Wall clock time and date at job start Wed Apr 1 2020 03:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29877 * 124.82931 * 2 1 4 4 C 1.36123 * 108.76368 * 179.97438 * 3 2 1 5 5 C 1.39272 * 133.76503 * 180.02562 * 4 3 2 6 6 C 1.39189 * 119.46697 * 180.02562 * 5 4 3 7 7 C 1.47719 * 119.95288 * 180.27882 * 6 5 4 8 8 O 1.21574 * 119.99739 * 359.72175 * 7 6 5 9 9 N 1.34769 * 120.00246 * 179.72684 * 7 6 5 10 10 C 1.46506 * 120.00188 * 180.02562 * 9 7 6 11 11 C 1.52988 * 109.47393 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88791 * 51.11502 * 11 10 9 13 13 C 1.54912 * 111.00348 * 287.19306 * 11 10 9 14 14 N 1.47424 * 104.83518 * 204.91510 * 13 11 10 15 15 C 1.36936 * 125.65241 * 204.14848 * 14 13 11 16 16 H 1.07998 * 119.99806 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00205 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99661 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99937 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47125 * 60.00236 * 19 17 15 21 21 H 1.48505 * 109.46969 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47120 * 300.00260 * 19 17 15 23 23 C 1.47026 * 108.70071 * 24.13115 * 14 13 11 24 24 C 1.54324 * 107.26933 * 358.93570 * 23 14 13 25 25 H 1.09006 * 110.86765 * 96.24539 * 24 23 14 26 26 O 1.42902 * 110.71886 * 219.44290 * 24 23 14 27 27 C 1.40055 * 120.09662 * 0.02562 * 6 5 4 28 28 C 1.36518 * 120.47629 * 359.97438 * 27 6 5 29 29 C 1.38900 * 120.18924 * 359.97438 * 28 27 6 30 30 O 1.34240 * 124.83899 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47303 * 299.99360 * 1 2 3 33 33 H 1.08996 * 109.47725 * 60.00069 * 1 2 3 34 34 H 1.07998 * 120.26396 * 359.97438 * 5 4 3 35 35 H 0.97001 * 120.00385 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.46807 * 299.99980 * 10 9 7 37 37 H 1.08997 * 109.46911 * 59.99134 * 10 9 7 38 38 H 1.08999 * 110.36656 * 323.75516 * 13 11 10 39 39 H 1.09000 * 110.36805 * 86.07987 * 13 11 10 40 40 H 0.96995 * 119.99401 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.87900 * 239.52129 * 23 14 13 42 42 H 1.08999 * 110.01605 * 118.42952 * 23 14 13 43 43 H 0.96694 * 114.00206 * 293.52596 * 26 24 23 44 44 H 1.08004 * 119.75930 * 179.97438 * 27 6 5 45 45 H 1.08003 * 119.90604 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2487 1.0661 0.0000 4 6 3.5568 0.6894 0.0006 5 6 4.7608 1.3893 0.0013 6 6 5.9618 0.6857 0.0012 7 6 7.2451 1.4172 0.0082 8 8 7.2518 2.6330 0.0089 9 7 8.4085 0.7370 0.0137 10 6 9.6813 1.4625 0.0212 11 6 10.8387 0.4620 0.0270 12 1 10.7190 -0.2753 -0.7669 13 6 10.9715 -0.2254 1.4089 14 7 12.3828 -0.6443 1.4880 15 6 12.8713 -1.6607 2.2648 16 1 12.2014 -2.2321 2.8902 17 6 14.2276 -1.9560 2.2492 18 7 15.0441 -1.2586 1.4880 19 14 14.8940 -3.3420 3.3094 20 1 14.2443 -4.6194 2.9200 21 1 16.3617 -3.4538 3.1129 22 1 14.6056 -3.0553 4.7376 23 6 13.1788 0.2097 0.5943 24 6 12.2037 1.1898 -0.0913 25 1 12.1787 2.1443 0.4348 26 8 12.5585 1.3796 -1.4625 27 6 5.9553 -0.7148 -0.0001 28 6 4.7755 -1.4017 -0.0008 29 6 3.5678 -0.7156 0.0003 30 8 2.2738 -1.1018 0.0005 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 4.7626 2.4693 0.0011 35 1 8.4033 -0.2330 0.0134 36 1 9.7472 2.0897 -0.8679 37 1 9.7377 2.0880 0.9120 38 1 10.7398 0.4797 2.2071 39 1 10.3145 -1.0933 1.4656 40 1 15.9919 -1.4646 1.4774 41 1 13.6776 -0.4030 -0.1566 42 1 13.9188 0.7651 1.1705 43 1 13.4041 1.8306 -1.5913 44 1 6.8904 -1.2552 -0.0006 45 1 4.7812 -2.4817 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958174543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:18 Heat of formation + Delta-G solvation = -16.596822 kcal Electronic energy + Delta-G solvation = -28976.401908 eV Core-core repulsion = 24768.313820 eV Total energy + Delta-G solvation = -4208.088088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.67495 -40.16208 -38.43386 -37.68725 -35.33912 -35.19143 -34.71761 -32.50235 -31.97585 -31.21617 -29.88716 -28.51687 -27.54580 -25.70868 -24.51471 -23.27955 -22.70908 -21.99934 -21.11271 -20.32724 -20.02293 -18.51273 -17.94813 -17.28247 -17.05951 -16.94935 -16.44074 -15.95346 -15.45352 -15.09949 -14.77221 -14.55430 -14.27233 -14.16002 -13.96807 -13.79177 -13.61802 -13.45558 -13.31702 -13.10877 -12.68885 -12.63188 -12.46382 -12.05731 -11.96444 -11.67731 -11.50305 -11.25911 -10.99641 -10.88139 -10.83208 -10.65024 -10.22025 -10.09055 -9.85111 -9.82099 -9.27790 -9.24601 -8.97543 -8.90940 -8.68887 -6.93900 -5.78943 -3.13649 0.29853 0.40930 1.94941 2.02016 2.63036 2.95778 3.36064 3.40360 3.41733 3.42036 3.48188 4.05770 4.38431 4.41736 4.49094 4.58963 4.61245 4.70747 4.82490 4.87513 4.94648 5.01402 5.11112 5.15621 5.40304 5.42580 5.47257 5.61122 5.64278 5.75207 5.79543 5.82035 5.82992 5.98414 6.00492 6.09056 6.17761 6.29789 6.36990 6.50556 6.77902 7.17103 7.35953 7.43262 7.45764 7.71227 8.11365 8.15581 8.16971 9.12376 9.72976 10.37067 11.32524 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002067 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.035758 B =13541.986907 C =14874.401992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.246 3.754 3 N -0.474 5.474 4 C 0.013 3.987 5 C 0.004 3.996 6 C -0.131 4.131 7 C 0.560 3.440 8 O -0.536 6.536 9 N -0.716 5.716 10 C 0.133 3.867 11 C -0.108 4.108 12 H 0.090 0.910 13 C 0.141 3.859 14 N -0.602 5.602 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.152 3.848 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.567 6.567 27 C -0.062 4.062 28 C -0.094 4.094 29 C 0.027 3.973 30 O -0.212 6.212 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.401 0.599 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.042 0.958 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.376 0.624 44 H 0.147 0.853 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.686 1.596 -4.985 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 N -0.204 5.204 4 C -0.098 4.098 5 C -0.015 4.015 6 C -0.136 4.136 7 C 0.347 3.653 8 O -0.414 6.414 9 N -0.367 5.367 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.108 0.892 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.360 4.360 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.027 3.973 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.372 6.372 27 C -0.081 4.081 28 C -0.113 4.113 29 C -0.024 4.024 30 O -0.104 6.104 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.223 0.777 44 H 0.165 0.835 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.205 2.682 -5.030 25.841 hybrid contribution 1.262 -1.683 0.695 2.215 sum -23.943 0.999 -4.335 24.352 Atomic orbital electron populations 1.20434 0.80636 1.05325 1.05688 1.26542 0.96725 0.78115 0.95183 1.70643 1.00725 1.28892 1.20124 1.19720 0.92104 0.91192 1.06773 1.20399 0.87247 1.01167 0.92732 1.19809 0.93527 0.93533 1.06682 1.17948 0.83407 0.87106 0.76858 1.90796 1.87512 1.13226 1.49881 1.45935 1.05737 1.10610 1.74462 1.21438 0.80633 0.94422 1.02559 1.22617 0.92502 0.97453 1.00234 0.89168 1.21634 0.88377 0.96257 0.92279 1.44294 1.00958 1.37484 1.50190 1.19011 0.91775 1.07307 1.17867 0.90306 1.24826 0.96043 0.99642 0.99883 1.69931 1.03312 1.41737 1.41954 0.86166 0.77894 0.81598 0.79884 1.21110 1.21563 1.21114 1.21820 0.91207 0.91047 0.93260 1.23120 0.94754 0.97705 0.82146 0.92493 1.86417 1.42896 1.82360 1.25497 1.20930 0.97955 0.92857 0.96350 1.19538 0.86917 1.00782 1.04053 1.20524 0.83915 0.94488 1.03467 1.84491 1.15295 1.36365 1.74231 0.88843 0.87828 0.87835 0.83107 0.76315 0.90885 0.91051 0.95832 0.93933 0.93603 0.92406 0.93633 0.77673 0.83504 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.25 2.19 8.23 -13.11 -0.11 2.08 16 3 N -0.47 -5.58 11.34 -8.72 -0.10 -5.67 16 4 C 0.01 0.16 7.23 -84.72 -0.61 -0.45 16 5 C 0.00 0.05 9.64 -38.84 -0.37 -0.32 16 6 C -0.13 -1.51 5.87 -104.99 -0.62 -2.13 16 7 C 0.56 7.68 7.77 -12.39 -0.10 7.58 16 8 O -0.54 -9.18 16.33 5.30 0.09 -9.09 16 9 N -0.72 -8.96 5.45 -61.29 -0.33 -9.29 16 10 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 11 C -0.11 -1.79 2.77 -88.48 -0.25 -2.03 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 13 C 0.14 2.69 6.65 -2.53 -0.02 2.67 16 14 N -0.60 -14.73 3.39 -170.07 -0.58 -15.30 16 15 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -26.40 10.31 55.49 0.57 -25.82 16 19 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.15 3.53 5.15 -3.06 -0.02 3.52 16 24 C 0.08 1.50 3.80 -24.90 -0.09 1.40 16 25 H 0.06 0.96 8.04 -51.93 -0.42 0.55 16 26 O -0.57 -9.59 13.39 -35.23 -0.47 -10.07 16 27 C -0.06 -0.56 9.47 -39.52 -0.37 -0.93 16 28 C -0.09 -0.83 9.99 -39.96 -0.40 -1.23 16 29 C 0.03 0.29 7.43 -38.48 -0.29 0.01 16 30 O -0.21 -2.13 10.77 3.82 0.04 -2.09 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.24 8.14 -51.92 -0.42 -0.18 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.15 1.88 7.64 -52.49 -0.40 1.48 16 35 H 0.40 4.09 6.48 -40.82 -0.26 3.83 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 38 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.52 7.30 -51.93 -0.38 1.14 16 42 H 0.05 1.16 7.50 -51.93 -0.39 0.78 16 43 H 0.38 4.94 9.12 45.56 0.42 5.35 16 44 H 0.15 0.96 6.37 -52.48 -0.33 0.62 16 45 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -35.40 378.61 -8.33 -43.73 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.10 Total: 5.80 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -3.13 Total: 5.52 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.44 Total: -56.09 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.34 Total: -21.25 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.40 -8.33 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958174543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds