta-G solvation = -28982.845010 eV Core-core repulsion = 24773.595184 eV Total energy + Delta-G solvation = -4209.249825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.43441 -41.25482 -39.86735 -38.66450 -36.64547 -36.21465 -35.99894 -34.11259 -32.81021 -31.94919 -31.46653 -29.67686 -28.97471 -27.20970 -25.46624 -24.61998 -23.79765 -22.82469 -22.36026 -21.71969 -21.22295 -19.53677 -18.88069 -18.73864 -18.37048 -18.04063 -17.61226 -17.00995 -16.98716 -16.47990 -15.87045 -15.69495 -15.46065 -15.30883 -14.92408 -14.75351 -14.73711 -14.44210 -14.26298 -14.06605 -14.01754 -13.64963 -13.55881 -13.30260 -13.24553 -13.09255 -12.78985 -12.71964 -12.39276 -12.33886 -12.26666 -11.89869 -11.83484 -11.70348 -11.45492 -11.16996 -10.80721 -10.73266 -10.25081 -10.06918 -9.60419 -8.91011 -7.79310 -5.24036 -0.81202 0.00307 0.99600 1.25434 1.48023 1.48351 1.58566 1.77377 2.04414 2.47895 2.57720 2.71230 3.20691 3.28310 3.31750 3.52159 3.61316 3.75075 3.83904 3.85973 3.89373 3.94299 4.12913 4.19193 4.44354 4.47096 4.55001 4.60993 4.62609 4.64432 4.74316 4.80205 4.86207 4.90382 4.98222 4.99995 5.06518 5.16978 5.22781 5.33688 5.40703 5.44590 5.50057 5.75324 6.25882 6.40337 6.41852 6.89675 7.05091 7.08595 7.75062 8.37316 9.22705 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.002027 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.621554 B =13807.899167 C =14876.608325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.263 3.737 3 N -0.513 5.513 4 C 0.033 3.967 5 C -0.069 4.069 6 C -0.073 4.073 7 C -0.118 4.118 8 C 0.563 3.437 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.146 3.854 12 C -0.088 4.088 13 H 0.097 0.903 14 C 0.137 3.863 15 N -0.624 5.624 16 C -0.235 4.235 17 H 0.085 0.915 18 C -0.068 4.068 19 N -0.949 5.949 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.133 3.867 25 C 0.096 3.904 26 H 0.067 0.933 27 O -0.569 6.569 28 C -0.032 4.032 29 C -0.024 4.024 30 O -0.219 6.219 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.247 0.753 42 H -0.007 1.007 43 H 0.078 0.922 44 H 0.394 0.606 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.730 -0.986 6.648 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 N -0.244 5.244 4 C -0.079 4.079 5 C -0.088 4.088 6 C -0.093 4.093 7 C -0.121 4.121 8 C 0.351 3.649 9 O -0.455 6.455 10 N -0.356 5.356 11 C 0.022 3.978 12 C -0.107 4.107 13 H 0.115 0.885 14 C 0.013 3.987 15 N -0.351 5.351 16 C -0.364 4.364 17 H 0.103 0.897 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.808 3.192 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.007 3.993 25 C 0.035 3.965 26 H 0.085 0.915 27 O -0.376 6.376 28 C -0.052 4.052 29 C -0.074 4.074 30 O -0.111 6.111 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.011 0.989 43 H 0.096 0.904 44 H 0.243 0.757 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -27.305 -0.885 6.647 28.117 hybrid contribution 1.718 -0.222 -0.851 1.930 sum -25.587 -1.107 5.796 26.259 Atomic orbital electron populations 1.20838 0.76870 1.07435 1.07102 1.27780 0.98437 0.77298 0.91208 1.70682 1.00908 1.29839 1.22945 1.20454 0.93223 0.91383 1.02820 1.20266 0.87586 1.01813 0.99116 1.21191 0.99664 0.91803 0.96637 1.19562 0.91589 0.94382 1.06573 1.18142 0.84141 0.86589 0.75992 1.90780 1.88055 1.14931 1.51725 1.45767 1.04824 1.11248 1.73796 1.21226 0.80430 0.93847 1.02309 1.22244 0.92886 0.97485 0.98080 0.88504 1.21571 0.85667 0.97820 0.93685 1.44601 1.01386 1.70594 1.18493 1.19502 0.90809 1.30934 0.95188 0.89705 1.25621 0.96429 1.02538 1.01423 1.70008 1.02336 1.52792 1.34747 0.84991 0.78166 0.77156 0.78901 1.19012 1.22083 1.21967 1.22313 0.95382 0.93636 0.87936 1.22988 0.94170 0.97177 0.82145 0.91489 1.86340 1.44022 1.82948 1.24265 1.19873 0.86576 1.01053 0.97696 1.20141 0.84182 0.94720 1.08334 1.84507 1.15056 1.37035 1.74532 0.86085 0.86646 0.86098 0.81641 0.81130 0.74672 0.91750 0.90810 0.94859 0.94172 0.94295 0.98902 0.90448 0.75651 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.51 71.23 0.75 0.47 16 2 C 0.26 4.30 8.23 88.37 0.73 5.03 16 3 N -0.51 -10.86 11.33 -296.03 -3.35 -14.22 16 4 C 0.03 0.74 7.24 39.47 0.29 1.03 16 5 C -0.07 -1.21 10.03 22.20 0.22 -0.99 16 6 C -0.07 -1.21 9.46 22.26 0.21 -1.00 16 7 C -0.12 -2.59 5.88 -20.06 -0.12 -2.70 16 8 C 0.56 14.81 7.76 86.72 0.67 15.48 16 9 O -0.57 -19.40 16.32 -3.97 -0.06 -19.47 16 10 N -0.70 -16.31 5.42 -466.16 -2.53 -18.84 16 11 C 0.15 4.02 5.02 86.38 0.43 4.45 16 12 C -0.09 -2.75 2.70 -9.61 -0.03 -2.77 16 13 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 14 C 0.14 5.11 6.75 86.73 0.59 5.70 16 15 N -0.62 -30.54 3.39 -692.00 -2.35 -32.89 16 16 C -0.24 -12.70 10.27 84.03 0.86 -11.84 16 17 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 19 N -0.95 -54.97 10.09 21.65 0.22 -54.75 16 20 Si 0.98 44.59 29.55 68.60 2.03 46.62 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.13 6.28 5.62 86.85 0.49 6.77 16 25 C 0.10 3.44 3.88 31.98 0.12 3.56 16 26 H 0.07 2.35 8.05 -2.38 -0.02 2.33 16 27 O -0.57 -18.21 13.47 -148.98 -2.01 -20.21 16 28 C -0.03 -0.75 9.60 22.57 0.22 -0.53 16 29 C -0.02 -0.55 7.42 22.84 0.17 -0.38 16 30 O -0.22 -4.55 10.77 -9.60 -0.10 -4.66 16 31 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.17 1.76 6.37 -2.91 -0.02 1.74 16 36 H 0.42 7.30 6.47 -92.71 -0.60 6.70 16 37 H 0.06 1.93 7.93 -2.39 -0.02 1.91 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.03 1.23 7.68 -2.39 -0.02 1.21 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.08 4.15 5.88 -2.38 -0.01 4.14 16 44 H 0.39 9.74 9.12 -74.06 -0.68 9.07 16 45 H 0.14 3.41 7.63 -2.91 -0.02 3.38 16 Total: -1.00 -76.81 377.85 -2.31 -79.11 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.22 Total: 20.30 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.07 Total: 19.01 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -8.01 Total: -120.70 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -2.18 Total: -44.34 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.81 -2.31 -79.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958158632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.725 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds