Wall clock time and date at job start Wed Apr 1 2020 03:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.78234 * 2 1 4 4 C 1.54321 * 110.71964 * 236.75797 * 2 1 3 5 5 N 1.47024 * 107.27529 * 263.83344 * 4 2 1 6 6 C 1.36935 * 125.64964 * 181.09458 * 5 4 2 7 7 H 1.07997 * 120.00304 * 359.97438 * 6 5 4 8 8 C 1.38820 * 119.99777 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00027 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47077 * 60.00557 * 10 8 6 12 12 H 1.48505 * 109.46742 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47411 * 300.00323 * 10 8 6 14 14 C 1.47420 * 108.70010 * 1.05692 * 5 4 2 15 15 C 1.54908 * 104.83556 * 335.87420 * 14 5 4 16 16 H 1.09000 * 111.01139 * 155.11950 * 15 14 5 17 17 N 1.46500 * 111.00220 * 278.93710 * 15 14 5 18 18 C 1.34781 * 119.99836 * 273.54062 * 17 15 14 19 19 O 1.21682 * 120.00237 * 0.02562 * 18 17 15 20 20 C 1.46840 * 119.99739 * 179.97438 * 18 17 15 21 21 C 1.42395 * 128.41409 * 359.97438 * 20 18 17 22 22 N 1.29892 * 106.48281 * 180.28139 * 21 20 18 23 23 O 1.20738 * 112.91797 * 359.52181 * 22 21 20 24 24 C 1.34463 * 111.90095 * 0.49841 * 23 22 21 25 25 C 1.46425 * 127.23502 * 179.74530 * 24 23 22 26 26 C 1.36676 * 125.99868 * 359.67334 * 25 24 23 27 27 C 1.40445 * 106.70344 * 179.88847 * 26 25 24 28 28 C 1.35078 * 107.12083 * 0.36828 * 27 26 25 29 29 O 1.34088 * 108.78154 * 359.77508 * 28 27 26 30 30 H 1.09005 * 109.47088 * 296.76331 * 1 2 3 31 31 H 1.09002 * 109.46838 * 56.75961 * 1 2 3 32 32 H 1.08992 * 109.47673 * 176.76352 * 1 2 3 33 33 H 1.09007 * 109.46855 * 183.24193 * 3 2 1 34 34 H 1.09005 * 109.46924 * 303.23762 * 3 2 1 35 35 H 1.08997 * 109.47222 * 63.23924 * 3 2 1 36 36 H 1.08998 * 109.88707 * 144.41247 * 4 2 1 37 37 H 1.09004 * 109.88404 * 23.24767 * 4 2 1 38 38 H 0.96992 * 120.00154 * 179.97438 * 9 8 6 39 39 H 1.08996 * 110.37173 * 217.03383 * 14 5 4 40 40 H 1.09005 * 110.36671 * 94.71162 * 14 5 4 41 41 H 0.97001 * 119.99920 * 93.54262 * 17 15 14 42 42 H 1.08002 * 126.75598 * 0.02562 * 21 20 18 43 43 H 1.08000 * 126.64717 * 0.02562 * 26 25 24 44 44 H 1.07998 * 126.44250 * 180.14133 * 27 26 25 45 45 H 1.08003 * 125.61299 * 179.76239 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3715 -2.1532 -0.7390 6 6 2.8943 -3.1634 -1.5014 7 1 3.1249 -2.9906 -2.5422 8 6 3.1280 -4.4097 -0.9364 9 7 2.8474 -4.6203 0.3321 10 14 3.8405 -5.7880 -1.9767 11 1 5.1679 -5.3771 -2.5006 12 1 3.9925 -7.0084 -1.1443 13 1 2.9272 -6.0742 -3.1120 14 6 2.0125 -2.2509 0.6875 15 6 2.0789 -0.7955 1.2138 16 1 1.4401 -0.6663 2.0875 17 7 3.4595 -0.4083 1.5144 18 6 3.9887 -0.6840 2.7229 19 8 3.3201 -1.2549 3.5641 20 6 5.3727 -0.2964 3.0240 21 6 6.3079 0.3702 2.1822 22 7 7.4014 0.4945 2.8720 23 8 7.3096 0.0363 3.9853 24 6 6.0946 -0.4935 4.2110 25 6 5.6236 -1.1394 5.4379 26 6 6.3520 -1.3228 6.5797 27 6 5.5107 -1.9769 7.4945 28 6 4.3248 -2.1690 6.8770 29 8 4.3966 -1.6630 5.6373 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3634 -1.0259 -0.0580 33 1 3.1611 1.4060 -0.0581 34 1 1.6751 1.9700 -0.8596 35 1 1.7692 1.9343 0.9176 36 1 2.9868 -0.3208 -1.5776 37 1 1.3262 -0.8256 -1.9977 38 1 3.0103 -5.4912 0.7268 39 1 2.7291 -2.8788 1.2169 40 1 1.0038 -2.6488 0.7985 41 1 3.9926 0.0465 0.8437 42 1 6.1420 0.7029 1.1681 43 1 7.3754 -1.0209 6.7470 44 1 5.7653 -2.2741 8.5011 45 1 3.4610 -2.6512 7.3103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974736437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:10 Heat of formation + Delta-G solvation = 61.659203 kcal Electronic energy + Delta-G solvation = -31238.189709 eV Core-core repulsion = 27033.495056 eV Total energy + Delta-G solvation = -4204.694652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.09825 -43.48715 -41.15025 -39.34078 -35.69686 -35.27607 -34.36666 -34.33481 -33.52637 -32.59772 -30.22832 -29.57960 -28.08898 -27.42752 -26.17021 -24.90474 -24.33583 -22.74412 -22.35179 -21.80915 -21.30836 -20.25073 -19.62437 -18.95744 -18.70303 -18.43953 -17.45032 -17.02649 -16.93601 -16.62452 -16.09247 -15.87305 -15.60844 -15.43210 -15.15379 -14.84730 -14.63504 -14.10851 -13.80451 -13.72717 -13.70184 -13.64657 -13.41269 -13.04664 -13.01034 -12.87115 -12.78405 -12.61260 -12.55544 -12.17833 -11.78307 -11.76354 -11.74902 -11.53147 -11.42691 -11.34463 -11.07255 -10.83133 -10.74607 -9.97002 -9.21129 -8.83373 -7.74944 -5.19754 -0.74217 0.67105 0.92947 1.03810 1.43184 1.45926 1.52381 1.66339 2.03165 2.28502 2.48475 2.73541 3.05740 3.17400 3.34430 3.47174 3.57875 3.70668 3.88953 3.98215 3.99742 4.08646 4.10980 4.15781 4.42371 4.53789 4.63349 4.75165 4.78359 4.85670 4.89307 4.90779 4.94214 4.98088 5.05344 5.12200 5.21854 5.30859 5.35348 5.48558 5.49119 5.54742 5.69508 5.85298 6.08542 6.33227 6.55513 6.87215 7.10183 7.25033 7.80595 8.43910 9.24937 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009564 B = 0.003997 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.073216 B = 7004.119426 C = 7924.297597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.233 4.233 7 H 0.084 0.916 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.974 3.026 11 H -0.277 1.277 12 H -0.300 1.300 13 H -0.277 1.277 14 C 0.155 3.845 15 C 0.140 3.860 16 H 0.083 0.917 17 N -0.684 5.684 18 C 0.583 3.417 19 O -0.550 6.550 20 C -0.258 4.258 21 C 0.051 3.949 22 N -0.367 5.367 23 O 0.121 5.879 24 C 0.111 3.889 25 C -0.021 4.021 26 C -0.133 4.133 27 C -0.222 4.222 28 C -0.010 4.010 29 O -0.146 6.146 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.242 0.758 39 H 0.068 0.932 40 H -0.014 1.014 41 H 0.406 0.594 42 H 0.233 0.767 43 H 0.184 0.816 44 H 0.191 0.809 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 13.870 10.285 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.362 4.362 7 H 0.102 0.898 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.802 3.198 11 H -0.203 1.203 12 H -0.226 1.226 13 H -0.203 1.203 14 C 0.029 3.971 15 C 0.034 3.966 16 H 0.101 0.899 17 N -0.335 5.335 18 C 0.370 3.630 19 O -0.429 6.429 20 C -0.265 4.265 21 C -0.129 4.129 22 N -0.073 5.073 23 O 0.060 5.940 24 C 0.045 3.955 25 C -0.072 4.072 26 C -0.153 4.153 27 C -0.241 4.241 28 C -0.080 4.080 29 O -0.040 6.040 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.004 0.996 41 H 0.243 0.757 42 H 0.249 0.751 43 H 0.201 0.799 44 H 0.208 0.792 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.573 13.813 10.354 17.858 hybrid contribution -0.321 -1.583 -0.864 1.832 sum 4.252 12.230 9.490 16.053 Atomic orbital electron populations 1.21688 0.92344 1.01254 1.03080 1.21824 0.96919 0.95970 0.92628 1.21710 1.00830 0.92589 1.03184 1.21662 0.97177 0.84768 0.95128 1.44672 1.73939 1.08256 1.07493 1.19395 1.33245 0.90114 0.93463 0.89831 1.25586 1.02918 1.00078 0.97343 1.70107 1.55191 1.21967 1.12439 0.85221 0.78564 0.78491 0.77496 1.20253 1.22645 1.20262 1.21934 0.96705 0.93270 0.85181 1.22200 0.81783 0.95464 0.97126 0.89950 1.45419 1.14649 1.59533 1.13876 1.16916 0.84583 0.78770 0.82735 1.90846 1.61869 1.42190 1.48041 1.21574 0.97887 1.11515 0.95558 1.25389 0.87008 0.97716 1.02743 1.73459 1.23315 1.18126 0.92372 1.84904 1.28070 1.54840 1.26142 1.21273 0.85749 0.95587 0.92851 1.18341 0.86695 1.08718 0.93443 1.22454 1.01966 1.00027 0.90870 1.22188 0.92957 1.05765 1.03156 1.25389 1.02398 0.98742 0.81514 1.84523 1.30157 1.57012 1.32323 0.91155 0.90153 0.94792 0.92165 0.90297 0.91459 0.94591 0.95650 0.94873 0.91355 0.99648 0.75667 0.75062 0.79861 0.79158 0.74638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.41 71.98 0.61 -2.89 16 2 C -0.07 -2.20 0.81 -50.99 -0.04 -2.24 16 3 C -0.13 -2.69 8.07 71.98 0.58 -2.11 16 4 C 0.14 5.20 6.41 86.73 0.56 5.76 16 5 N -0.62 -30.98 3.39 -692.00 -2.35 -33.32 16 6 C -0.23 -12.95 10.27 84.04 0.86 -12.09 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 8 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 9 N -0.95 -58.89 10.09 21.65 0.22 -58.68 16 10 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 C 0.16 7.90 5.27 86.86 0.46 8.36 16 15 C 0.14 5.34 2.56 46.38 0.12 5.46 16 16 H 0.08 3.23 7.63 -2.39 -0.02 3.21 16 17 N -0.68 -23.74 4.69 -439.74 -2.06 -25.80 16 18 C 0.58 22.37 7.79 86.49 0.67 23.04 16 19 O -0.55 -24.87 13.65 18.15 0.25 -24.63 16 20 C -0.26 -8.42 6.37 -19.48 -0.12 -8.54 16 21 C 0.05 1.31 11.67 86.01 1.00 2.32 16 22 N -0.37 -10.01 11.97 -56.71 -0.68 -10.69 16 23 O 0.12 3.33 11.19 67.78 0.76 4.09 16 24 C 0.11 3.45 7.41 24.91 0.18 3.64 16 25 C -0.02 -0.64 7.08 24.04 0.17 -0.47 16 26 C -0.13 -2.93 10.86 22.44 0.24 -2.69 16 27 C -0.22 -4.12 10.88 22.08 0.24 -3.88 16 28 C -0.01 -0.23 12.08 67.09 0.81 0.58 16 29 O -0.15 -4.91 7.67 16.17 0.12 -4.79 16 30 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 33 H 0.06 1.20 6.35 -2.38 -0.02 1.18 16 34 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.27 7.76 -2.39 -0.02 1.25 16 37 H 0.03 0.97 7.84 -2.38 -0.02 0.95 16 38 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.07 4.15 5.87 -2.39 -0.01 4.13 16 40 H -0.01 -0.80 7.80 -2.38 -0.02 -0.82 16 41 H 0.41 11.81 6.11 -92.71 -0.57 11.25 16 42 H 0.23 4.18 7.74 -2.91 -0.02 4.16 16 43 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 45 H 0.24 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -78.39 372.51 5.57 -72.83 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.47 Total: 21.43 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.81 Total: 10.85 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -4.87 Total: -128.49 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 1.13 Total: -25.32 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.39 5.57 -72.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974736437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.486 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds