Wall clock time and date at job start Wed Apr 1 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.78145 * 2 1 4 4 C 1.54319 * 110.71862 * 236.76307 * 2 1 3 5 5 N 1.47022 * 107.26872 * 219.44192 * 4 2 1 6 6 C 1.36943 * 125.64401 * 178.98584 * 5 4 2 7 7 H 1.07995 * 120.00224 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99487 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00108 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46858 * 59.99937 * 10 8 6 12 12 H 1.48499 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47221 * 300.00007 * 10 8 6 14 14 C 1.47417 * 108.70536 * 358.94199 * 5 4 2 15 15 C 1.54906 * 104.83274 * 24.12833 * 14 5 4 16 16 H 1.09004 * 111.04108 * 204.90804 * 15 14 5 17 17 N 1.46492 * 111.00621 * 81.06473 * 15 14 5 18 18 C 1.34776 * 120.00108 * 92.80574 * 17 15 14 19 19 O 1.21572 * 120.00064 * 0.02562 * 18 17 15 20 20 C 1.47711 * 120.00262 * 179.97438 * 18 17 15 21 21 C 1.39995 * 119.96377 * 0.02562 * 20 18 17 22 22 C 1.36602 * 120.46227 * 180.02562 * 21 20 18 23 23 C 1.38804 * 120.21035 * 0.02562 * 22 21 20 24 24 O 1.35174 * 133.65404 * 179.97438 * 23 22 21 25 25 C 1.34397 * 108.24981 * 180.02562 * 24 23 22 26 26 O 1.35172 * 124.91281 * 180.02562 * 25 24 23 27 27 N 1.30591 * 110.17687 * 0.02562 * 25 24 23 28 28 C 1.36218 * 108.68047 * 359.97438 * 27 25 24 29 29 C 1.39223 * 133.66308 * 179.97438 * 28 27 25 30 30 H 1.09006 * 109.47085 * 296.76216 * 1 2 3 31 31 H 1.09004 * 109.47119 * 56.75733 * 1 2 3 32 32 H 1.08995 * 109.47103 * 176.75811 * 1 2 3 33 33 H 1.08994 * 109.47507 * 183.23882 * 3 2 1 34 34 H 1.09003 * 109.47058 * 303.24379 * 3 2 1 35 35 H 1.09007 * 109.46885 * 63.23652 * 3 2 1 36 36 H 1.09001 * 109.88524 * 338.86174 * 4 2 1 37 37 H 1.09003 * 109.88733 * 100.02765 * 4 2 1 38 38 H 0.97008 * 120.00222 * 180.02562 * 9 8 6 39 39 H 1.08996 * 110.36753 * 265.28897 * 14 5 4 40 40 H 1.08998 * 110.36808 * 142.96660 * 14 5 4 41 41 H 0.97000 * 120.00459 * 272.80403 * 17 15 14 42 42 H 1.08003 * 119.76699 * 359.74393 * 21 20 18 43 43 H 1.08001 * 119.89758 * 179.97438 * 22 21 20 44 44 H 0.96706 * 113.99515 * 359.97438 * 26 25 24 45 45 H 1.07997 * 120.26423 * 0.04769 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2444 -1.5506 -0.7390 6 6 4.0043 -2.3967 -1.5020 7 1 3.7612 -2.5505 -2.5429 8 6 5.0865 -3.0575 -0.9370 9 7 5.3819 -2.8712 0.3320 10 14 6.1227 -4.2122 -1.9773 11 1 6.7147 -3.4592 -3.1121 12 1 7.2088 -4.7886 -1.1447 13 1 5.2679 -5.3073 -2.5022 14 6 3.4632 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2138 16 1 2.1843 -0.1519 2.0872 17 7 1.2272 -1.9488 1.5144 18 6 1.2025 -2.4618 2.7605 19 8 1.8869 -1.9672 3.6351 20 6 0.3432 -3.6243 3.0638 21 6 -0.4450 -4.1930 2.0562 22 6 -1.2437 -5.2679 2.3255 23 6 -1.2816 -5.8070 3.6041 24 8 -1.9536 -6.8385 4.1623 25 6 -1.6060 -6.9152 5.4582 26 8 -2.0803 -7.8294 6.3336 27 7 -0.7437 -5.9787 5.7495 28 6 -0.4976 -5.2477 4.6267 29 6 0.3162 -4.1519 4.3523 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5634 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6750 1.9701 -0.8595 35 1 1.7691 1.9344 0.9176 36 1 1.3129 -1.4758 -1.5776 37 1 2.3740 -0.1024 -1.9978 38 1 6.1384 -3.3327 0.7268 39 1 4.1931 -0.4479 0.7984 40 1 3.7960 -2.1426 1.2168 41 1 0.6808 -2.3432 0.8167 42 1 -0.4248 -3.7761 1.0601 43 1 -1.8484 -5.6992 1.5414 44 1 -2.7137 -8.4507 5.9488 45 1 0.9224 -3.7153 5.1322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974713045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:28 Heat of formation + Delta-G solvation = 0.839498 kcal Electronic energy + Delta-G solvation = -30418.853200 eV Core-core repulsion = 26211.521208 eV Total energy + Delta-G solvation = -4207.331993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -43.56469 -40.04537 -38.83807 -38.18665 -37.08798 -34.99175 -33.85407 -33.10493 -31.01490 -30.70750 -29.77492 -28.04798 -26.83588 -25.62491 -24.63373 -23.64611 -23.16820 -22.10885 -21.10600 -20.23570 -19.61447 -18.90719 -17.93771 -17.58845 -17.52186 -16.73051 -16.11385 -15.73271 -15.39906 -14.76745 -14.67743 -14.27978 -14.23734 -14.06677 -13.97219 -13.75519 -13.64105 -13.21915 -13.13049 -12.78319 -12.53696 -12.16646 -11.92076 -11.81253 -11.70286 -11.35222 -11.27815 -11.17808 -10.99619 -10.76949 -10.67965 -10.43738 -10.23219 -9.98468 -9.83170 -9.69234 -9.59501 -9.00393 -8.68831 -8.56262 -8.37116 -6.81932 -5.63102 -3.06465 0.54861 0.64186 1.59885 2.14752 2.68641 2.94900 3.39838 3.44401 3.46783 3.48467 3.82822 4.21198 4.48505 4.52856 4.71479 4.80335 4.83640 4.98126 5.13162 5.23128 5.28154 5.35529 5.52064 5.61935 5.78114 5.80287 5.82729 5.87645 5.95774 6.02045 6.05382 6.09871 6.16849 6.23653 6.26778 6.39777 6.42374 6.48368 6.59594 6.68641 6.71778 6.96395 7.40064 7.48063 7.61608 7.85612 7.96727 8.38638 8.60474 9.21772 9.83411 10.47226 11.39321 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.003173 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.242286 B = 8821.102504 C =10227.378601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.145 3.855 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.693 5.693 18 C 0.559 3.441 19 O -0.535 6.535 20 C -0.114 4.114 21 C -0.065 4.065 22 C -0.088 4.088 23 C 0.022 3.978 24 O -0.244 6.244 25 C 0.432 3.568 26 O -0.391 6.391 27 N -0.467 5.467 28 C 0.037 3.963 29 C -0.003 4.003 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.022 0.978 40 H 0.114 0.886 41 H 0.396 0.604 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.424 0.576 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 -3.641 4.595 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.020 3.980 15 C 0.018 3.982 16 H 0.109 0.891 17 N -0.342 5.342 18 C 0.345 3.655 19 O -0.413 6.413 20 C -0.119 4.119 21 C -0.084 4.084 22 C -0.107 4.107 23 C -0.028 4.028 24 O -0.141 6.141 25 C 0.182 3.818 26 O -0.191 6.191 27 N -0.213 5.213 28 C -0.073 4.073 29 C -0.023 4.023 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.131 0.869 41 H 0.232 0.768 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.282 0.718 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.495 -3.135 6.250 18.841 hybrid contribution -0.440 -1.592 -1.830 2.465 sum -17.936 -4.727 4.420 19.068 Atomic orbital electron populations 1.21717 0.94606 1.01141 1.01358 1.21855 0.94846 0.95794 0.96396 1.21687 1.01944 0.94065 1.00907 1.21418 0.90302 0.92964 0.93678 1.44458 1.30668 1.50254 1.07323 1.18965 1.06557 1.17169 0.92828 0.90644 1.24782 0.98728 1.00523 0.96316 1.69781 1.29943 1.45931 1.10744 0.86204 0.79905 0.80650 0.79001 1.21276 1.21608 1.21266 1.22326 0.89150 1.01454 0.85104 1.22583 0.93192 0.85946 0.96499 0.89122 1.45670 1.45570 1.32892 1.10114 1.17835 0.81811 0.82794 0.83023 1.90783 1.42970 1.61054 1.46495 1.19917 0.99846 0.98423 0.93665 1.20900 0.93853 0.94315 0.99339 1.19464 1.02124 0.97207 0.91924 1.20066 0.96799 0.89486 0.96464 1.84445 1.59259 1.46449 1.23921 1.23030 0.90827 0.90797 0.77147 1.85188 1.61885 1.42187 1.29826 1.70917 1.16944 1.06892 1.26592 1.19454 1.00903 0.98897 0.88059 1.20363 0.94437 0.90978 0.96523 0.92747 0.92718 0.93036 0.91724 0.92714 0.93020 0.96104 0.95844 0.93592 0.96045 0.86891 0.76815 0.83673 0.84060 0.71843 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.07 37.16 0.30 -1.31 16 2 C -0.09 -1.38 0.80 -152.68 -0.12 -1.50 16 3 C -0.13 -1.87 8.41 37.16 0.31 -1.56 16 4 C 0.14 2.72 6.41 -3.07 -0.02 2.70 16 5 N -0.60 -14.49 3.39 -170.08 -0.58 -15.07 16 6 C -0.23 -6.10 10.27 -15.05 -0.15 -6.25 16 7 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 10 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.15 3.46 5.27 -2.54 -0.01 3.45 16 15 C 0.12 2.28 2.67 -65.79 -0.18 2.10 16 16 H 0.09 1.72 7.44 -51.93 -0.39 1.34 16 17 N -0.69 -11.56 4.49 -52.72 -0.24 -11.79 16 18 C 0.56 9.88 7.77 -12.39 -0.10 9.78 16 19 O -0.54 -11.31 15.97 5.30 0.08 -11.22 16 20 C -0.11 -1.67 5.87 -104.99 -0.62 -2.29 16 21 C -0.07 -0.76 9.47 -39.51 -0.37 -1.13 16 22 C -0.09 -0.93 9.99 -39.96 -0.40 -1.33 16 23 C 0.02 0.27 7.42 -38.53 -0.29 -0.02 16 24 O -0.24 -2.62 10.78 -20.29 -0.22 -2.84 16 25 C 0.43 4.74 9.53 52.23 0.50 5.24 16 26 O -0.39 -2.67 13.62 -40.50 -0.55 -3.22 16 27 N -0.47 -6.75 11.38 -12.82 -0.15 -6.90 16 28 C 0.04 0.54 7.22 -84.71 -0.61 -0.07 16 29 C 0.00 -0.05 9.64 -38.83 -0.37 -0.42 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 6.48 -51.93 -0.34 0.25 16 33 H 0.06 1.08 7.57 -51.93 -0.39 0.68 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 37 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.02 0.56 7.80 -51.93 -0.41 0.15 16 40 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 41 H 0.40 5.75 5.18 -40.82 -0.21 5.53 16 42 H 0.15 1.38 6.37 -52.48 -0.33 1.04 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.42 0.01 9.06 45.56 0.41 0.42 16 45 H 0.15 2.36 7.64 -52.49 -0.40 1.96 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -35.17 370.70 -7.58 -42.75 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.83 Total: 4.88 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.23 Total: 7.09 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.40 Total: -59.91 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.69 Total: -17.28 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.17 -7.58 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974713045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.594 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds