Wall clock time and date at job start Wed Apr 1 2020 03:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.78145 * 2 1 4 4 C 1.54319 * 110.71862 * 236.76307 * 2 1 3 5 5 N 1.47022 * 107.26872 * 219.44192 * 4 2 1 6 6 C 1.36943 * 125.64401 * 178.98584 * 5 4 2 7 7 H 1.07995 * 120.00224 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99487 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00108 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46858 * 59.99937 * 10 8 6 12 12 H 1.48499 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47221 * 300.00007 * 10 8 6 14 14 C 1.47417 * 108.70536 * 358.94199 * 5 4 2 15 15 C 1.54906 * 104.83274 * 24.12833 * 14 5 4 16 16 H 1.09004 * 111.04108 * 204.90804 * 15 14 5 17 17 N 1.46492 * 111.00621 * 81.06473 * 15 14 5 18 18 C 1.34776 * 120.00108 * 92.80574 * 17 15 14 19 19 O 1.21572 * 120.00064 * 0.02562 * 18 17 15 20 20 C 1.47711 * 120.00262 * 179.97438 * 18 17 15 21 21 C 1.39995 * 119.96377 * 0.02562 * 20 18 17 22 22 C 1.36602 * 120.46227 * 180.02562 * 21 20 18 23 23 C 1.38804 * 120.21035 * 0.02562 * 22 21 20 24 24 O 1.35174 * 133.65404 * 179.97438 * 23 22 21 25 25 C 1.34397 * 108.24981 * 180.02562 * 24 23 22 26 26 O 1.35172 * 124.91281 * 180.02562 * 25 24 23 27 27 N 1.30591 * 110.17687 * 0.02562 * 25 24 23 28 28 C 1.36218 * 108.68047 * 359.97438 * 27 25 24 29 29 C 1.39223 * 133.66308 * 179.97438 * 28 27 25 30 30 H 1.09006 * 109.47085 * 296.76216 * 1 2 3 31 31 H 1.09004 * 109.47119 * 56.75733 * 1 2 3 32 32 H 1.08995 * 109.47103 * 176.75811 * 1 2 3 33 33 H 1.08994 * 109.47507 * 183.23882 * 3 2 1 34 34 H 1.09003 * 109.47058 * 303.24379 * 3 2 1 35 35 H 1.09007 * 109.46885 * 63.23652 * 3 2 1 36 36 H 1.09001 * 109.88524 * 338.86174 * 4 2 1 37 37 H 1.09003 * 109.88733 * 100.02765 * 4 2 1 38 38 H 0.97008 * 120.00222 * 180.02562 * 9 8 6 39 39 H 1.08996 * 110.36753 * 265.28897 * 14 5 4 40 40 H 1.08998 * 110.36808 * 142.96660 * 14 5 4 41 41 H 0.97000 * 120.00459 * 272.80403 * 17 15 14 42 42 H 1.08003 * 119.76699 * 359.74393 * 21 20 18 43 43 H 1.08001 * 119.89758 * 179.97438 * 22 21 20 44 44 H 0.96706 * 113.99515 * 359.97438 * 26 25 24 45 45 H 1.07997 * 120.26423 * 0.04769 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2444 -1.5506 -0.7390 6 6 4.0043 -2.3967 -1.5020 7 1 3.7612 -2.5505 -2.5429 8 6 5.0865 -3.0575 -0.9370 9 7 5.3819 -2.8712 0.3320 10 14 6.1227 -4.2122 -1.9773 11 1 6.7147 -3.4592 -3.1121 12 1 7.2088 -4.7886 -1.1447 13 1 5.2679 -5.3073 -2.5022 14 6 3.4632 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2138 16 1 2.1843 -0.1519 2.0872 17 7 1.2272 -1.9488 1.5144 18 6 1.2025 -2.4618 2.7605 19 8 1.8869 -1.9672 3.6351 20 6 0.3432 -3.6243 3.0638 21 6 -0.4450 -4.1930 2.0562 22 6 -1.2437 -5.2679 2.3255 23 6 -1.2816 -5.8070 3.6041 24 8 -1.9536 -6.8385 4.1623 25 6 -1.6060 -6.9152 5.4582 26 8 -2.0803 -7.8294 6.3336 27 7 -0.7437 -5.9787 5.7495 28 6 -0.4976 -5.2477 4.6267 29 6 0.3162 -4.1519 4.3523 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5634 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6750 1.9701 -0.8595 35 1 1.7691 1.9344 0.9176 36 1 1.3129 -1.4758 -1.5776 37 1 2.3740 -0.1024 -1.9978 38 1 6.1384 -3.3327 0.7268 39 1 4.1931 -0.4479 0.7984 40 1 3.7960 -2.1426 1.2168 41 1 0.6808 -2.3432 0.8167 42 1 -0.4248 -3.7761 1.0601 43 1 -1.8484 -5.6992 1.5414 44 1 -2.7137 -8.4507 5.9488 45 1 0.9224 -3.7153 5.1322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974713045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:26 Heat of formation + Delta-G solvation = -28.349811 kcal Electronic energy + Delta-G solvation = -30420.118944 eV Core-core repulsion = 26211.521208 eV Total energy + Delta-G solvation = -4208.597736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.47084 -41.41910 -39.92627 -39.21352 -38.20034 -35.96422 -35.63172 -34.55056 -32.56201 -32.04213 -30.86533 -29.56218 -28.00811 -27.36654 -25.87596 -24.69064 -24.50083 -23.07747 -22.48979 -21.74147 -20.66246 -20.21375 -18.98462 -18.71933 -18.66091 -18.39581 -17.49007 -16.85373 -16.48447 -16.35189 -15.97342 -15.65224 -15.51769 -15.20865 -15.08515 -14.93444 -14.80656 -14.60232 -14.17061 -14.14105 -13.71213 -13.62947 -13.51707 -13.00431 -12.96012 -12.79446 -12.73985 -12.57810 -12.51614 -12.23053 -12.13177 -11.75219 -11.72487 -11.62874 -11.42777 -11.31656 -11.06693 -10.71551 -10.12477 -9.84744 -9.49497 -8.80471 -7.71692 -5.16521 -0.43148 -0.36381 0.76038 1.24593 1.46963 1.49566 1.56329 1.73736 1.88635 2.24110 2.51972 2.65611 3.25333 3.37999 3.57586 3.62132 3.74238 3.77272 3.82725 3.95393 4.01982 4.10719 4.13265 4.46417 4.52445 4.55591 4.77723 4.81359 4.88148 4.92899 4.94777 4.98178 5.00558 5.07412 5.09085 5.15421 5.25215 5.31999 5.33885 5.38928 5.53113 5.58160 5.71061 5.78704 5.86845 6.34978 6.58475 6.64315 7.12971 7.24213 7.83693 8.47159 9.28378 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.003173 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.242286 B = 8821.102504 C =10227.378601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.230 4.230 7 H 0.086 0.914 8 C -0.068 4.068 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.279 1.279 12 H -0.303 1.303 13 H -0.273 1.273 14 C 0.153 3.847 15 C 0.135 3.865 16 H 0.082 0.918 17 N -0.681 5.681 18 C 0.556 3.444 19 O -0.581 6.581 20 C -0.124 4.124 21 C -0.062 4.062 22 C -0.067 4.067 23 C 0.020 3.980 24 O -0.230 6.230 25 C 0.454 3.546 26 O -0.381 6.381 27 N -0.519 5.519 28 C 0.021 3.979 29 C -0.024 4.024 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.025 0.975 38 H 0.241 0.759 39 H -0.015 1.015 40 H 0.068 0.932 41 H 0.409 0.591 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.453 0.547 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 -4.780 2.311 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.185 4.185 4 C 0.012 3.988 5 N -0.343 5.343 6 C -0.359 4.359 7 H 0.104 0.896 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.205 1.205 12 H -0.229 1.229 13 H -0.199 1.199 14 C 0.027 3.973 15 C 0.029 3.971 16 H 0.100 0.900 17 N -0.332 5.332 18 C 0.344 3.656 19 O -0.463 6.463 20 C -0.129 4.129 21 C -0.080 4.080 22 C -0.086 4.086 23 C -0.030 4.030 24 O -0.126 6.126 25 C 0.204 3.796 26 O -0.186 6.186 27 N -0.267 5.267 28 C -0.090 4.090 29 C -0.045 4.045 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.003 0.997 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.189 0.811 43 H 0.202 0.798 44 H 0.316 0.684 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.420 -4.300 3.914 22.196 hybrid contribution 0.689 -1.317 -1.062 1.826 sum -20.731 -5.617 2.853 21.667 Atomic orbital electron populations 1.21706 0.90880 1.02651 1.03029 1.21836 0.97590 0.95275 0.92725 1.21700 0.99990 0.93840 1.02973 1.21677 0.88916 0.93170 0.95006 1.44674 1.31828 1.50444 1.07325 1.19395 1.06428 1.16584 0.93455 0.89612 1.25591 1.00453 1.02702 0.97313 1.70105 1.30093 1.47202 1.12481 0.85204 0.78082 0.79006 0.77354 1.20527 1.22945 1.19904 1.21953 0.91661 0.98289 0.85425 1.22235 0.91013 0.86628 0.97272 0.89994 1.45508 1.44985 1.32401 1.10282 1.18365 0.81433 0.83129 0.82667 1.90754 1.45013 1.62616 1.47886 1.19691 1.00717 0.97923 0.94536 1.21132 0.93040 0.94449 0.99401 1.19884 1.00982 0.95765 0.91938 1.20357 0.96359 0.89581 0.96725 1.84476 1.58721 1.45721 1.23684 1.23060 0.89177 0.90066 0.77291 1.85218 1.62425 1.41849 1.29095 1.70831 1.19445 1.08879 1.27534 1.19467 1.01409 0.98951 0.89125 1.20218 0.95513 0.92220 0.96515 0.91728 0.90345 0.91760 0.94868 0.90128 0.91399 0.94033 0.95690 0.94917 0.99702 0.91355 0.75208 0.81062 0.79765 0.68361 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.07 71.98 0.58 -1.98 16 2 C -0.07 -2.17 0.80 -50.99 -0.04 -2.21 16 3 C -0.13 -3.52 8.41 71.98 0.61 -2.92 16 4 C 0.14 4.98 6.41 86.73 0.56 5.54 16 5 N -0.62 -30.05 3.39 -692.02 -2.35 -32.40 16 6 C -0.23 -12.39 10.27 84.03 0.86 -11.53 16 7 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 9 N -0.95 -58.26 10.09 21.65 0.22 -58.04 16 10 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 C 0.15 7.68 5.27 86.86 0.46 8.14 16 15 C 0.13 5.06 2.67 46.38 0.12 5.19 16 16 H 0.08 3.24 7.44 -2.39 -0.02 3.23 16 17 N -0.68 -22.56 4.49 -438.96 -1.97 -24.53 16 18 C 0.56 20.33 7.77 86.75 0.67 21.01 16 19 O -0.58 -26.39 15.97 -3.94 -0.06 -26.45 16 20 C -0.12 -3.68 5.87 -20.10 -0.12 -3.80 16 21 C -0.06 -1.27 9.47 22.31 0.21 -1.06 16 22 C -0.07 -1.17 9.99 22.02 0.22 -0.95 16 23 C 0.02 0.45 7.42 22.95 0.17 0.62 16 24 O -0.23 -4.26 10.78 10.07 0.11 -4.15 16 25 C 0.45 9.14 9.53 130.43 1.24 10.38 16 26 O -0.38 -4.18 13.62 -62.24 -0.85 -5.03 16 27 N -0.52 -15.04 11.38 -422.84 -4.81 -19.85 16 28 C 0.02 0.60 7.22 39.24 0.28 0.88 16 29 C -0.02 -0.77 9.64 22.75 0.22 -0.55 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 1.16 6.48 -2.39 -0.02 1.15 16 33 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.04 1.37 7.76 -2.39 -0.02 1.35 16 37 H 0.03 0.92 7.84 -2.39 -0.02 0.90 16 38 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 39 H -0.01 -0.83 7.80 -2.39 -0.02 -0.85 16 40 H 0.07 4.08 5.87 -2.39 -0.01 4.07 16 41 H 0.41 11.02 5.18 -92.71 -0.48 10.53 16 42 H 0.17 2.56 6.37 -2.91 -0.02 2.55 16 43 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.45 -1.64 9.06 -74.05 -0.67 -2.31 16 45 H 0.13 4.56 7.64 -2.91 -0.02 4.53 16 Total: -1.00 -83.27 370.70 -1.26 -84.53 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.09 Total: 14.74 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.52 Total: 23.36 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -8.92 Total: -134.82 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.80 Total: -35.63 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -83.27 -1.26 -84.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974713045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.184 kcal (2) G-P(sol) polarization free energy of solvation -83.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds