Wall clock time and date at job start Wed Apr 1 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.78234 * 2 1 4 4 C 1.54321 * 110.71964 * 236.75797 * 2 1 3 5 5 N 1.47024 * 107.27529 * 263.83344 * 4 2 1 6 6 C 1.36935 * 125.64964 * 181.09458 * 5 4 2 7 7 H 1.07997 * 120.00304 * 359.97438 * 6 5 4 8 8 C 1.38820 * 119.99777 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00027 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47077 * 60.00557 * 10 8 6 12 12 H 1.48505 * 109.46742 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47411 * 300.00323 * 10 8 6 14 14 C 1.47420 * 108.70010 * 1.05692 * 5 4 2 15 15 C 1.54908 * 104.83556 * 335.87420 * 14 5 4 16 16 H 1.09000 * 111.01139 * 155.11950 * 15 14 5 17 17 N 1.46500 * 111.00220 * 278.93710 * 15 14 5 18 18 C 1.34781 * 119.99836 * 273.54062 * 17 15 14 19 19 O 1.21682 * 120.00237 * 0.02562 * 18 17 15 20 20 C 1.46840 * 119.99739 * 179.97438 * 18 17 15 21 21 C 1.42395 * 128.41409 * 359.97438 * 20 18 17 22 22 N 1.29892 * 106.48281 * 180.28139 * 21 20 18 23 23 O 1.20738 * 112.91797 * 359.52181 * 22 21 20 24 24 C 1.34463 * 111.90095 * 0.49841 * 23 22 21 25 25 C 1.46425 * 127.23502 * 179.74530 * 24 23 22 26 26 C 1.36676 * 125.99868 * 359.67334 * 25 24 23 27 27 C 1.40445 * 106.70344 * 179.88847 * 26 25 24 28 28 C 1.35078 * 107.12083 * 0.36828 * 27 26 25 29 29 O 1.34088 * 108.78154 * 359.77508 * 28 27 26 30 30 H 1.09005 * 109.47088 * 296.76331 * 1 2 3 31 31 H 1.09002 * 109.46838 * 56.75961 * 1 2 3 32 32 H 1.08992 * 109.47673 * 176.76352 * 1 2 3 33 33 H 1.09007 * 109.46855 * 183.24193 * 3 2 1 34 34 H 1.09005 * 109.46924 * 303.23762 * 3 2 1 35 35 H 1.08997 * 109.47222 * 63.23924 * 3 2 1 36 36 H 1.08998 * 109.88707 * 144.41247 * 4 2 1 37 37 H 1.09004 * 109.88404 * 23.24767 * 4 2 1 38 38 H 0.96992 * 120.00154 * 179.97438 * 9 8 6 39 39 H 1.08996 * 110.37173 * 217.03383 * 14 5 4 40 40 H 1.09005 * 110.36671 * 94.71162 * 14 5 4 41 41 H 0.97001 * 119.99920 * 93.54262 * 17 15 14 42 42 H 1.08002 * 126.75598 * 0.02562 * 21 20 18 43 43 H 1.08000 * 126.64717 * 0.02562 * 26 25 24 44 44 H 1.07998 * 126.44250 * 180.14133 * 27 26 25 45 45 H 1.08003 * 125.61299 * 179.76239 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3715 -2.1532 -0.7390 6 6 2.8943 -3.1634 -1.5014 7 1 3.1249 -2.9906 -2.5422 8 6 3.1280 -4.4097 -0.9364 9 7 2.8474 -4.6203 0.3321 10 14 3.8405 -5.7880 -1.9767 11 1 5.1679 -5.3771 -2.5006 12 1 3.9925 -7.0084 -1.1443 13 1 2.9272 -6.0742 -3.1120 14 6 2.0125 -2.2509 0.6875 15 6 2.0789 -0.7955 1.2138 16 1 1.4401 -0.6663 2.0875 17 7 3.4595 -0.4083 1.5144 18 6 3.9887 -0.6840 2.7229 19 8 3.3201 -1.2549 3.5641 20 6 5.3727 -0.2964 3.0240 21 6 6.3079 0.3702 2.1822 22 7 7.4014 0.4945 2.8720 23 8 7.3096 0.0363 3.9853 24 6 6.0946 -0.4935 4.2110 25 6 5.6236 -1.1394 5.4379 26 6 6.3520 -1.3228 6.5797 27 6 5.5107 -1.9769 7.4945 28 6 4.3248 -2.1690 6.8770 29 8 4.3966 -1.6630 5.6373 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3634 -1.0259 -0.0580 33 1 3.1611 1.4060 -0.0581 34 1 1.6751 1.9700 -0.8596 35 1 1.7692 1.9343 0.9176 36 1 2.9868 -0.3208 -1.5776 37 1 1.3262 -0.8256 -1.9977 38 1 3.0103 -5.4912 0.7268 39 1 2.7291 -2.8788 1.2169 40 1 1.0038 -2.6488 0.7985 41 1 3.9926 0.0465 0.8437 42 1 6.1420 0.7029 1.1681 43 1 7.3754 -1.0209 6.7470 44 1 5.7653 -2.2741 8.5011 45 1 3.4610 -2.6512 7.3103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974736437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:11 Heat of formation + Delta-G solvation = 82.522348 kcal Electronic energy + Delta-G solvation = -31237.285015 eV Core-core repulsion = 27033.495056 eV Total energy + Delta-G solvation = -4203.789958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.00868 -42.49935 -39.65756 -37.83202 -34.16177 -33.78670 -33.32205 -32.94546 -32.49614 -30.71057 -29.01471 -28.13294 -26.91649 -25.63383 -24.83408 -23.59736 -23.03090 -21.61330 -21.18088 -20.37568 -19.83022 -18.97964 -18.43200 -17.85917 -17.25428 -16.69184 -16.11503 -15.88804 -15.80526 -14.95429 -14.68612 -14.45070 -14.09670 -13.91046 -13.77152 -13.58015 -13.19300 -12.93427 -12.83456 -12.69357 -12.44431 -12.20660 -11.94675 -11.77347 -11.69008 -11.32336 -11.18444 -11.02380 -10.76875 -10.67411 -10.45250 -10.37104 -10.24002 -9.96387 -9.90079 -9.82494 -9.69192 -9.57651 -8.68096 -8.41712 -8.16171 -6.81324 -5.62613 -3.05824 0.37686 1.78524 1.97962 2.04998 2.59453 3.34219 3.40181 3.44518 3.46399 3.63144 3.76562 4.13871 4.23880 4.48828 4.61237 4.84178 4.85629 4.94877 5.11798 5.21071 5.24342 5.30329 5.52110 5.60324 5.65743 5.69403 5.72185 5.77017 5.85811 5.88449 6.00637 6.08488 6.16237 6.23673 6.30404 6.38886 6.47556 6.59031 6.68457 6.72375 6.96401 7.02744 7.48303 7.62034 7.85459 7.94100 8.01817 8.39967 8.64442 9.22320 9.83964 10.47786 11.39771 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009564 B = 0.003997 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.073216 B = 7004.119426 C = 7924.297597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.127 3.873 16 H 0.087 0.913 17 N -0.692 5.692 18 C 0.587 3.413 19 O -0.514 6.514 20 C -0.223 4.223 21 C 0.033 3.967 22 N -0.358 5.358 23 O 0.119 5.881 24 C 0.102 3.898 25 C 0.029 3.971 26 C -0.154 4.154 27 C -0.230 4.230 28 C -0.002 4.002 29 O -0.106 6.106 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.021 0.979 41 H 0.394 0.606 42 H 0.202 0.798 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 11.801 10.387 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.093 0.907 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.021 3.979 15 C 0.022 3.978 16 H 0.105 0.895 17 N -0.343 5.343 18 C 0.372 3.628 19 O -0.390 6.390 20 C -0.230 4.230 21 C -0.146 4.146 22 N -0.062 5.062 23 O 0.055 5.945 24 C 0.037 3.963 25 C -0.023 4.023 26 C -0.175 4.175 27 C -0.249 4.249 28 C -0.074 4.074 29 O 0.003 5.997 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.229 0.771 42 H 0.219 0.781 43 H 0.175 0.825 44 H 0.172 0.828 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.533 11.689 10.483 16.093 hybrid contribution 0.024 -0.895 -1.001 1.343 sum 3.557 10.794 9.481 14.800 Atomic orbital electron populations 1.21681 0.93436 1.02537 1.00904 1.21842 0.96095 0.94516 0.96360 1.21726 1.00267 0.95494 1.01412 1.21410 0.96423 0.86840 0.93632 1.44446 1.74222 1.06647 1.07357 1.18971 1.34416 0.89287 0.92852 0.90652 1.24780 1.01646 0.97599 0.96308 1.69785 1.53459 1.22379 1.10763 0.86214 0.78899 0.81698 0.79025 1.21259 1.21605 1.21223 1.22312 1.00148 0.90399 0.85055 1.22540 0.80671 0.98333 0.96267 0.89505 1.45562 1.15106 1.59822 1.13785 1.16553 0.83751 0.79591 0.82947 1.90872 1.60665 1.40588 1.46906 1.21751 0.98460 1.08738 0.94023 1.25001 0.88249 0.99286 1.02019 1.73487 1.23090 1.17389 0.92209 1.84904 1.28757 1.54787 1.26014 1.20987 0.85667 0.96945 0.92734 1.18004 0.86026 1.05972 0.92273 1.21977 1.01100 1.02287 0.92091 1.21740 0.94107 1.07029 1.02008 1.24559 1.00617 0.99589 0.82612 1.84556 1.29071 1.55867 1.30237 0.93040 0.92677 0.91705 0.93054 0.92622 0.92732 0.96137 0.95836 0.93644 0.86820 0.96141 0.77097 0.78124 0.82519 0.82809 0.77377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.41 37.16 0.31 -1.56 16 2 C -0.09 -1.39 0.81 -152.67 -0.12 -1.52 16 3 C -0.13 -1.65 8.07 37.16 0.30 -1.35 16 4 C 0.14 2.79 6.41 -3.06 -0.02 2.77 16 5 N -0.60 -14.77 3.39 -170.08 -0.58 -15.35 16 6 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 7 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.06 10.09 55.49 0.56 -26.50 16 10 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.15 3.53 5.27 -2.53 -0.01 3.52 16 15 C 0.13 2.38 2.56 -65.78 -0.17 2.21 16 16 H 0.09 1.65 7.63 -51.93 -0.40 1.25 16 17 N -0.69 -11.99 4.69 -52.98 -0.25 -12.24 16 18 C 0.59 10.90 7.79 -12.78 -0.10 10.80 16 19 O -0.51 -10.98 13.65 -18.27 -0.25 -11.23 16 20 C -0.22 -3.58 6.37 -104.04 -0.66 -4.25 16 21 C 0.03 0.45 11.67 -16.77 -0.20 0.25 16 22 N -0.36 -5.07 11.97 30.86 0.37 -4.70 16 23 O 0.12 1.67 11.19 16.09 0.18 1.85 16 24 C 0.10 1.57 7.41 -35.50 -0.26 1.30 16 25 C 0.03 0.43 7.08 -36.85 -0.26 0.17 16 26 C -0.15 -1.81 10.86 -39.32 -0.43 -2.24 16 27 C -0.23 -2.38 10.88 -39.87 -0.43 -2.81 16 28 C 0.00 -0.03 12.08 29.61 0.36 0.33 16 29 O -0.11 -1.71 7.67 -18.82 -0.14 -1.85 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 33 H 0.05 0.61 6.35 -51.93 -0.33 0.28 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 37 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.11 3.23 5.87 -51.93 -0.30 2.93 16 40 H 0.02 0.54 7.80 -51.93 -0.41 0.13 16 41 H 0.39 5.98 6.11 -40.82 -0.25 5.73 16 42 H 0.20 2.06 7.74 -52.49 -0.41 1.65 16 43 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.21 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -33.48 372.51 -7.27 -40.75 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.80 Total: 5.47 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.95 Total: 0.98 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.10 Total: -58.79 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.21 Total: -11.23 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.48 -7.27 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974736437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.272 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds