Wall clock time and date at job start Wed Apr 1 2020 03:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29877 * 124.82931 * 2 1 4 4 C 1.36123 * 108.76368 * 179.97438 * 3 2 1 5 5 C 1.39272 * 133.76503 * 180.02562 * 4 3 2 6 6 C 1.39189 * 119.46697 * 180.02562 * 5 4 3 7 7 C 1.47719 * 119.95288 * 180.27882 * 6 5 4 8 8 O 1.21574 * 119.99739 * 359.72175 * 7 6 5 9 9 N 1.34769 * 120.00246 * 179.72684 * 7 6 5 10 10 C 1.46506 * 120.00188 * 180.02562 * 9 7 6 11 11 C 1.52988 * 109.47393 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88791 * 51.11502 * 11 10 9 13 13 C 1.54912 * 111.00348 * 287.19306 * 11 10 9 14 14 N 1.47424 * 104.83518 * 204.91510 * 13 11 10 15 15 C 1.36936 * 125.65241 * 204.14848 * 14 13 11 16 16 H 1.07998 * 119.99806 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00205 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99661 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99937 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47125 * 60.00236 * 19 17 15 21 21 H 1.48505 * 109.46969 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47120 * 300.00260 * 19 17 15 23 23 C 1.47026 * 108.70071 * 24.13115 * 14 13 11 24 24 C 1.54324 * 107.26933 * 358.93570 * 23 14 13 25 25 H 1.09006 * 110.86765 * 96.24539 * 24 23 14 26 26 O 1.42902 * 110.71886 * 219.44290 * 24 23 14 27 27 C 1.40055 * 120.09662 * 0.02562 * 6 5 4 28 28 C 1.36518 * 120.47629 * 359.97438 * 27 6 5 29 29 C 1.38900 * 120.18924 * 359.97438 * 28 27 6 30 30 O 1.34240 * 124.83899 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47303 * 299.99360 * 1 2 3 33 33 H 1.08996 * 109.47725 * 60.00069 * 1 2 3 34 34 H 1.07998 * 120.26396 * 359.97438 * 5 4 3 35 35 H 0.97001 * 120.00385 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.46807 * 299.99980 * 10 9 7 37 37 H 1.08997 * 109.46911 * 59.99134 * 10 9 7 38 38 H 1.08999 * 110.36656 * 323.75516 * 13 11 10 39 39 H 1.09000 * 110.36805 * 86.07987 * 13 11 10 40 40 H 0.96995 * 119.99401 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.87900 * 239.52129 * 23 14 13 42 42 H 1.08999 * 110.01605 * 118.42952 * 23 14 13 43 43 H 0.96694 * 114.00206 * 293.52596 * 26 24 23 44 44 H 1.08004 * 119.75930 * 179.97438 * 27 6 5 45 45 H 1.08003 * 119.90604 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2487 1.0661 0.0000 4 6 3.5568 0.6894 0.0006 5 6 4.7608 1.3893 0.0013 6 6 5.9618 0.6857 0.0012 7 6 7.2451 1.4172 0.0082 8 8 7.2518 2.6330 0.0089 9 7 8.4085 0.7370 0.0137 10 6 9.6813 1.4625 0.0212 11 6 10.8387 0.4620 0.0270 12 1 10.7190 -0.2753 -0.7669 13 6 10.9715 -0.2254 1.4089 14 7 12.3828 -0.6443 1.4880 15 6 12.8713 -1.6607 2.2648 16 1 12.2014 -2.2321 2.8902 17 6 14.2276 -1.9560 2.2492 18 7 15.0441 -1.2586 1.4880 19 14 14.8940 -3.3420 3.3094 20 1 14.2443 -4.6194 2.9200 21 1 16.3617 -3.4538 3.1129 22 1 14.6056 -3.0553 4.7376 23 6 13.1788 0.2097 0.5943 24 6 12.2037 1.1898 -0.0913 25 1 12.1787 2.1443 0.4348 26 8 12.5585 1.3796 -1.4625 27 6 5.9553 -0.7148 -0.0001 28 6 4.7755 -1.4017 -0.0008 29 6 3.5678 -0.7156 0.0003 30 8 2.2738 -1.1018 0.0005 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 4.7626 2.4693 0.0011 35 1 8.4033 -0.2330 0.0134 36 1 9.7472 2.0897 -0.8679 37 1 9.7377 2.0880 0.9120 38 1 10.7398 0.4797 2.2071 39 1 10.3145 -1.0933 1.4656 40 1 15.9919 -1.4646 1.4774 41 1 13.6776 -0.4030 -0.1566 42 1 13.9188 0.7651 1.1705 43 1 13.4041 1.8306 -1.5913 44 1 6.8904 -1.2552 -0.0006 45 1 4.7812 -2.4817 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958174543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:17 Heat of formation + Delta-G solvation = -45.614358 kcal Electronic energy + Delta-G solvation = -28977.660203 eV Core-core repulsion = 24768.313820 eV Total energy + Delta-G solvation = -4209.346383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.41417 -41.22789 -39.86901 -38.63814 -36.63505 -36.22352 -35.99216 -34.07745 -32.79307 -32.03862 -31.36411 -29.54359 -28.95760 -27.23601 -25.77523 -24.54248 -23.47119 -22.72349 -22.37696 -21.85191 -21.38128 -19.54437 -18.82882 -18.70848 -18.28129 -18.01836 -17.54549 -17.01539 -16.92593 -16.44215 -15.99252 -15.72108 -15.51214 -15.26107 -14.88911 -14.76262 -14.64961 -14.37600 -14.19428 -14.10761 -13.97246 -13.74927 -13.43884 -13.43093 -13.18369 -13.08517 -12.72304 -12.67372 -12.42615 -12.36725 -12.32239 -11.90809 -11.78461 -11.65874 -11.51458 -11.16754 -10.80205 -10.70548 -10.27939 -9.92964 -9.66221 -8.91675 -7.84687 -5.20913 -0.47705 -0.40650 1.23649 1.35450 1.47864 1.50587 1.56684 1.67178 1.94049 2.49511 2.59298 2.76594 3.24842 3.28666 3.35923 3.52215 3.59474 3.74073 3.82313 3.88130 3.90814 3.98189 4.16350 4.17739 4.42104 4.47207 4.56674 4.60426 4.62579 4.65356 4.78199 4.80157 4.89477 4.90687 4.96988 5.00679 5.04966 5.20335 5.24026 5.34194 5.39747 5.44348 5.50600 5.73273 6.18103 6.42222 6.44950 6.89829 7.07856 7.08675 7.75978 8.39210 9.25182 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002067 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.035758 B =13541.986907 C =14874.401992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.256 3.744 3 N -0.515 5.515 4 C -0.008 4.008 5 C -0.015 4.015 6 C -0.135 4.135 7 C 0.563 3.437 8 O -0.576 6.576 9 N -0.705 5.705 10 C 0.146 3.854 11 C -0.089 4.089 12 H 0.091 0.909 13 C 0.138 3.862 14 N -0.624 5.624 15 C -0.241 4.241 16 H 0.089 0.911 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.278 1.278 23 C 0.161 3.839 24 C 0.096 3.904 25 H 0.074 0.926 26 O -0.570 6.570 27 C -0.056 4.056 28 C -0.083 4.083 29 C 0.015 3.985 30 O -0.214 6.214 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.415 0.585 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.246 0.754 41 H 0.020 0.980 42 H 0.011 0.989 43 H 0.393 0.607 44 H 0.177 0.823 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.928 -0.177 -4.891 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.045 3.955 3 N -0.245 5.245 4 C -0.118 4.118 5 C -0.035 4.035 6 C -0.139 4.139 7 C 0.351 3.649 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.022 3.978 11 C -0.109 4.109 12 H 0.110 0.890 13 C 0.013 3.987 14 N -0.352 5.352 15 C -0.370 4.370 16 H 0.106 0.894 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.204 1.204 23 C 0.035 3.965 24 C 0.035 3.965 25 H 0.092 0.908 26 O -0.377 6.377 27 C -0.075 4.075 28 C -0.102 4.102 29 C -0.036 4.036 30 O -0.106 6.106 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.242 0.758 44 H 0.194 0.806 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -27.479 0.895 -4.940 27.934 hybrid contribution 1.854 -1.122 0.657 2.265 sum -25.624 -0.228 -4.284 25.981 Atomic orbital electron populations 1.20794 0.76931 1.07325 1.06977 1.27650 0.98328 0.77211 0.92297 1.70646 1.00953 1.30409 1.22503 1.19886 0.92322 0.92211 1.07428 1.20329 0.88075 1.00646 0.94405 1.19664 0.91966 0.94636 1.07668 1.18217 0.84152 0.86664 0.75884 1.90777 1.88062 1.15065 1.51791 1.45761 1.04783 1.11242 1.73880 1.21174 0.80540 0.93697 1.02424 1.22414 0.92373 0.97403 0.98666 0.89033 1.21830 0.85894 0.97251 0.93754 1.44597 1.03418 1.37192 1.49950 1.19454 0.92144 1.07635 1.17717 0.89369 1.25674 0.96609 1.02267 1.01588 1.70158 1.02958 1.43333 1.43635 0.85147 0.76558 0.79123 0.78465 1.20069 1.22424 1.20363 1.21580 0.91862 0.91015 0.92028 1.22895 0.94048 0.97116 0.82418 0.90806 1.86385 1.44190 1.82644 1.24453 1.21203 0.99388 0.91556 0.95307 1.19933 0.85835 1.02303 1.02089 1.20872 0.84891 0.94103 1.03701 1.84514 1.15047 1.36757 1.74316 0.86480 0.86397 0.86341 0.84711 0.74691 0.91025 0.91319 0.95276 0.91993 0.94468 0.96190 0.97074 0.75772 0.80572 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 71.23 0.75 0.47 16 2 C 0.26 4.22 8.23 88.40 0.73 4.95 16 3 N -0.51 -12.10 11.34 -296.34 -3.36 -15.46 16 4 C -0.01 -0.20 7.23 39.28 0.28 0.09 16 5 C -0.01 -0.37 9.64 22.75 0.22 -0.15 16 6 C -0.13 -3.00 5.87 -20.10 -0.12 -3.12 16 7 C 0.56 14.92 7.77 86.75 0.67 15.60 16 8 O -0.58 -19.85 16.33 -3.95 -0.06 -19.91 16 9 N -0.70 -16.10 5.45 -466.10 -2.54 -18.64 16 10 C 0.15 3.92 5.13 86.37 0.44 4.36 16 11 C -0.09 -2.77 2.77 -9.41 -0.03 -2.79 16 12 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.14 5.00 6.65 86.86 0.58 5.57 16 14 N -0.62 -30.40 3.39 -691.97 -2.35 -32.75 16 15 C -0.24 -12.91 10.28 84.03 0.86 -12.05 16 16 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 18 N -0.95 -56.05 10.31 21.65 0.22 -55.83 16 19 Si 0.98 44.56 29.55 68.60 2.03 46.59 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 C 0.16 7.63 5.15 86.73 0.45 8.07 16 24 C 0.10 3.37 3.80 31.78 0.12 3.49 16 25 H 0.07 2.39 8.04 -2.38 -0.02 2.37 16 26 O -0.57 -18.60 13.39 -148.98 -1.99 -20.59 16 27 C -0.06 -0.86 9.47 22.31 0.21 -0.65 16 28 C -0.08 -1.24 9.99 22.03 0.22 -1.01 16 29 C 0.02 0.31 7.43 22.98 0.17 0.49 16 30 O -0.21 -3.93 10.77 -9.25 -0.10 -4.03 16 31 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.14 3.68 7.64 -2.91 -0.02 3.66 16 35 H 0.41 7.13 6.48 -92.71 -0.60 6.53 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 1.94 7.96 -2.39 -0.02 1.92 16 38 H 0.03 1.06 7.91 -2.39 -0.02 1.04 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.02 1.08 7.30 -2.39 -0.02 1.07 16 42 H 0.01 0.59 7.50 -2.39 -0.02 0.57 16 43 H 0.39 9.94 9.12 -74.06 -0.68 9.27 16 44 H 0.18 1.57 6.37 -2.91 -0.02 1.55 16 45 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -79.60 378.61 -2.35 -81.96 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.22 Total: 18.68 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.03 Total: 19.99 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -8.03 Total: -122.68 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -2.16 Total: -44.53 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -79.60 -2.35 -81.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958174543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.341 kcal (2) G-P(sol) polarization free energy of solvation -79.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds