Wall clock time and date at job start Wed Apr 1 2020 03:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30092 * 124.88808 * 2 1 4 4 C 1.35581 * 108.84270 * 179.76207 * 3 2 1 5 5 C 1.40285 * 106.62055 * 0.40419 * 4 3 2 6 6 C 1.38589 * 119.92197 * 179.79041 * 5 4 3 7 7 C 1.38218 * 120.21494 * 359.72599 * 6 5 4 8 8 C 1.38184 * 120.67420 * 0.02562 * 7 6 5 9 9 C 1.39360 * 120.23866 * 359.97438 * 8 7 6 10 10 C 1.47438 * 120.29351 * 180.02562 * 9 8 7 11 11 O 1.21605 * 119.99699 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00313 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47260 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.63876 * 303.31300 * 14 13 12 16 16 C 1.54319 * 110.72026 * 66.45976 * 14 13 12 17 17 N 1.47019 * 107.27411 * 140.73488 * 16 14 13 18 18 C 1.36933 * 125.65365 * 181.02085 * 17 16 14 19 19 H 1.08005 * 119.99346 * 13.62994 * 18 17 16 20 20 C 1.38803 * 120.00505 * 193.62301 * 18 17 16 21 21 N 1.31626 * 119.99731 * 27.27804 * 20 18 17 22 22 Si 1.86804 * 120.00452 * 207.27269 * 20 18 17 23 23 H 1.48494 * 109.46849 * 90.00056 * 22 20 18 24 24 H 1.48503 * 109.46862 * 330.00133 * 22 20 18 25 25 H 1.48496 * 109.47029 * 210.00372 * 22 20 18 26 26 C 1.47429 * 108.70035 * 1.28221 * 17 16 14 27 27 C 1.55122 * 104.72375 * 335.55720 * 26 17 16 28 28 H 1.09003 * 110.91017 * 155.27351 * 27 26 17 29 29 O 1.42903 * 111.22668 * 279.17415 * 27 26 17 30 30 O 1.34143 * 124.87968 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46458 * 300.00555 * 1 2 3 33 33 H 1.09006 * 109.46799 * 59.99916 * 1 2 3 34 34 H 1.08007 * 119.89235 * 179.70451 * 6 5 4 35 35 H 1.07997 * 119.65956 * 180.02562 * 7 6 5 36 36 H 1.07994 * 119.87723 * 180.02562 * 8 7 6 37 37 H 0.97003 * 119.99585 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.46590 * 60.00215 * 13 12 10 39 39 H 1.08997 * 109.47229 * 300.00877 * 13 12 10 40 40 H 1.09000 * 109.88113 * 21.31392 * 16 14 13 41 41 H 1.09006 * 110.00857 * 260.22355 * 16 14 13 42 42 H 0.96994 * 119.99479 * 5.84381 * 21 20 18 43 43 H 1.09001 * 110.36546 * 94.48417 * 26 17 16 44 44 H 1.08995 * 110.36676 * 216.80510 * 26 17 16 45 45 H 0.96702 * 114.00038 * 292.20559 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2511 1.0671 0.0000 4 6 3.5540 0.6924 0.0053 5 6 3.5682 -0.7104 -0.0008 6 6 4.7762 -1.3896 -0.0017 7 6 5.9679 -0.6893 -0.0023 8 6 5.9735 0.6925 -0.0015 9 6 4.7725 1.3992 -0.0006 10 6 4.7771 2.8736 -0.0003 11 8 3.7258 3.4849 0.0010 12 7 5.9463 3.5439 -0.0015 13 6 5.9509 5.0088 -0.0017 14 6 7.3950 5.5143 -0.0037 15 1 7.9438 5.1127 0.8481 16 6 8.0990 5.1504 -1.3279 17 7 8.9378 6.2971 -1.7059 18 6 9.7122 6.3828 -2.8319 19 1 9.5783 5.6726 -3.6346 20 6 10.6690 7.3824 -2.9420 21 7 11.2185 7.8894 -1.8588 22 14 11.1768 8.0079 -4.6274 23 1 10.3040 9.1442 -5.0172 24 1 11.0403 6.9144 -5.6229 25 1 12.5899 8.4620 -4.5816 26 6 8.8121 7.3371 -0.6685 27 6 7.4377 7.0653 -0.0024 28 1 7.4145 7.4559 1.0150 29 8 6.3692 7.6079 -0.7808 30 8 2.2741 -1.1005 -0.0005 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 4.7865 -2.4696 -0.0016 35 1 6.9041 -1.2277 -0.0034 36 1 6.9122 1.2266 -0.0024 37 1 6.7849 3.0562 -0.0029 38 1 5.4390 5.3739 0.8887 39 1 5.4373 5.3736 -0.8912 40 1 7.3562 4.9628 -2.1032 41 1 8.7209 4.2660 -1.1888 42 1 11.0188 7.5079 -0.9897 43 1 9.6155 7.2432 0.0622 44 1 8.8242 8.3283 -1.1216 45 1 6.3548 8.5744 -0.8094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958735797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:30 Heat of formation + Delta-G solvation = -11.847776 kcal Electronic energy + Delta-G solvation = -29596.461568 eV Core-core repulsion = 25388.579414 eV Total energy + Delta-G solvation = -4207.882154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.58327 -39.93340 -38.58184 -37.73957 -35.23483 -34.95385 -34.68340 -32.48899 -31.95322 -31.33206 -29.42753 -28.47377 -27.95939 -25.46838 -24.20227 -23.65383 -22.70135 -22.11067 -20.79627 -20.16031 -19.77833 -18.40554 -17.93253 -17.70651 -17.18263 -16.88591 -16.72885 -15.60342 -15.54532 -15.16501 -14.59172 -14.38470 -14.24341 -14.07904 -13.91894 -13.74584 -13.65650 -13.41096 -13.22817 -13.15621 -12.69463 -12.49775 -12.34556 -12.27674 -12.14881 -11.57013 -11.54165 -11.00115 -10.77721 -10.75951 -10.66080 -10.52096 -10.35652 -10.04306 -9.75955 -9.66942 -9.30418 -9.22834 -8.94581 -8.71939 -8.43828 -6.96132 -6.11356 -3.13481 0.04155 0.74718 2.11257 2.12656 2.69878 3.11696 3.46206 3.51331 3.53698 3.58106 3.69820 4.16824 4.39749 4.49907 4.54051 4.60933 4.62646 4.70151 4.90510 4.96365 5.00751 5.03800 5.16886 5.21653 5.23703 5.29868 5.42881 5.53197 5.57103 5.71397 5.78090 5.81161 5.86591 5.91068 5.93759 6.16770 6.23198 6.26631 6.45966 6.55258 6.71979 6.83256 6.88803 7.35499 7.54914 7.74186 8.09326 8.28744 8.46020 8.99888 9.79552 10.33311 11.21903 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002258 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.056184 B =12395.116798 C =13053.823395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.245 3.755 3 N -0.453 5.453 4 C 0.075 3.925 5 C -0.004 4.004 6 C -0.068 4.068 7 C -0.101 4.101 8 C -0.083 4.083 9 C -0.076 4.076 10 C 0.550 3.450 11 O -0.510 6.510 12 N -0.723 5.723 13 C 0.142 3.858 14 C -0.107 4.107 15 H 0.088 0.912 16 C 0.145 3.855 17 N -0.598 5.598 18 C -0.330 4.330 19 H 0.066 0.934 20 C -0.028 4.028 21 N -0.923 5.923 22 Si 1.067 2.933 23 H -0.293 1.293 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.118 3.882 27 C 0.092 3.908 28 H 0.060 0.940 29 O -0.553 6.553 30 O -0.215 6.215 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.398 0.602 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.031 0.969 41 H 0.020 0.980 42 H 0.267 0.733 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.754 -18.434 8.092 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 N -0.182 5.182 4 C -0.039 4.039 5 C -0.055 4.055 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.080 4.080 10 C 0.336 3.664 11 O -0.385 6.385 12 N -0.376 5.376 13 C 0.019 3.981 14 C -0.126 4.126 15 H 0.106 0.894 16 C 0.020 3.980 17 N -0.324 5.324 18 C -0.458 4.458 19 H 0.084 0.916 20 C -0.228 4.228 21 N -0.565 5.565 22 Si 0.897 3.103 23 H -0.221 1.221 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.008 4.008 27 C 0.032 3.968 28 H 0.078 0.922 29 O -0.358 6.358 30 O -0.107 6.107 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.888 -16.869 7.098 24.235 hybrid contribution 0.061 -1.572 0.854 1.790 sum -15.827 -18.441 7.952 25.569 Atomic orbital electron populations 1.20430 0.80625 1.05072 1.05863 1.26813 0.96929 0.78104 0.94723 1.70788 1.00618 1.27928 1.18885 1.19522 0.91605 0.90526 1.02227 1.20235 0.84189 0.94184 1.06843 1.20048 0.87259 1.00552 1.00843 1.20965 0.97451 0.93712 0.99830 1.21367 0.96924 0.94584 0.97414 1.19317 0.90580 0.93647 1.04478 1.17914 0.84259 0.86410 0.77833 1.90857 1.30902 1.69012 1.47723 1.46001 1.08026 1.08219 1.75361 1.21204 0.96343 0.77446 1.03070 1.22513 0.95151 0.95024 0.99918 0.89413 1.21323 0.93051 0.91173 0.92491 1.44398 1.52080 1.12087 1.23882 1.19804 1.15157 1.17761 0.93077 0.91578 1.25704 0.94209 0.98004 1.04921 1.70782 1.40232 1.46063 0.99418 0.83477 0.76068 0.76072 0.74664 1.22091 1.21920 1.21667 1.22272 0.92313 0.94523 0.91704 1.23013 0.88425 0.92397 0.93002 0.92180 1.86446 1.49999 1.25206 1.74193 1.84496 1.15057 1.36444 1.74678 0.88971 0.87789 0.87741 0.84231 0.83333 0.83901 0.76739 0.91605 0.89969 0.95095 0.96188 0.92090 0.94986 0.92397 0.77779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.25 2.71 8.24 -13.02 -0.11 2.60 16 3 N -0.45 -6.85 10.62 -8.48 -0.09 -6.94 16 4 C 0.08 1.09 6.84 -84.45 -0.58 0.51 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.34 16 6 C -0.07 -0.58 10.05 -39.46 -0.40 -0.97 16 7 C -0.10 -0.77 10.00 -39.61 -0.40 -1.16 16 8 C -0.08 -0.80 9.53 -39.18 -0.37 -1.17 16 9 C -0.08 -1.04 5.90 -104.74 -0.62 -1.66 16 10 C 0.55 8.88 7.76 -12.52 -0.10 8.78 16 11 O -0.51 -10.25 16.07 5.27 0.08 -10.16 16 12 N -0.72 -10.24 5.35 -61.38 -0.33 -10.57 16 13 C 0.14 2.28 4.60 -4.04 -0.02 2.26 16 14 C -0.11 -1.77 2.93 -88.79 -0.26 -2.03 16 15 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.15 2.99 6.52 -3.07 -0.02 2.97 16 17 N -0.60 -15.07 3.33 -169.94 -0.57 -15.63 16 18 C -0.33 -9.38 10.05 -15.06 -0.15 -9.53 16 19 H 0.07 1.89 7.96 -52.48 -0.42 1.47 16 20 C -0.03 -0.79 5.09 -17.43 -0.09 -0.88 16 21 N -0.92 -27.59 12.82 55.49 0.71 -26.88 16 22 Si 1.07 25.61 30.00 -169.99 -5.10 20.52 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.12 2.65 4.97 -2.41 -0.01 2.64 16 27 C 0.09 1.62 4.17 -24.47 -0.10 1.52 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 O -0.55 -9.82 12.25 -35.23 -0.43 -10.25 16 30 O -0.21 -2.41 10.77 3.72 0.04 -2.37 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.14 1.04 6.39 -52.49 -0.34 0.70 16 37 H 0.40 4.57 6.36 -40.82 -0.26 4.31 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.55 7.45 -51.93 -0.39 1.16 16 40 H 0.03 0.68 7.77 -51.93 -0.40 0.28 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.27 7.92 5.83 -40.82 -0.24 7.68 16 43 H 0.03 0.75 6.84 -51.93 -0.36 0.40 16 44 H 0.06 1.43 7.73 -51.93 -0.40 1.03 16 45 H 0.38 5.24 9.12 45.56 0.42 5.65 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -39.14 375.67 -8.13 -47.27 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.98 Total: 5.77 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -3.13 Total: 3.59 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.27 Total: -60.02 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.31 Total: -22.78 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.10 Total: 20.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.14 -8.13 -47.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958735797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.418 kcal (2) G-P(sol) polarization free energy of solvation -39.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds