Wall clock time and date at job start Wed Apr 1 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30092 * 124.88808 * 2 1 4 4 C 1.35581 * 108.84270 * 179.76207 * 3 2 1 5 5 C 1.40285 * 106.62055 * 0.40419 * 4 3 2 6 6 C 1.38589 * 119.92197 * 179.79041 * 5 4 3 7 7 C 1.38218 * 120.21494 * 359.72599 * 6 5 4 8 8 C 1.38184 * 120.67420 * 0.02562 * 7 6 5 9 9 C 1.39360 * 120.23866 * 359.97438 * 8 7 6 10 10 C 1.47438 * 120.29351 * 180.02562 * 9 8 7 11 11 O 1.21605 * 119.99699 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00313 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47260 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.63876 * 303.31300 * 14 13 12 16 16 C 1.54319 * 110.72026 * 66.45976 * 14 13 12 17 17 N 1.47019 * 107.27411 * 140.73488 * 16 14 13 18 18 C 1.36933 * 125.65365 * 181.02085 * 17 16 14 19 19 H 1.08005 * 119.99346 * 13.62994 * 18 17 16 20 20 C 1.38803 * 120.00505 * 193.62301 * 18 17 16 21 21 N 1.31626 * 119.99731 * 27.27804 * 20 18 17 22 22 Si 1.86804 * 120.00452 * 207.27269 * 20 18 17 23 23 H 1.48494 * 109.46849 * 90.00056 * 22 20 18 24 24 H 1.48503 * 109.46862 * 330.00133 * 22 20 18 25 25 H 1.48496 * 109.47029 * 210.00372 * 22 20 18 26 26 C 1.47429 * 108.70035 * 1.28221 * 17 16 14 27 27 C 1.55122 * 104.72375 * 335.55720 * 26 17 16 28 28 H 1.09003 * 110.91017 * 155.27351 * 27 26 17 29 29 O 1.42903 * 111.22668 * 279.17415 * 27 26 17 30 30 O 1.34143 * 124.87968 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46458 * 300.00555 * 1 2 3 33 33 H 1.09006 * 109.46799 * 59.99916 * 1 2 3 34 34 H 1.08007 * 119.89235 * 179.70451 * 6 5 4 35 35 H 1.07997 * 119.65956 * 180.02562 * 7 6 5 36 36 H 1.07994 * 119.87723 * 180.02562 * 8 7 6 37 37 H 0.97003 * 119.99585 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.46590 * 60.00215 * 13 12 10 39 39 H 1.08997 * 109.47229 * 300.00877 * 13 12 10 40 40 H 1.09000 * 109.88113 * 21.31392 * 16 14 13 41 41 H 1.09006 * 110.00857 * 260.22355 * 16 14 13 42 42 H 0.96994 * 119.99479 * 5.84381 * 21 20 18 43 43 H 1.09001 * 110.36546 * 94.48417 * 26 17 16 44 44 H 1.08995 * 110.36676 * 216.80510 * 26 17 16 45 45 H 0.96702 * 114.00038 * 292.20559 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2511 1.0671 0.0000 4 6 3.5540 0.6924 0.0053 5 6 3.5682 -0.7104 -0.0008 6 6 4.7762 -1.3896 -0.0017 7 6 5.9679 -0.6893 -0.0023 8 6 5.9735 0.6925 -0.0015 9 6 4.7725 1.3992 -0.0006 10 6 4.7771 2.8736 -0.0003 11 8 3.7258 3.4849 0.0010 12 7 5.9463 3.5439 -0.0015 13 6 5.9509 5.0088 -0.0017 14 6 7.3950 5.5143 -0.0037 15 1 7.9438 5.1127 0.8481 16 6 8.0990 5.1504 -1.3279 17 7 8.9378 6.2971 -1.7059 18 6 9.7122 6.3828 -2.8319 19 1 9.5783 5.6726 -3.6346 20 6 10.6690 7.3824 -2.9420 21 7 11.2185 7.8894 -1.8588 22 14 11.1768 8.0079 -4.6274 23 1 10.3040 9.1442 -5.0172 24 1 11.0403 6.9144 -5.6229 25 1 12.5899 8.4620 -4.5816 26 6 8.8121 7.3371 -0.6685 27 6 7.4377 7.0653 -0.0024 28 1 7.4145 7.4559 1.0150 29 8 6.3692 7.6079 -0.7808 30 8 2.2741 -1.1005 -0.0005 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 4.7865 -2.4696 -0.0016 35 1 6.9041 -1.2277 -0.0034 36 1 6.9122 1.2266 -0.0024 37 1 6.7849 3.0562 -0.0029 38 1 5.4390 5.3739 0.8887 39 1 5.4373 5.3736 -0.8912 40 1 7.3562 4.9628 -2.1032 41 1 8.7209 4.2660 -1.1888 42 1 11.0188 7.5079 -0.9897 43 1 9.6155 7.2432 0.0622 44 1 8.8242 8.3283 -1.1216 45 1 6.3548 8.5744 -0.8094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958735797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:28 Heat of formation + Delta-G solvation = -44.764358 kcal Electronic energy + Delta-G solvation = -29597.888938 eV Core-core repulsion = 25388.579414 eV Total energy + Delta-G solvation = -4209.309524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.39191 -41.12718 -40.04092 -38.66764 -36.57357 -36.34055 -35.87582 -34.15978 -32.64097 -32.41624 -30.99109 -29.64338 -29.13769 -27.11832 -25.68691 -24.64059 -23.76742 -22.89661 -22.33237 -21.57290 -21.14121 -19.72181 -19.23252 -18.91084 -18.27851 -18.01308 -17.74545 -16.71815 -16.51689 -16.45284 -16.19342 -15.94575 -15.63199 -15.26385 -15.15703 -15.01662 -14.73573 -14.61968 -14.16150 -14.08062 -13.90539 -13.67347 -13.40550 -13.20559 -13.10625 -12.99371 -12.74779 -12.56734 -12.39029 -12.33433 -12.20194 -11.91401 -11.83981 -11.66819 -11.63151 -10.97726 -10.88994 -10.55269 -10.25882 -9.95735 -9.55332 -9.01683 -8.33372 -5.31931 -0.77394 -0.02181 1.29489 1.39806 1.56404 1.63291 1.69913 1.81312 1.97665 2.61427 2.63940 2.77675 3.13904 3.19683 3.33867 3.42520 3.67804 3.73024 3.76520 3.77390 3.85159 3.98627 4.03869 4.22093 4.28469 4.38417 4.51552 4.56454 4.58606 4.62940 4.67343 4.72243 4.83259 4.87188 4.90456 5.01128 5.08062 5.09027 5.11053 5.20958 5.21890 5.32838 5.51272 5.62667 6.30685 6.42109 6.54722 6.82442 6.91609 7.12648 7.68837 8.26145 8.99784 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002258 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.056184 B =12395.116798 C =13053.823395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.251 3.749 3 N -0.513 5.513 4 C 0.040 3.960 5 C -0.024 4.024 6 C -0.053 4.053 7 C -0.092 4.092 8 C -0.068 4.068 9 C -0.117 4.117 10 C 0.549 3.451 11 O -0.562 6.562 12 N -0.711 5.711 13 C 0.157 3.843 14 C -0.090 4.090 15 H 0.120 0.880 16 C 0.143 3.857 17 N -0.622 5.622 18 C -0.343 4.343 19 H 0.056 0.944 20 C -0.076 4.076 21 N -0.947 5.947 22 Si 1.115 2.885 23 H -0.288 1.288 24 H -0.275 1.275 25 H -0.290 1.290 26 C 0.120 3.880 27 C 0.103 3.897 28 H 0.101 0.899 29 O -0.568 6.568 30 O -0.215 6.215 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.176 0.824 35 H 0.195 0.805 36 H 0.167 0.833 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.013 0.987 41 H 0.032 0.968 42 H 0.258 0.742 43 H 0.023 0.977 44 H 0.026 0.974 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.436 -20.950 8.704 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.040 3.960 3 N -0.243 5.243 4 C -0.073 4.073 5 C -0.074 4.074 6 C -0.072 4.072 7 C -0.109 4.109 8 C -0.088 4.088 9 C -0.121 4.121 10 C 0.337 3.663 11 O -0.442 6.442 12 N -0.364 5.364 13 C 0.033 3.967 14 C -0.109 4.109 15 H 0.138 0.862 16 C 0.018 3.982 17 N -0.349 5.349 18 C -0.471 4.471 19 H 0.074 0.926 20 C -0.272 4.272 21 N -0.591 5.591 22 Si 0.940 3.060 23 H -0.215 1.215 24 H -0.200 1.200 25 H -0.217 1.217 26 C -0.006 4.006 27 C 0.043 3.957 28 H 0.118 0.882 29 O -0.375 6.375 30 O -0.107 6.107 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.194 0.806 35 H 0.212 0.788 36 H 0.184 0.816 37 H 0.250 0.750 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.562 -19.415 7.722 26.052 hybrid contribution -0.062 -0.887 0.655 1.104 sum -15.624 -20.301 8.376 26.952 Atomic orbital electron populations 1.20743 0.77205 1.07281 1.06620 1.27780 0.98456 0.77399 0.92316 1.70745 1.01817 1.30140 1.21643 1.19910 0.91757 0.92219 1.03438 1.20696 0.85241 0.93458 1.07989 1.20645 0.86097 1.02394 0.98045 1.21511 0.98896 0.92784 0.97731 1.21741 0.96194 0.95815 0.95042 1.19289 0.92106 0.92089 1.08624 1.18399 0.83716 0.87721 0.76513 1.90812 1.32661 1.70310 1.50369 1.45828 1.08406 1.07469 1.74731 1.20893 0.95466 0.78524 1.01803 1.22462 0.95170 0.94514 0.98756 0.86231 1.21419 0.92351 0.90347 0.94038 1.44661 1.51919 1.14409 1.23885 1.20011 1.15308 1.17660 0.94137 0.92646 1.26982 0.94557 0.98325 1.07343 1.70879 1.41684 1.46938 0.99551 0.82837 0.75637 0.76153 0.71376 1.21466 1.20037 1.21676 1.22266 0.95079 0.92366 0.90888 1.22998 0.85452 0.93146 0.94113 0.88178 1.86434 1.49632 1.26866 1.74565 1.84494 1.15077 1.36411 1.74713 0.86001 0.86750 0.86956 0.80631 0.78816 0.81597 0.75029 0.90993 0.93216 0.96898 0.94993 0.93078 0.95918 0.95589 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.23 0.75 0.11 16 2 C 0.25 5.61 8.24 88.37 0.73 6.34 16 3 N -0.51 -16.32 10.62 -295.53 -3.14 -19.46 16 4 C 0.04 1.19 6.84 39.70 0.27 1.47 16 5 C -0.02 -0.54 7.42 22.85 0.17 -0.37 16 6 C -0.05 -0.73 10.05 22.35 0.22 -0.51 16 7 C -0.09 -1.01 10.00 22.25 0.22 -0.79 16 8 C -0.07 -1.15 9.53 22.53 0.21 -0.94 16 9 C -0.12 -3.20 5.90 -19.94 -0.12 -3.32 16 10 C 0.55 18.20 7.76 86.67 0.67 18.87 16 11 O -0.56 -23.91 16.07 -4.05 -0.07 -23.97 16 12 N -0.71 -19.77 5.35 -466.37 -2.50 -22.26 16 13 C 0.16 4.95 4.60 86.38 0.40 5.34 16 14 C -0.09 -2.84 2.93 -9.61 -0.03 -2.87 16 15 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 16 C 0.14 5.84 6.52 86.73 0.57 6.40 16 17 N -0.62 -31.62 3.33 -691.57 -2.30 -33.92 16 18 C -0.34 -19.72 10.05 84.03 0.84 -18.87 16 19 H 0.06 3.22 7.96 -2.91 -0.02 3.20 16 20 C -0.08 -4.40 5.09 84.86 0.43 -3.97 16 21 N -0.95 -57.44 12.82 21.65 0.28 -57.17 16 22 Si 1.11 51.99 30.00 68.60 2.06 54.05 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.12 5.42 4.97 86.93 0.43 5.85 16 27 C 0.10 3.50 4.17 32.06 0.13 3.64 16 28 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 29 O -0.57 -19.86 12.25 -148.98 -1.82 -21.68 16 30 O -0.21 -4.68 10.77 -9.60 -0.10 -4.79 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.19 0.43 8.06 -2.91 -0.02 0.40 16 36 H 0.17 1.86 6.39 -2.91 -0.02 1.84 16 37 H 0.41 8.75 6.36 -92.71 -0.59 8.16 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 40 H 0.01 0.57 7.77 -2.39 -0.02 0.56 16 41 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.26 15.64 5.83 -92.71 -0.54 15.10 16 43 H 0.02 1.08 6.84 -2.39 -0.02 1.07 16 44 H 0.03 1.31 7.73 -2.39 -0.02 1.30 16 45 H 0.39 10.71 9.12 -74.06 -0.68 10.03 16 Total: -1.00 -91.27 375.67 -1.66 -92.94 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.02 Total: 19.88 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.91 Total: 16.39 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -7.66 Total: -132.81 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -1.99 Total: -50.44 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.06 Total: 54.05 kcal Total: -91.27 -1.66 -92.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958735797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.172 kcal (2) G-P(sol) polarization free energy of solvation -91.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds